PDB Short entry for 2HPD HEADER OXIDOREDUCTASE(OXYGENASE) 16-SEP-93 2HPD TITLE CRYSTAL STRUCTURE OF HEMOPROTEIN DOMAIN OF P450BM-3, A PROTOTYPE FOR TITLE 2 MICROSOMAL P450'S COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 BM-3; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.14.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL KEYWDS OXIDOREDUCTASE(OXYGENASE) EXPDTA X-RAY DIFFRACTION AUTHOR K.G.RAVICHANDRAN,S.S.BODDUPALLI,C.A.HASEMANN,J.A.PETERSON, AUTHOR 2 J.DEISENHOFER REVDAT 4 14-FEB-24 2HPD 1 REMARK LINK REVDAT 3 24-FEB-09 2HPD 1 VERSN REVDAT 2 01-APR-03 2HPD 1 JRNL REVDAT 1 31-OCT-93 2HPD 0 JRNL AUTH K.G.RAVICHANDRAN,S.S.BODDUPALLI,C.A.HASERMANN,J.A.PETERSON, JRNL AUTH 2 J.DEISENHOFER JRNL TITL CRYSTAL STRUCTURE OF HEMOPROTEIN DOMAIN OF P450BM-3, A JRNL TITL 2 PROTOTYPE FOR MICROSOMAL P450'S. JRNL REF SCIENCE V. 261 731 1993 JRNL REFN ISSN 0036-8075 JRNL PMID 8342039 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.S.BODDUPALLI,C.A.HASEMANN,K.G.RAVICHANDRAN,J.-Y.LU, REMARK 1 AUTH 2 E.J.GOLDSMITH,J.DEISENHOFER,J.A.PETERSON REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF P450TERP AND THE HEMOPROTEIN DOMAIN OF P450BM-3, ENZYMES REMARK 1 TITL 3 BELONGING TO TWO DISTINCT CLASSES OF THE CYTOCHROME P450 REMARK 1 TITL 4 SUPERFAMILY REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 5567 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.J.FULCO REMARK 1 TITL P450BM-3 AND OTHER INDUCIBLE BACTERIAL P450 CYTOCHROMES: REMARK 1 TITL 2 BIOCHEMISTRY AND REGULATION REMARK 1 REF ANNU.REV.PHARMACOL.TOXICOL. V. 31 177 1991 REMARK 1 REFN ISSN 0362-1642 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7356 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE ELECTRON DENSITY FOR THE LOOP REGION BETWEEN THE F AND REMARK 3 G HELICES (RESIDUES 190 - 196) IS POORLY DEFINED FOR BOTH REMARK 3 MOLECULES A AND B. THIS COULD ACCOUNT FOR THE HIGH B REMARK 3 FACTORS OF RESIDUES IN THIS REGION AND FOR THE BAD REMARK 3 CONFORMATION OF THE 195 - 196 PEPTIDE PLANE. REMARK 3 REMARK 3 DIHEDRAL ANGLES OF RESIDUES THR A 436 AND THR B 436 LIE REMARK 3 OUTSIDE THE ALLOWED REGIONS IN THE RAMACHANDRAN PLOT. THIS REMARK 3 MAY BE DUE TO THEIR ROLE IN SUBSTRATE INTERACTIONS. REMARK 4 REMARK 4 2HPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 77.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX 1* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN REMARK 300 APPLIED TO CHAIN *A*, WITH AN RMSD = 0.779480. THE REMARK 300 TRANSFORMATION PRESENTED ON *MTRIX 2* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN *A* WHEN APPLIED TO REMARK 300 CHAIN *B*, WITH AN RMSD = 0.785550. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 458 REMARK 465 PRO A 459 REMARK 465 SER A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 THR A 463 REMARK 465 GLU A 464 REMARK 465 GLN A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 LYS A 469 REMARK 465 VAL A 470 REMARK 465 ARG A 471 REMARK 465 ILE B 458 REMARK 465 PRO B 459 REMARK 465 SER B 460 REMARK 465 PRO B 461 REMARK 465 SER B 462 REMARK 465 THR B 463 REMARK 465 GLU B 464 REMARK 465 GLN B 465 REMARK 465 SER B 466 REMARK 465 ALA B 467 REMARK 465 LYS B 468 REMARK 465 LYS B 469 REMARK 465 VAL B 470 REMARK 465 ARG B 471 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 100 NE2 HIS A 100 CD2 -0.076 REMARK 500 HIS A 116 NE2 HIS A 116 CD2 -0.074 REMARK 500 HIS A 171 NE2 HIS A 171 CD2 -0.082 REMARK 500 HIS A 236 NE2 HIS A 236 CD2 -0.067 REMARK 500 HIS A 266 NE2 HIS A 266 CD2 -0.067 REMARK 500 HIS A 388 NE2 HIS A 388 CD2 -0.069 REMARK 500 HIS A 408 NE2 HIS A 408 CD2 -0.080 REMARK 500 HIS A 420 NE2 HIS A 420 CD2 -0.068 REMARK 500 HIS B 116 NE2 HIS B 116 CD2 -0.073 REMARK 500 HIS B 138 NE2 HIS B 138 CD2 -0.068 REMARK 500 HIS B 361 NE2 HIS B 361 CD2 -0.079 REMARK 500 HIS B 388 NE2 HIS B 388 CD2 -0.078 REMARK 500 HIS B 408 NE2 HIS B 408 CD2 -0.069 REMARK 500 HIS B 420 NE2 HIS B 420 CD2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 4 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TRP A 90 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 90 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 96 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP A 96 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP A 96 CG - CD2 - CE3 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL A 127 CG1 - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 TRP A 130 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 214 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 214 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 223 CG - CD - NE ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 255 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 255 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 HIS A 266 CB - CG - CD2 ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 296 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 TRP A 325 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP A 325 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP A 325 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 MET A 354 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 362 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TRP A 367 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 367 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 378 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 378 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 398 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 MET A 416 CG - SD - CE ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG B 50 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 56 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 79 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU B 86 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 TRP B 90 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 90 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 TRP B 96 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP B 96 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 MET B 112 CG - SD - CE ANGL. DEV. = 11.4 DEGREES REMARK 500 TRP B 130 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 130 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 132 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 132 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 161 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 69 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 5 105.41 68.69 REMARK 500 GLU A 13 -40.33 82.56 REMARK 500 LYS A 15 -123.02 48.60 REMARK 500 LYS A 24 69.48 -115.63 REMARK 500 GLU A 38 -9.66 -58.01 REMARK 500 ASP A 84 46.08 -93.92 REMARK 500 ARG A 190 92.76 -68.10 REMARK 500 ASN A 192 71.73 -112.45 REMARK 500 PRO A 193 -167.65 -70.57 REMARK 500 ASP A 194 -84.75 59.33 REMARK 500 PRO A 196 -130.13 -102.18 REMARK 500 ASP A 199 -9.22 -58.68 REMARK 500 ASP A 231 40.35 -104.58 REMARK 500 GLU A 344 -17.36 -144.60 REMARK 500 ASP A 370 36.36 -82.02 REMARK 500 THR A 436 -128.88 -128.80 REMARK 500 LYS B 15 -129.85 50.61 REMARK 500 ASN B 21 70.54 -105.90 REMARK 500 ASP B 84 44.03 -97.12 REMARK 500 PHE B 158 30.02 -147.37 REMARK 500 ASP B 194 -11.03 72.41 REMARK 500 PRO B 196 92.08 -66.55 REMARK 500 ALA B 197 -49.33 -166.58 REMARK 500 ASP B 231 51.53 -92.67 REMARK 500 ASN B 239 52.54 -105.99 REMARK 500 GLU B 344 -32.53 -135.63 REMARK 500 ASP B 370 45.68 -86.47 REMARK 500 LEU B 431 124.69 -38.68 REMARK 500 THR B 436 -119.41 -127.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 195 PRO A 196 104.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 472 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 472 NA 100.4 REMARK 620 3 HEM A 472 NB 91.9 89.6 REMARK 620 4 HEM A 472 NC 84.9 174.7 90.4 REMARK 620 5 HEM A 472 ND 94.8 88.2 173.2 91.3 REMARK 620 6 HOH A3049 O 171.4 87.3 84.2 87.5 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 472 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 472 NA 98.8 REMARK 620 3 HEM B 472 NB 89.5 89.2 REMARK 620 4 HEM B 472 NC 88.3 172.7 89.0 REMARK 620 5 HEM B 472 ND 97.7 89.8 172.7 91.1 REMARK 620 6 HOH B3050 O 175.0 83.8 86.2 89.0 86.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 472 DBREF 2HPD A 1 471 UNP P14779 CPXB_BACME 1 471 DBREF 2HPD B 1 471 UNP P14779 CPXB_BACME 1 471 SEQRES 1 A 471 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 A 471 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 A 471 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 A 471 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 A 471 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 A 471 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 A 471 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 A 471 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 A 471 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 A 471 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 A 471 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 A 471 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 A 471 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 A 471 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 A 471 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 A 471 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 A 471 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 A 471 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 A 471 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 A 471 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 A 471 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 A 471 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 A 471 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 A 471 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 A 471 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 A 471 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 A 471 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 A 471 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 A 471 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 A 471 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 A 471 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 A 471 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 A 471 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 A 471 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 A 471 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 36 A 471 GLY GLY ILE PRO SER PRO SER THR GLU GLN SER ALA LYS SEQRES 37 A 471 LYS VAL ARG SEQRES 1 B 471 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 B 471 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 B 471 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 B 471 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 B 471 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 B 471 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 B 471 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 B 471 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 B 471 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 B 471 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 B 471 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 B 471 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 B 471 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 B 471 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 B 471 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 B 471 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 B 471 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 B 471 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 B 471 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 B 471 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 B 471 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 B 471 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 B 471 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 B 471 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 B 471 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 B 471 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 B 471 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 B 471 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 B 471 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 B 471 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 B 471 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 B 471 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 B 471 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 B 471 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 B 471 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 36 B 471 GLY GLY ILE PRO SER PRO SER THR GLU GLN SER ALA LYS SEQRES 37 B 471 LYS VAL ARG HET HEM A 472 43 HET HEM B 472 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *455(H2 O) HELIX 1 AA ASN A 16 LEU A 20 5 5 HELIX 2 A1A PRO A 25 GLY A 37 1 13 HELIX 3 BA SER A 54 CYS A 62 1 9 HELIX 4 B'A SER A 72 GLY A 83 1 12 HELIX 5 CA GLU A 93 LEU A 104 1 12 HELIX 6 B1A PRO A 105 SER A 108 5 4 HELIX 7 C1A GLN A 109 LYS A 113 5 5 HELIX 8 DA GLY A 114 ARG A 132 1 19 HELIX 9 EA PRO A 142 PHE A 158 1 17 HELIX 10 D1A ASN A 163 ARG A 167 5 5 HELIX 11 FA PRO A 172 GLN A 189 1 18 HELIX 12 GA ALA A 197 SER A 226 1 30 HELIX 13 HA LEU A 233 ASN A 239 1 7 HELIX 14 IA ASP A 250 LYS A 282 1 33 HELIX 15 JA ASN A 283 LEU A 298 1 16 HELIX 16 J'A SER A 304 GLN A 310 1 7 HELIX 17 KA LEU A 311 TRP A 325 1 15 HELIX 18 K'A ILE A 357 HIS A 361 1 5 HELIX 19 E1A ARG A 375 PHE A 379 5 5 HELIX 20 F1A ASN A 381 ILE A 385 5 5 HELIX 21 LA GLY A 402 LYS A 419 1 18 HELIX 22 AB ASN B 16 LEU B 20 5 5 HELIX 23 A1B PRO B 25 GLY B 37 1 13 HELIX 24 BB SER B 54 CYS B 62 1 9 HELIX 25 B'B SER B 72 GLY B 83 1 12 HELIX 26 CB GLU B 93 LEU B 104 1 12 HELIX 27 B1B PRO B 105 SER B 108 5 4 HELIX 28 C1B GLN B 109 LYS B 113 5 5 HELIX 29 DB GLY B 114 ARG B 132 1 19 HELIX 30 EB PRO B 142 PHE B 158 1 17 HELIX 31 D1B ASN B 163 ARG B 167 5 5 HELIX 32 FB PRO B 172 GLN B 189 1 18 HELIX 33 GB ALA B 197 SER B 226 1 30 HELIX 34 HB LEU B 233 ASN B 239 1 7 HELIX 35 IB ASP B 250 LYS B 282 1 33 HELIX 36 JB ASN B 283 LEU B 298 1 16 HELIX 37 J'B SER B 304 GLN B 310 1 7 HELIX 38 KB LEU B 311 TRP B 325 1 15 HELIX 39 K'B ILE B 357 HIS B 361 1 5 HELIX 40 E1B ARG B 375 PHE B 379 5 5 HELIX 41 F1B ASN B 381 ILE B 385 5 5 HELIX 42 LB GLY B 402 LYS B 419 1 18 SHEET 1 1A 5 GLU A 38 ALA A 44 0 SHEET 2 1A 5 ARG A 47 SER A 53 -1 SHEET 3 1A 5 GLY A 350 LEU A 356 1 SHEET 4 1A 5 PRO A 329 ALA A 335 -1 SHEET 5 1A 5 ARG A 66 ASN A 70 -1 SHEET 1 2A 2 GLU A 337 LEU A 341 0 SHEET 2 2A 2 GLU A 344 GLU A 348 -1 SHEET 1 3A 3 HIS A 138 VAL A 141 0 SHEET 2 3A 3 PHE A 444 LYS A 451 -1 SHEET 3 3A 3 HIS A 420 GLU A 424 -1 SHEET 1 4A 2 ASP A 432 THR A 436 0 SHEET 2 4A 2 THR A 438 GLU A 442 -1 SHEET 1 1B 5 GLU B 38 ALA B 44 0 SHEET 2 1B 5 ARG B 47 SER B 53 -1 SHEET 3 1B 5 GLY B 350 LEU B 356 1 SHEET 4 1B 5 PRO B 329 ALA B 335 -1 SHEET 5 1B 5 ARG B 66 ASN B 70 -1 SHEET 1 2B 2 GLU B 337 LEU B 341 0 SHEET 2 2B 2 GLU B 344 GLU B 348 -1 SHEET 1 3B 3 HIS B 138 VAL B 141 0 SHEET 2 3B 3 PHE B 444 LYS B 451 -1 SHEET 3 3B 3 HIS B 420 GLU B 424 -1 SHEET 1 4B 2 ASP B 432 THR B 436 0 SHEET 2 4B 2 THR B 438 GLU B 442 -1 LINK SG CYS A 400 FE HEM A 472 1555 1555 2.05 LINK FE HEM A 472 O HOH A3049 1555 1555 2.29 LINK SG CYS B 400 FE HEM B 472 1555 1555 2.11 LINK FE HEM B 472 O HOH B3050 1555 1555 2.19 SITE 1 AC1 19 LYS A 69 LEU A 86 TRP A 96 GLY A 265 SITE 2 AC1 19 THR A 268 THR A 269 THR A 327 PHE A 331 SITE 3 AC1 19 PRO A 392 PHE A 393 ARG A 398 ALA A 399 SITE 4 AC1 19 CYS A 400 ILE A 401 HOH A1038 HOH A1040 SITE 5 AC1 19 HOH A1055 HOH A1197 HOH A3049 SITE 1 AC2 26 LYS B 69 LEU B 86 PHE B 87 TRP B 96 SITE 2 AC2 26 THR B 260 PHE B 261 GLY B 265 THR B 268 SITE 3 AC2 26 THR B 269 THR B 327 PHE B 331 PRO B 392 SITE 4 AC2 26 PHE B 393 GLY B 394 ARG B 398 ALA B 399 SITE 5 AC2 26 CYS B 400 ILE B 401 GLY B 402 HOH B2038 SITE 6 AC2 26 HOH B2040 HOH B2055 HOH B2193 HOH B2197 SITE 7 AC2 26 HOH B3038 HOH B3050 CRYST1 59.400 154.000 62.200 90.00 94.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016835 0.000000 0.001384 0.00000 SCALE2 0.000000 0.006494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016131 0.00000 MTRIX1 1 0.999600 0.016600 0.021100 -23.70000 1 MTRIX2 1 0.008100 -0.934400 0.356200 39.90000 1 MTRIX3 1 0.025700 -0.355900 -0.934200 21.20000 1 MTRIX1 2 0.999600 0.008100 0.025700 22.80000 1 MTRIX2 2 0.016700 -0.934400 -0.355900 45.20000 1 MTRIX3 2 0.021100 0.356200 -0.934200 6.18000 1