PDB Short entry for 2HYN HEADER MEMBRANE PROTEIN/SIGNALING PROTEIN 07-AUG-06 2HYN TITLE COMPLETE ENSEMBLE OF NMR STRUCTURES OF UNPHOSPHORYLATED HUMAN TITLE 2 PHOSPHOLAMBAN PENTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARDIAC PHOSPHOLAMBAN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMALC2X KEYWDS SYMMETRIC HOMO-OLIGOMER, PENTAMER, PROTEIN COMPLEX, LEU/ILE ZIPPER, KEYWDS 2 SUPER COIL, CHANNEL, MEMBRANE PROTEIN-SIGNALING PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 184 AUTHOR S.POTLURI,A.K.YAN,J.J.CHOU,B.R.DONALD,C.BAILEY-KELLOGG REVDAT 5 09-MAR-22 2HYN 1 REMARK REVDAT 4 24-FEB-09 2HYN 1 VERSN REVDAT 3 12-SEP-06 2HYN 1 REMARK REVDAT 2 05-SEP-06 2HYN 1 JRNL REVDAT 1 29-AUG-06 2HYN 0 JRNL AUTH S.POTLURI,A.K.YAN,J.J.CHOU,B.R.DONALD,C.BAILEY-KELLOGG JRNL TITL STRUCTURE DETERMINATION OF SYMMETRIC HOMO-OLIGOMERS BY A JRNL TITL 2 COMPLETE SEARCH OF SYMMETRY CONFIGURATION SPACE, USING NMR JRNL TITL 3 RESTRAINTS AND VAN DER WAALS PACKING. JRNL REF PROTEINS V. 65 203 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16897780 JRNL DOI 10.1002/PROT.21091 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.OXENOID,J.J.CHOU REMARK 1 TITL THE STRUCTURE OF PHOSPHOLAMBAN PENTAMER REVEALS A REMARK 1 TITL 2 CHANNEL-LIKE ARCHITECTURE IN MEMBRANES REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 102 10870 2005 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : COMPLETE SCS SEARCH 0, CNS 1.1 REMARK 3 AUTHORS : S. POTLURI, A.K. YAN, B. R. DONALD, C. BAILEY REMARK 3 -KELLOGG (COMPLETE SCS SEARCH), A.T.BRUNGER, REMARK 3 P.D.ADAMS, G.M.CLORE, W.L.DELANO,P.GROS, REMARK 3 R.W.GROSSE-KUNSTLEVE, J.-S.JIANG,J.KUSZEWSKI, REMARK 3 M.NILGES, N.S.PANNU, R.J.READ,L.M.RICE, T.SIMONSON, REMARK 3 G.L.WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. MONOMER STRUCTURE: DETERMINED REMARK 3 WITH SIMULATED ANNEALING PROTOCOL THAT REFINES ALL REMARK 3 INTRAMONOMER NOES, SIDECHAIN J-COUPLINGS, AND BACKBONE RDCS. REMARK 3 2. PENTAMER STRUCTURE: DETERMINED BY OUR COMPLETE REMARK 3 SCS APPROACH. TRADITIONAL NMR PROTOCOLS FOR REMARK 3 SYMMETRIC HOMO-OLIGOMERS (USED FOR STRUCTURES OF PDB ID 1ZLL) REMARK 3 ARE BASED ON SIMULATED ANNEALING TECHNIQUES AND COULD GET REMARK 3 TRAPPED IN LOCAL MINIMA. OUR COMPLETE SCS SEARCH APPROACH REMARK 3 AVOIDS BIAS AND RETURNS ALL CONSISTENT, WELL-PACKED STRUCTURES REMARK 3 TO WITHIN A USER-DEFINED SIMILARITY LEVEL. ENERGY-MINIMIZATION REMARK 3 IS USED ONLY AT A LATER STAGE AFTER THE ENSEMBLE OF STRUCTURES REMARK 3 THAT SATISFY THE DATA HAVE BEEN IDENTIFIED, HENCE ENSURING REMARK 3 THAT NO CONSISTENT WELL-PACKED CONFORMATION IS MISSED. REMARK 4 REMARK 4 2HYN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038916. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 25 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM PHOSPHOLAMBAN PENTAMER, U REMARK 210 -15N, 13C, 85% 2H, 25 MM SODIUM REMARK 210 PHOSPHATE BUFFER, 50 MM BME, 200 REMARK 210 MM DPC, 95% H2O, 5% D2O;0.2 MM REMARK 210 PHOSPHOLAMBAN PENTAMER, U-15N, REMARK 210 13C, 85% 2H, 25 MM SODIUM REMARK 210 PHOSPHATE BUFFER, 50 MM BME, 200 REMARK 210 MM DPC, 4% STRETCHED REMARK 210 POLYACRYLAMIDE GEL,95% H2O, 5% REMARK 210 D2O;0.2 MM PHOSPHOLAMBAN REMARK 210 PENTAMER, U-15N,13C, 25 MM REMARK 210 SODIUM PHOSPHATE BUFFER, 50 MM REMARK 210 BME, 200 MM 2H-DPC, 95% H2O, 5% REMARK 210 D2O;0.2 MM PHOSPHOLAMBAN REMARK 210 PENTAMER, 10% 13C-LABELED, 25 MM REMARK 210 SODIUM PHOSPHATE BUFFER, 50 MM REMARK 210 BME, 200 MM DPC, 95% H2O, 5% D2O; REMARK 210 0.2 MM PHOSPHOLAMBAN PENTAMER, REMARK 210 50% U-15N,13C AND 50% UNLABELED, REMARK 210 25MM SODIUM PHOSPHATE BUFFER, 50 REMARK 210 MM BME, 200 MM 2H-DPC, 95% H2O, REMARK 210 5% D2O;0.2 MM PHOSPHOLAMBAN REMARK 210 PENTAMER, 50% U-15N, U-2H AND 50% REMARK 210 UNLABELED,25MM SODIUM PHOSPHATE REMARK 210 BUFFER, 50 MM BME, 200 MM 2H-DPC, REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TROSY-HNCA, HNCACB, HNCACO, REMARK 210 MEASUREMENT OF 1H-15N, 13C'- REMARK 210 13CA, AND 13C'-15N RDCS USING 3D REMARK 210 HNCO BASED EXPERIMENTS, HCCONH, REMARK 210 CCONH, 15N-EDITED NOESY, 13C- REMARK 210 EDITED NOESY, 13C- HSQC FOR REMARK 210 METHYL STEREOSPECIFIC ASSIGNMENT, REMARK 210 DOUBLE 13C- FILTERED, 15N- REMARK 210 EDITED NOESY, 3D 15N-EDITED REMARK 210 NOESY, 2D SPIN-ECHO DIFFERENCE REMARK 210 EXPERIMENTS FOR MEASURING 3-BOND REMARK 210 J(NCG) AND J(CCG) COUPLINGS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : ADAVNCE, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : COMPLETE SCS SEARCH, ENERGY REMARK 210 -MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 184 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 184 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES WERE REMARK 210 SUBMITTED. OUR METHOD GUARANTEES REMARK 210 THAT THE ENSEMBLE REPRESENTS ALL REMARK 210 STRUCTURES THAT SATISFY THE DATA REMARK 210 AND HAVE GOOD VDW PACKING WITHIN REMARK 210 A USER-DEFINED SIMILARITY LEVEL REMARK 210 (CHOSEN AS 1 A). REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -45.83 75.47 REMARK 500 1 PRO A 21 29.63 -78.82 REMARK 500 1 GLN A 22 -70.79 64.63 REMARK 500 1 CYS A 41 -70.29 -59.35 REMARK 500 1 GLU B 2 -46.00 75.62 REMARK 500 1 PRO B 21 29.64 -78.84 REMARK 500 1 GLN B 22 -70.79 64.69 REMARK 500 1 CYS B 41 -70.23 -59.36 REMARK 500 1 GLU C 2 -45.92 75.54 REMARK 500 1 PRO C 21 29.69 -78.83 REMARK 500 1 GLN C 22 -70.75 64.54 REMARK 500 1 CYS C 41 -70.27 -59.42 REMARK 500 1 GLU D 2 -45.95 75.55 REMARK 500 1 PRO D 21 29.61 -78.74 REMARK 500 1 GLN D 22 -70.83 64.64 REMARK 500 1 CYS D 41 -70.23 -59.46 REMARK 500 1 GLU E 2 -45.91 75.56 REMARK 500 1 PRO E 21 29.55 -78.72 REMARK 500 1 GLN E 22 -70.69 64.60 REMARK 500 1 CYS E 41 -70.27 -59.43 REMARK 500 2 GLU A 2 -46.06 75.63 REMARK 500 2 PRO A 21 29.87 -78.58 REMARK 500 2 GLN A 22 -71.04 64.56 REMARK 500 2 GLU B 2 -46.00 75.61 REMARK 500 2 PRO B 21 29.94 -78.59 REMARK 500 2 GLN B 22 -70.88 64.45 REMARK 500 2 GLU C 2 -46.01 75.56 REMARK 500 2 PRO C 21 30.00 -78.54 REMARK 500 2 GLN C 22 -70.94 64.48 REMARK 500 2 GLU D 2 -46.03 75.61 REMARK 500 2 PRO D 21 29.78 -78.49 REMARK 500 2 GLN D 22 -71.02 64.67 REMARK 500 2 GLU E 2 -46.04 75.61 REMARK 500 2 PRO E 21 29.89 -78.56 REMARK 500 2 GLN E 22 -71.00 64.53 REMARK 500 3 GLU A 2 -45.93 75.55 REMARK 500 3 PRO A 21 29.77 -78.58 REMARK 500 3 GLN A 22 -70.64 64.50 REMARK 500 3 GLU B 2 -45.96 75.66 REMARK 500 3 PRO B 21 29.78 -78.70 REMARK 500 3 GLN B 22 -70.70 64.61 REMARK 500 3 GLU C 2 -45.87 75.55 REMARK 500 3 PRO C 21 29.54 -78.79 REMARK 500 3 GLN C 22 -70.58 64.66 REMARK 500 3 GLU D 2 -45.91 75.55 REMARK 500 3 PRO D 21 29.68 -78.62 REMARK 500 3 GLN D 22 -70.80 64.65 REMARK 500 3 GLU E 2 -45.89 75.55 REMARK 500 3 PRO E 21 29.58 -78.85 REMARK 500 3 GLN E 22 -70.63 64.67 REMARK 500 REMARK 500 THIS ENTRY HAS 2796 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZLL RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH STRUCTURE DETERMINED THROUGH TRADITIONAL NMR REMARK 900 PROTOCOLS DBREF 2HYN A 1 52 UNP P26678 PPLA_HUMAN 1 52 DBREF 2HYN B 1 52 UNP P26678 PPLA_HUMAN 1 52 DBREF 2HYN C 1 52 UNP P26678 PPLA_HUMAN 1 52 DBREF 2HYN D 1 52 UNP P26678 PPLA_HUMAN 1 52 DBREF 2HYN E 1 52 UNP P26678 PPLA_HUMAN 1 52 SEQRES 1 A 52 MET GLU LYS VAL GLN TYR LEU THR ARG SER ALA ILE ARG SEQRES 2 A 52 ARG ALA SER THR ILE GLU MET PRO GLN GLN ALA ARG GLN SEQRES 3 A 52 LYS LEU GLN ASN LEU PHE ILE ASN PHE CYS LEU ILE LEU SEQRES 4 A 52 ILE CYS LEU LEU LEU ILE CYS ILE ILE VAL MET LEU LEU SEQRES 1 B 52 MET GLU LYS VAL GLN TYR LEU THR ARG SER ALA ILE ARG SEQRES 2 B 52 ARG ALA SER THR ILE GLU MET PRO GLN GLN ALA ARG GLN SEQRES 3 B 52 LYS LEU GLN ASN LEU PHE ILE ASN PHE CYS LEU ILE LEU SEQRES 4 B 52 ILE CYS LEU LEU LEU ILE CYS ILE ILE VAL MET LEU LEU SEQRES 1 C 52 MET GLU LYS VAL GLN TYR LEU THR ARG SER ALA ILE ARG SEQRES 2 C 52 ARG ALA SER THR ILE GLU MET PRO GLN GLN ALA ARG GLN SEQRES 3 C 52 LYS LEU GLN ASN LEU PHE ILE ASN PHE CYS LEU ILE LEU SEQRES 4 C 52 ILE CYS LEU LEU LEU ILE CYS ILE ILE VAL MET LEU LEU SEQRES 1 D 52 MET GLU LYS VAL GLN TYR LEU THR ARG SER ALA ILE ARG SEQRES 2 D 52 ARG ALA SER THR ILE GLU MET PRO GLN GLN ALA ARG GLN SEQRES 3 D 52 LYS LEU GLN ASN LEU PHE ILE ASN PHE CYS LEU ILE LEU SEQRES 4 D 52 ILE CYS LEU LEU LEU ILE CYS ILE ILE VAL MET LEU LEU SEQRES 1 E 52 MET GLU LYS VAL GLN TYR LEU THR ARG SER ALA ILE ARG SEQRES 2 E 52 ARG ALA SER THR ILE GLU MET PRO GLN GLN ALA ARG GLN SEQRES 3 E 52 LYS LEU GLN ASN LEU PHE ILE ASN PHE CYS LEU ILE LEU SEQRES 4 E 52 ILE CYS LEU LEU LEU ILE CYS ILE ILE VAL MET LEU LEU HELIX 1 1 GLU A 2 ALA A 15 1 14 HELIX 2 2 GLN A 22 LEU A 52 1 31 HELIX 3 3 GLU B 2 ALA B 15 1 14 HELIX 4 4 GLN B 22 LEU B 52 1 31 HELIX 5 5 GLU C 2 ALA C 15 1 14 HELIX 6 6 GLN C 22 LEU C 52 1 31 HELIX 7 7 GLU D 2 ALA D 15 1 14 HELIX 8 8 GLN D 22 LEU D 52 1 31 HELIX 9 9 GLU E 2 ALA E 15 1 14 HELIX 10 10 GLN E 22 LEU E 52 1 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000