PDB Short entry for 2HOT HEADER TRANSCRIPTION/DNA 16-JUL-06 2HOT TITLE PHAGE SELECTED HOMEODOMAIN BOUND TO MODIFIED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP COMPND 3 *GP*GP*A)-3'; COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP COMPND 8 *AP*AP*A)-3'; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: SEGMENTATION POLARITY HOMEOBOX PROTEIN ENGRAILED; COMPND 13 CHAIN: A, B; COMPND 14 FRAGMENT: ENGRAILED HOMEODOMAIN; COMPND 15 SYNONYM: HOMEOBOX; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SOLID-PHASE DNA SYNTHESIS; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: COMMERCIAL SOLID-PHASE DNA SYNTHESIS; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 9 ORGANISM_COMMON: FRUIT FLY; SOURCE 10 ORGANISM_TAXID: 7227; SOURCE 11 GENE: EN; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PMAL-C2; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PMAL-ENHDF KEYWDS HOMEODOMAIN, PHAGE DISPLAY, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.E.FELDMAN,M.D.SIMON,K.M.SHOKAT REVDAT 7 14-FEB-24 2HOT 1 REMARK REVDAT 6 20-OCT-21 2HOT 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2HOT 1 REMARK REVDAT 4 13-JUL-11 2HOT 1 VERSN REVDAT 3 24-FEB-09 2HOT 1 VERSN REVDAT 2 08-MAY-07 2HOT 1 JRNL REVDAT 1 12-DEC-06 2HOT 0 JRNL AUTH M.D.SIMON,M.E.FELDMAN,D.RAUH,A.E.MARIS,D.E.WEMMER,K.M.SHOKAT JRNL TITL STRUCTURE AND PROPERTIES OF A RE-ENGINEERED HOMEODOMAIN JRNL TITL 2 PROTEIN-DNA INTERFACE. JRNL REF ACS CHEM.BIOL. V. 1 755 2006 JRNL REFN ISSN 1554-8929 JRNL PMID 17240973 JRNL DOI 10.1021/CB6003756 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 15927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 832 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 938 REMARK 3 NUCLEIC ACID ATOMS : 854 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1926 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2756 ; 1.660 ; 2.518 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 112 ; 4.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;30.250 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 197 ;13.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 295 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1163 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 601 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1185 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 585 ; 0.632 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 895 ; 1.032 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1817 ; 1.512 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1861 ; 2.440 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1870 29.3670 33.0710 REMARK 3 T TENSOR REMARK 3 T11: .0214 T22: -.1818 REMARK 3 T33: -.2091 T12: -.0269 REMARK 3 T13: .1143 T23: .0115 REMARK 3 L TENSOR REMARK 3 L11: 2.6828 L22: 12.3002 REMARK 3 L33: 5.5397 L12: -.6772 REMARK 3 L13: -.2233 L23: 1.7250 REMARK 3 S TENSOR REMARK 3 S11: .0198 S12: .0077 S13: -.0476 REMARK 3 S21: -.7935 S22: -.0620 S23: -.7270 REMARK 3 S31: -.0140 S32: .2685 S33: .0422 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0500 20.2410 62.3060 REMARK 3 T TENSOR REMARK 3 T11: -.1070 T22: -.2200 REMARK 3 T33: -.2351 T12: -.0255 REMARK 3 T13: .0476 T23: -.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.2291 L22: 9.7122 REMARK 3 L33: 3.0486 L12: -.7342 REMARK 3 L13: -1.6442 L23: -.8750 REMARK 3 S TENSOR REMARK 3 S11: -.1014 S12: -.0168 S13: -.0182 REMARK 3 S21: .1202 S22: .0717 S23: .1865 REMARK 3 S31: .0554 S32: -.0798 S33: .0297 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 21 REMARK 3 RESIDUE RANGE : D 22 D 42 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0810 28.3670 48.0200 REMARK 3 T TENSOR REMARK 3 T11: .0351 T22: .3027 REMARK 3 T33: .1206 T12: -.1352 REMARK 3 T13: -.0793 T23: .0454 REMARK 3 L TENSOR REMARK 3 L11: 10.0942 L22: .3092 REMARK 3 L33: .0438 L12: 1.7600 REMARK 3 L13: -.5841 L23: -.0971 REMARK 3 S TENSOR REMARK 3 S11: -.3632 S12: -.1037 S13: -.5070 REMARK 3 S21: -.0403 S22: .2098 S23: -.3674 REMARK 3 S31: -.0539 S32: .2261 S33: .1534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11588 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KOHZU:DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-400/NH4OAC, PH 7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.92800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.52300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.92800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.52300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 0 REMARK 465 GLU A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 4 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 ASP B 0 REMARK 465 GLU B 1 REMARK 465 THR B 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 GLU A 22 CD OE1 OE2 REMARK 470 ARG A 29 CD NE CZ NH1 NH2 REMARK 470 LYS A 57 CD CE NZ REMARK 470 LYS A 58 CD CE NZ REMARK 470 THR A 60 CB OG1 CG2 REMARK 470 GLU B 11 OE1 OE2 REMARK 470 ARG B 29 CZ NH1 NH2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT C 4 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC C 6 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DC C 7 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 11 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC C 17 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DG C 19 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG C 20 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DA D 22 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT D 23 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC D 24 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG D 26 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG D 27 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG D 29 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT D 31 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC D 34 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT D 36 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC D 39 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DC D 39 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P2O C 22 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HDD RELATED DB: PDB REMARK 900 ENGRAILED HOMEODOMAIN Q50K MUTANT BOUND TO THE SAME DNA BUT REMARK 900 UNMODIFIED REMARK 900 RELATED ID: 2HOS RELATED DB: PDB DBREF 2HOT A 0 60 UNP P02836 HMEN_DROME 453 513 DBREF 2HOT B 0 60 UNP P02836 HMEN_DROME 453 513 DBREF 2HOT C 1 21 PDB 2HOT 2HOT 1 21 DBREF 2HOT D 22 42 PDB 2HOT 2HOT 22 42 SEQADV 2HOT GLY A -2 UNP P02836 CLONING ARTIFACT SEQADV 2HOT SER A -1 UNP P02836 CLONING ARTIFACT SEQADV 2HOT VAL A 45 UNP P02836 ILE 498 ENGINEERED MUTATION SEQADV 2HOT GLY A 47 UNP P02836 ILE 500 ENGINEERED MUTATION SEQADV 2HOT LYS A 50 UNP P02836 GLN 503 ENGINEERED MUTATION SEQADV 2HOT MET A 52 UNP P02836 LYS 505 ENGINEERED MUTATION SEQADV 2HOT GLY B -2 UNP P02836 CLONING ARTIFACT SEQADV 2HOT SER B -1 UNP P02836 CLONING ARTIFACT SEQADV 2HOT VAL B 45 UNP P02836 ILE 498 ENGINEERED MUTATION SEQADV 2HOT GLY B 47 UNP P02836 ILE 500 ENGINEERED MUTATION SEQADV 2HOT LYS B 50 UNP P02836 GLN 503 ENGINEERED MUTATION SEQADV 2HOT MET B 52 UNP P02836 LYS 505 ENGINEERED MUTATION SEQRES 1 C 21 DT DT DT DT DG DC DC DA DT DG DT DA DA SEQRES 2 C 21 DT DC DC DC DC DG DG DA SEQRES 1 D 21 DA DT DC DC DG DG DG DG DA DT DT DA DC SEQRES 2 D 21 DA DT DG DG DC DA DA DA SEQRES 1 A 63 GLY SER ASP GLU LYS ARG PRO ARG THR ALA PHE SER SER SEQRES 2 A 63 GLU GLN LEU ALA ARG LEU LYS ARG GLU PHE ASN GLU ASN SEQRES 3 A 63 ARG TYR LEU THR GLU ARG ARG ARG GLN GLN LEU SER SER SEQRES 4 A 63 GLU LEU GLY LEU ASN GLU ALA GLN VAL LYS GLY TRP PHE SEQRES 5 A 63 LYS ASN MET ARG ALA LYS ILE LYS LYS SER THR SEQRES 1 B 63 GLY SER ASP GLU LYS ARG PRO ARG THR ALA PHE SER SER SEQRES 2 B 63 GLU GLN LEU ALA ARG LEU LYS ARG GLU PHE ASN GLU ASN SEQRES 3 B 63 ARG TYR LEU THR GLU ARG ARG ARG GLN GLN LEU SER SER SEQRES 4 B 63 GLU LEU GLY LEU ASN GLU ALA GLN VAL LYS GLY TRP PHE SEQRES 5 B 63 LYS ASN MET ARG ALA LYS ILE LYS LYS SER THR HET P2O C 22 9 HET GOL B 201 6 HET GOL B 202 6 HETNAM P2O 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE HETNAM GOL GLYCEROL HETSYN P2O 1-(PROP-2-YNYL)-OXAZOLIDINE-2-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 P2O C6 H7 N O2 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *80(H2 O) HELIX 1 1 SER A 9 ASN A 23 1 15 HELIX 2 2 THR A 27 GLY A 39 1 13 HELIX 3 3 ASN A 41 THR A 60 1 20 HELIX 4 4 SER B 9 ASN B 21 1 13 HELIX 5 5 THR B 27 GLY B 39 1 13 HELIX 6 6 ASN B 41 SER B 59 1 19 LINK C5 DT C 14 C7 P2O C 22 1555 1555 1.45 SITE 1 AC1 6 ALA A 43 LYS A 46 GLY A 47 LYS A 50 SITE 2 AC1 6 DA C 13 DT C 14 SITE 1 AC2 4 PHE B 20 ASN B 21 ARG B 24 ASN B 41 SITE 1 AC3 7 SER B 9 GLU B 11 GLN B 12 TYR B 25 SITE 2 AC3 7 HOH B 219 DC C 18 HOH C 23 CRYST1 127.856 45.046 73.568 90.00 118.65 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007821 0.000000 0.004273 0.00000 SCALE2 0.000000 0.022200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015489 0.00000