PDB Short entry for 2HQX HEADER TRANSCRIPTION 19-JUL-06 2HQX TITLE CRYSTAL STRUCTURE OF HUMAN P100 TUDOR DOMAIN CONSERVED REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: P100 CO-ACTIVATOR TUDOR DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CONSERVED REGION; COMPND 5 SYNONYM: P100 CO-ACTIVATOR, 100 KDA COACTIVATOR, EBNA2 COACTIVATOR COMPND 6 P100; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SND1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN P100 TUDOR DOMAIN, PROTEOLYTIC FRAGMENT, PSI, STRUCTURAL KEYWDS 2 GENOMICS, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, SECSG, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHAO,Z.J.LIU,H.XU,J.YANG,O.SILVENNOINEN,B.C.WANG,SOUTHEAST AUTHOR 2 COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 3 30-AUG-23 2HQX 1 SEQADV REVDAT 2 24-FEB-09 2HQX 1 VERSN REVDAT 1 10-OCT-06 2HQX 0 JRNL AUTH M.ZHAO,Z.J.LIU,H.XU,J.YANG,O.SILVENNOINEN,B.C.WANG JRNL TITL CRYSTAL STRUCTURE OF HUMAN P100 TUDOR DOMAIN CONSERVED JRNL TITL 2 REGION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 3 NUMBER OF REFLECTIONS : 25303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 23.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.4500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : -0.11000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1412 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1918 ; 1.210 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 178 ; 4.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;36.932 ;22.581 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 216 ;13.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;23.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 212 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1090 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 730 ; 0.245 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 970 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 187 ; 0.323 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.276 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 922 ; 0.810 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1432 ; 1.348 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 562 ; 2.306 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 486 ; 3.449 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : ROSENBAUM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25303 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 38.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 23.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.03000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PT-SAS REMARK 200 SOFTWARE USED: PHASER, SCA2STRUCTURE REMARK 200 STARTING MODEL: PDB ENTRY 2HQE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 MICROLITER DROPS CONTAINING EQUAL REMARK 280 VOLUMES OF PROTEIN CONCENTRATE (11.0 MG/ML) AND RESERVOIR REMARK 280 SOLUTION CONTAINING 1.06M AMMONIUM SULFATE, 200.0 MM LITHIUM REMARK 280 SULFATE, 0.1M TRIS PH 7.9, MODIFIED MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE INTACT P100 PROTEIN ASSOCIATES AS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A -32 REMARK 465 VAL A -31 REMARK 465 GLU A -30 REMARK 465 GLU A -29 REMARK 465 VAL A -28 REMARK 465 MET A -27 REMARK 465 PRO A -26 REMARK 465 VAL A -25 REMARK 465 LEU A -24 REMARK 465 GLU A -23 REMARK 465 GLU A -22 REMARK 465 LYS A -21 REMARK 465 GLU A -20 REMARK 465 ARG A -19 REMARK 465 SER A -18 REMARK 465 ALA A -17 REMARK 465 SER A -16 REMARK 465 TYR A -15 REMARK 465 LYS A -14 REMARK 465 PRO A -13 REMARK 465 VAL A -12 REMARK 465 PHE A -11 REMARK 465 VAL A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ILE A -7 REMARK 465 THR A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 LEU A -3 REMARK 465 HIS A -2 REMARK 465 PHE A -1 REMARK 465 TYR A 0 REMARK 465 VAL A 1 REMARK 465 GLN A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 98 REMARK 465 TYR A 99 REMARK 465 ALA A 100 REMARK 465 PHE A 101 REMARK 465 ALA A 102 REMARK 465 PHE A 103 REMARK 465 ILE A 104 REMARK 465 GLN A 105 REMARK 465 VAL A 106 REMARK 465 PRO A 107 REMARK 465 GLN A 108 REMARK 465 ASP A 109 REMARK 465 ASP A 110 REMARK 465 ASP A 111 REMARK 465 ALA A 112 REMARK 465 ARG A 113 REMARK 465 THR A 114 REMARK 465 ASP A 115 REMARK 465 ALA A 116 REMARK 465 VAL A 117 REMARK 465 ASP A 118 REMARK 465 SER A 119 REMARK 465 VAL A 120 REMARK 465 VAL A 121 REMARK 465 ARG A 122 REMARK 465 ASP A 123 REMARK 465 ILE A 124 REMARK 465 GLN A 125 REMARK 465 ASN A 126 REMARK 465 THR A 127 REMARK 465 GLN A 128 REMARK 465 CYS A 129 REMARK 465 LEU A 130 REMARK 465 LEU A 131 REMARK 465 ASN A 132 REMARK 465 VAL A 133 REMARK 465 GLU A 134 REMARK 465 HIS A 135 REMARK 465 LEU A 136 REMARK 465 SER A 137 REMARK 465 ALA A 138 REMARK 465 GLY A 139 REMARK 465 CYS A 140 REMARK 465 PRO A 141 REMARK 465 HIS A 142 REMARK 465 VAL A 143 REMARK 465 THR A 144 REMARK 465 LEU A 145 REMARK 465 GLN A 146 REMARK 465 PHE A 147 REMARK 465 ALA A 148 REMARK 465 ASP A 149 REMARK 465 SER A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 ASP A 153 REMARK 465 VAL A 154 REMARK 465 GLY A 155 REMARK 465 LEU A 156 REMARK 465 GLY A 157 REMARK 465 LEU A 158 REMARK 465 VAL A 159 REMARK 465 LYS A 160 REMARK 465 GLU A 161 REMARK 465 GLY A 162 REMARK 465 LEU A 163 REMARK 465 VAL A 164 REMARK 465 MET A 165 REMARK 465 VAL A 166 REMARK 465 GLU A 167 REMARK 465 VAL A 168 REMARK 465 ARG A 169 REMARK 465 LYS A 170 REMARK 465 GLU A 171 REMARK 465 LYS A 172 REMARK 465 GLN A 173 REMARK 465 PHE A 174 REMARK 465 GLN A 175 REMARK 465 LYS A 176 REMARK 465 VAL A 177 REMARK 465 ILE A 178 REMARK 465 THR A 179 REMARK 465 GLU A 180 REMARK 465 TYR A 181 REMARK 465 LEU A 182 REMARK 465 ASN A 183 REMARK 465 ALA A 184 REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 465 ALA A 188 REMARK 465 LYS A 189 REMARK 465 SER A 190 REMARK 465 ALA A 191 REMARK 465 ARG A 192 REMARK 465 LEU A 193 REMARK 465 ASN A 194 REMARK 465 LEU A 195 REMARK 465 TRP A 196 REMARK 465 ARG A 197 REMARK 465 TYR A 198 REMARK 465 GLY A 199 REMARK 465 ASP A 200 REMARK 465 PHE A 201 REMARK 465 ARG A 202 REMARK 465 ALA A 203 REMARK 465 ASP A 204 REMARK 465 ASP A 205 REMARK 465 ALA A 206 REMARK 465 ASP A 207 REMARK 465 GLU A 208 REMARK 465 PHE A 209 REMARK 465 GLY A 210 REMARK 465 TYR A 211 REMARK 465 SER A 212 REMARK 465 ARG A 213 REMARK 465 PRO B -32 REMARK 465 VAL B -31 REMARK 465 GLU B -30 REMARK 465 GLU B -29 REMARK 465 VAL B -28 REMARK 465 MET B -27 REMARK 465 PRO B -26 REMARK 465 VAL B -25 REMARK 465 LEU B -24 REMARK 465 GLU B -23 REMARK 465 GLU B -22 REMARK 465 LYS B -21 REMARK 465 GLU B -20 REMARK 465 ARG B -19 REMARK 465 SER B -18 REMARK 465 ALA B -17 REMARK 465 SER B -16 REMARK 465 TYR B -15 REMARK 465 LYS B -14 REMARK 465 PRO B -13 REMARK 465 VAL B -12 REMARK 465 PHE B -11 REMARK 465 VAL B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ILE B -7 REMARK 465 THR B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 LEU B -3 REMARK 465 HIS B -2 REMARK 465 PHE B -1 REMARK 465 TYR B 0 REMARK 465 VAL B 1 REMARK 465 GLN B 2 REMARK 465 ASP B 3 REMARK 465 VAL B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 GLY B 7 REMARK 465 GLU B 98 REMARK 465 TYR B 99 REMARK 465 ALA B 100 REMARK 465 PHE B 101 REMARK 465 ALA B 102 REMARK 465 PHE B 103 REMARK 465 ILE B 104 REMARK 465 GLN B 105 REMARK 465 VAL B 106 REMARK 465 PRO B 107 REMARK 465 GLN B 108 REMARK 465 ASP B 109 REMARK 465 ASP B 110 REMARK 465 ASP B 111 REMARK 465 ALA B 112 REMARK 465 ARG B 113 REMARK 465 THR B 114 REMARK 465 ASP B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 ASP B 118 REMARK 465 SER B 119 REMARK 465 VAL B 120 REMARK 465 VAL B 121 REMARK 465 ARG B 122 REMARK 465 ASP B 123 REMARK 465 ILE B 124 REMARK 465 GLN B 125 REMARK 465 ASN B 126 REMARK 465 THR B 127 REMARK 465 GLN B 128 REMARK 465 CYS B 129 REMARK 465 LEU B 130 REMARK 465 LEU B 131 REMARK 465 ASN B 132 REMARK 465 VAL B 133 REMARK 465 GLU B 134 REMARK 465 HIS B 135 REMARK 465 LEU B 136 REMARK 465 SER B 137 REMARK 465 ALA B 138 REMARK 465 GLY B 139 REMARK 465 CYS B 140 REMARK 465 PRO B 141 REMARK 465 HIS B 142 REMARK 465 VAL B 143 REMARK 465 THR B 144 REMARK 465 LEU B 145 REMARK 465 GLN B 146 REMARK 465 PHE B 147 REMARK 465 ALA B 148 REMARK 465 ASP B 149 REMARK 465 SER B 150 REMARK 465 LYS B 151 REMARK 465 GLY B 152 REMARK 465 ASP B 153 REMARK 465 VAL B 154 REMARK 465 GLY B 155 REMARK 465 LEU B 156 REMARK 465 GLY B 157 REMARK 465 LEU B 158 REMARK 465 VAL B 159 REMARK 465 LYS B 160 REMARK 465 GLU B 161 REMARK 465 GLY B 162 REMARK 465 LEU B 163 REMARK 465 VAL B 164 REMARK 465 MET B 165 REMARK 465 VAL B 166 REMARK 465 GLU B 167 REMARK 465 VAL B 168 REMARK 465 ARG B 169 REMARK 465 LYS B 170 REMARK 465 GLU B 171 REMARK 465 LYS B 172 REMARK 465 GLN B 173 REMARK 465 PHE B 174 REMARK 465 GLN B 175 REMARK 465 LYS B 176 REMARK 465 VAL B 177 REMARK 465 ILE B 178 REMARK 465 THR B 179 REMARK 465 GLU B 180 REMARK 465 TYR B 181 REMARK 465 LEU B 182 REMARK 465 ASN B 183 REMARK 465 ALA B 184 REMARK 465 GLN B 185 REMARK 465 GLU B 186 REMARK 465 SER B 187 REMARK 465 ALA B 188 REMARK 465 LYS B 189 REMARK 465 SER B 190 REMARK 465 ALA B 191 REMARK 465 ARG B 192 REMARK 465 LEU B 193 REMARK 465 ASN B 194 REMARK 465 LEU B 195 REMARK 465 TRP B 196 REMARK 465 ARG B 197 REMARK 465 TYR B 198 REMARK 465 GLY B 199 REMARK 465 ASP B 200 REMARK 465 PHE B 201 REMARK 465 ARG B 202 REMARK 465 ALA B 203 REMARK 465 ASP B 204 REMARK 465 ASP B 205 REMARK 465 ALA B 206 REMARK 465 ASP B 207 REMARK 465 GLU B 208 REMARK 465 PHE B 209 REMARK 465 GLY B 210 REMARK 465 TYR B 211 REMARK 465 SER B 212 REMARK 465 ARG B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 24 CG ND1 CD2 CE1 NE2 REMARK 470 PRO A 25 CG CD REMARK 470 VAL A 27 CG1 CG2 REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 SER A 30 OG REMARK 470 PRO A 33 CG CD REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 THR A 97 O REMARK 470 HIS B 24 CG ND1 CD2 CE1 NE2 REMARK 470 PRO B 25 CG CD REMARK 470 VAL B 27 CG1 CG2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 SER B 30 OG REMARK 470 PRO B 33 CG CD REMARK 470 ARG B 34 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 THR B 97 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N THR A 8 O HOH A 224 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 33 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HQE RELATED DB: PDB REMARK 900 P100 TUDOR DOMAIN LARGE FRAGMENT REMARK 900 RELATED ID: P100-TDL RELATED DB: TARGETDB REMARK 900 RELATED ID: HSA-P100-TDL RELATED DB: TARGETDB DBREF 2HQX A -32 213 UNP Q7KZF4 SND1_HUMAN 665 910 DBREF 2HQX B -32 213 UNP Q7KZF4 SND1_HUMAN 665 910 SEQADV 2HQX PHE A 10 UNP Q7KZF4 LEU 707 CONFLICT SEQADV 2HQX GLN A 11 UNP Q7KZF4 GLU 708 CONFLICT SEQADV 2HQX PHE B 10 UNP Q7KZF4 LEU 707 CONFLICT SEQADV 2HQX GLN B 11 UNP Q7KZF4 GLU 708 CONFLICT SEQRES 1 A 246 PRO VAL GLU GLU VAL MET PRO VAL LEU GLU GLU LYS GLU SEQRES 2 A 246 ARG SER ALA SER TYR LYS PRO VAL PHE VAL THR GLU ILE SEQRES 3 A 246 THR ASP ASP LEU HIS PHE TYR VAL GLN ASP VAL GLU THR SEQRES 4 A 246 GLY THR GLN PHE GLN LYS LEU MET GLU ASN MET ARG ASN SEQRES 5 A 246 ASP ILE ALA SER HIS PRO PRO VAL GLU GLY SER TYR ALA SEQRES 6 A 246 PRO ARG ARG GLY GLU PHE CYS ILE ALA LYS PHE VAL ASP SEQRES 7 A 246 GLY GLU TRP TYR ARG ALA ARG VAL GLU LYS VAL GLU SER SEQRES 8 A 246 PRO ALA LYS ILE HIS VAL PHE TYR ILE ASP TYR GLY ASN SEQRES 9 A 246 ARG GLU VAL LEU PRO SER THR ARG LEU GLY THR LEU SER SEQRES 10 A 246 PRO ALA PHE SER THR ARG VAL LEU PRO ALA GLN ALA THR SEQRES 11 A 246 GLU TYR ALA PHE ALA PHE ILE GLN VAL PRO GLN ASP ASP SEQRES 12 A 246 ASP ALA ARG THR ASP ALA VAL ASP SER VAL VAL ARG ASP SEQRES 13 A 246 ILE GLN ASN THR GLN CYS LEU LEU ASN VAL GLU HIS LEU SEQRES 14 A 246 SER ALA GLY CYS PRO HIS VAL THR LEU GLN PHE ALA ASP SEQRES 15 A 246 SER LYS GLY ASP VAL GLY LEU GLY LEU VAL LYS GLU GLY SEQRES 16 A 246 LEU VAL MET VAL GLU VAL ARG LYS GLU LYS GLN PHE GLN SEQRES 17 A 246 LYS VAL ILE THR GLU TYR LEU ASN ALA GLN GLU SER ALA SEQRES 18 A 246 LYS SER ALA ARG LEU ASN LEU TRP ARG TYR GLY ASP PHE SEQRES 19 A 246 ARG ALA ASP ASP ALA ASP GLU PHE GLY TYR SER ARG SEQRES 1 B 246 PRO VAL GLU GLU VAL MET PRO VAL LEU GLU GLU LYS GLU SEQRES 2 B 246 ARG SER ALA SER TYR LYS PRO VAL PHE VAL THR GLU ILE SEQRES 3 B 246 THR ASP ASP LEU HIS PHE TYR VAL GLN ASP VAL GLU THR SEQRES 4 B 246 GLY THR GLN PHE GLN LYS LEU MET GLU ASN MET ARG ASN SEQRES 5 B 246 ASP ILE ALA SER HIS PRO PRO VAL GLU GLY SER TYR ALA SEQRES 6 B 246 PRO ARG ARG GLY GLU PHE CYS ILE ALA LYS PHE VAL ASP SEQRES 7 B 246 GLY GLU TRP TYR ARG ALA ARG VAL GLU LYS VAL GLU SER SEQRES 8 B 246 PRO ALA LYS ILE HIS VAL PHE TYR ILE ASP TYR GLY ASN SEQRES 9 B 246 ARG GLU VAL LEU PRO SER THR ARG LEU GLY THR LEU SER SEQRES 10 B 246 PRO ALA PHE SER THR ARG VAL LEU PRO ALA GLN ALA THR SEQRES 11 B 246 GLU TYR ALA PHE ALA PHE ILE GLN VAL PRO GLN ASP ASP SEQRES 12 B 246 ASP ALA ARG THR ASP ALA VAL ASP SER VAL VAL ARG ASP SEQRES 13 B 246 ILE GLN ASN THR GLN CYS LEU LEU ASN VAL GLU HIS LEU SEQRES 14 B 246 SER ALA GLY CYS PRO HIS VAL THR LEU GLN PHE ALA ASP SEQRES 15 B 246 SER LYS GLY ASP VAL GLY LEU GLY LEU VAL LYS GLU GLY SEQRES 16 B 246 LEU VAL MET VAL GLU VAL ARG LYS GLU LYS GLN PHE GLN SEQRES 17 B 246 LYS VAL ILE THR GLU TYR LEU ASN ALA GLN GLU SER ALA SEQRES 18 B 246 LYS SER ALA ARG LEU ASN LEU TRP ARG TYR GLY ASP PHE SEQRES 19 B 246 ARG ALA ASP ASP ALA ASP GLU PHE GLY TYR SER ARG FORMUL 3 HOH *238(H2 O) HELIX 1 1 THR A 8 HIS A 24 1 17 HELIX 2 2 PRO A 76 THR A 78 5 3 HELIX 3 3 SER A 84 SER A 88 5 5 HELIX 4 4 THR B 8 HIS B 24 1 17 HELIX 5 5 PRO B 76 THR B 78 5 3 HELIX 6 6 SER B 84 SER B 88 5 5 SHEET 1 A 5 ARG A 72 LEU A 75 0 SHEET 2 A 5 LYS A 61 TYR A 66 -1 N VAL A 64 O GLU A 73 SHEET 3 A 5 TRP A 48 SER A 58 -1 N LYS A 55 O HIS A 63 SHEET 4 A 5 PHE A 38 LYS A 42 -1 N CYS A 39 O ALA A 51 SHEET 5 A 5 LEU A 80 GLY A 81 -1 O GLY A 81 N ILE A 40 SHEET 1 B 5 ARG B 72 LEU B 75 0 SHEET 2 B 5 LYS B 61 TYR B 66 -1 N VAL B 64 O GLU B 73 SHEET 3 B 5 TRP B 48 SER B 58 -1 N GLU B 54 O HIS B 63 SHEET 4 B 5 PHE B 38 LYS B 42 -1 N CYS B 39 O ALA B 51 SHEET 5 B 5 LEU B 80 GLY B 81 -1 O GLY B 81 N ILE B 40 CRYST1 30.777 37.684 40.202 90.03 105.32 99.72 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032492 0.005566 0.009176 0.00000 SCALE2 0.000000 0.026923 0.001280 0.00000 SCALE3 0.000000 0.000000 0.025820 0.00000