PDB Short entry for 2HXB HEADER HYDROLASE 03-AUG-06 2HXB TITLE DCTP DEAMINASE-DUTPASE FROM METHANOCALDOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: DCTP DEAMINASE, DUMP-FORMING; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BIFUNCTIONAL DEAMINASE/DIPHOSPHATASE, MJDCD-DUT, DCD/DUT; COMPND 5 EC: 3.5.4.30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: DCD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS BETA BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.BYNCK,E.JOHANSSON REVDAT 5 25-OCT-23 2HXB 1 REMARK REVDAT 4 23-MAY-18 2HXB 1 REMARK REVDAT 3 13-JUL-11 2HXB 1 VERSN REVDAT 2 24-FEB-09 2HXB 1 VERSN REVDAT 1 14-AUG-07 2HXB 0 JRNL AUTH J.H.BYNCK,M.WILLEMOES,S.LARSEN,E.JOHANSSON JRNL TITL STRUCTURAL EVIDENCE FOR A CONCERTED BIFUNCTIONALITY IN DCTP JRNL TITL 2 DEAMINASE-DUTPASE FROM METHANOCALDOCOCCUS JANNASCHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 966 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1442 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1316 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1951 ; 1.620 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3078 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 174 ; 6.917 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 221 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1573 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 283 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 218 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1408 ; 0.237 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 894 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 43 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.119 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 87 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0070 REMARK 200 MONOCHROMATOR : MONOCHROMATOR 0.900 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.01270 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG400, 0.2M CALCIUM CHLORIDE REMARK 280 DIHYDRATE, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 85.44800 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 85.44800 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 85.44800 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 85.44800 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 85.44800 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 85.44800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 170.89600 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 170.89600 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 170.89600 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 170.89600 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 23230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 170.89600 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 170.89600 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 170.89600 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 170.89600 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 85.44800 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 85.44800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 256.34400 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 85.44800 REMARK 350 BIOMT2 5 0.000000 0.000000 1.000000 -85.44800 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 85.44800 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 -85.44800 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 85.44800 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 85.44800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 233 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 176 REMARK 465 TYR A 177 REMARK 465 SER A 178 REMARK 465 GLU A 179 REMARK 465 ARG A 180 REMARK 465 LYS A 181 REMARK 465 THR A 182 REMARK 465 SER A 183 REMARK 465 LYS A 184 REMARK 465 TYR A 185 REMARK 465 ALA A 186 REMARK 465 TYR A 187 REMARK 465 GLN A 188 REMARK 465 LYS A 189 REMARK 465 SER A 190 REMARK 465 VAL A 191 REMARK 465 MET A 192 REMARK 465 PRO A 193 REMARK 465 SER A 194 REMARK 465 LEU A 195 REMARK 465 ILE A 196 REMARK 465 HIS A 197 REMARK 465 LEU A 198 REMARK 465 ASP A 199 REMARK 465 ASN A 200 REMARK 465 HIS A 201 REMARK 465 LYS A 202 REMARK 465 LYS A 203 REMARK 465 ASP A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 5 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 174 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 30 42.29 -157.03 REMARK 500 ASN A 63 -52.22 -131.58 REMARK 500 ASN A 73 74.01 57.28 REMARK 500 ASP A 150 -73.49 -122.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OGH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A DIFFERENT SPACEGROUP. REMARK 900 RELATED ID: 2HXD RELATED DB: PDB REMARK 900 MUTANT ENZYME VARIANT E145A DCD-DUT IN COMPLEX WITH ALPHA,BETA- REMARK 900 IMIDO DUTP AND MAGNESIUM. REMARK 900 RELATED ID: 2HXE RELATED DB: PDB REMARK 900 MUTANT ENZYME VARIANT E145Q DCD-DUT IN COMPLEX WITH PYROPHOSPHATE REMARK 900 AND MAGNESIUM. DBREF 2HXB A 1 204 UNP Q57872 DCD_METJA 1 204 SEQRES 1 A 204 MET ILE LEU SER ASP LYS ASP ILE ILE ASP TYR VAL THR SEQRES 2 A 204 SER LYS ARG ILE ILE ILE LYS PRO PHE ASN LYS ASP PHE SEQRES 3 A 204 VAL GLY PRO CYS SER TYR ASP VAL THR LEU GLY ASP GLU SEQRES 4 A 204 PHE ILE ILE TYR ASP ASP GLU VAL TYR ASP LEU SER LYS SEQRES 5 A 204 GLU LEU ASN TYR LYS ARG ILE LYS ILE LYS ASN SER ILE SEQRES 6 A 204 LEU VAL CYS PRO LEU ASN TYR ASN LEU THR GLU GLU LYS SEQRES 7 A 204 ILE ASN TYR PHE LYS GLU LYS TYR ASN VAL ASP TYR VAL SEQRES 8 A 204 VAL GLU GLY GLY VAL LEU GLY THR THR ASN GLU TYR ILE SEQRES 9 A 204 GLU LEU PRO ASN ASP ILE SER ALA GLN TYR GLN GLY ARG SEQRES 10 A 204 SER SER LEU GLY ARG VAL PHE LEU THR SER HIS GLN THR SEQRES 11 A 204 ALA GLY TRP ILE ASP ALA GLY PHE LYS GLY LYS ILE THR SEQRES 12 A 204 LEU GLU ILE VAL ALA PHE ASP LYS PRO VAL ILE LEU TYR SEQRES 13 A 204 LYS ASN GLN ARG ILE GLY GLN LEU ILE PHE SER LYS LEU SEQRES 14 A 204 LEU SER PRO ALA ASP VAL GLY TYR SER GLU ARG LYS THR SEQRES 15 A 204 SER LYS TYR ALA TYR GLN LYS SER VAL MET PRO SER LEU SEQRES 16 A 204 ILE HIS LEU ASP ASN HIS LYS LYS ASP FORMUL 2 HOH *46(H2 O) HELIX 1 1 SER A 4 SER A 14 1 11 HELIX 2 2 ASN A 23 VAL A 27 5 5 HELIX 3 3 THR A 75 ASN A 87 1 13 HELIX 4 4 ARG A 117 VAL A 123 1 7 SHEET 1 A 4 ILE A 18 LYS A 20 0 SHEET 2 A 4 VAL A 96 GLU A 105 -1 O TYR A 103 N LYS A 20 SHEET 3 A 4 LYS A 139 ALA A 148 -1 O ILE A 146 N VAL A 96 SHEET 4 A 4 LEU A 125 THR A 126 -1 N THR A 126 O VAL A 147 SHEET 1 B 4 TYR A 32 THR A 35 0 SHEET 2 B 4 ARG A 160 LYS A 168 -1 O GLY A 162 N VAL A 34 SHEET 3 B 4 ILE A 110 GLY A 116 -1 N SER A 111 O SER A 167 SHEET 4 B 4 TRP A 133 ILE A 134 -1 O ILE A 134 N ALA A 112 SHEET 1 C 2 GLU A 39 TYR A 43 0 SHEET 2 C 2 TYR A 56 LYS A 60 -1 O LYS A 57 N ILE A 42 SHEET 1 D 3 TYR A 90 GLU A 93 0 SHEET 2 D 3 SER A 64 CYS A 68 1 N LEU A 66 O TYR A 90 SHEET 3 D 3 VAL A 153 TYR A 156 -1 O VAL A 153 N VAL A 67 CISPEP 1 LYS A 20 PRO A 21 0 -6.72 CRYST1 170.896 170.896 170.896 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005852 0.00000