PDB Short entry for 2I3U HEADER HYDROLASE 20-AUG-06 2I3U TITLE STRUCTURAL STUDIES OF PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC TITLE 2 DOMAIN IN COMPLEX WITH INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1662-1973; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE BETA, R-PTP-BETA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRB, PTPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-HISMBP KEYWDS PROTEIN TYROSINE PHOSPHATASE, WPD-LOOP, SULFAMIC ACID, PHOSPHATASE, KEYWDS 2 INHIBITOR, DRUG DESIGN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.G.EVDOKIMOV,M.E.POKROSS,R.L.WALTER,M.MEKEL REVDAT 5 30-AUG-23 2I3U 1 SEQADV REVDAT 4 13-JUL-11 2I3U 1 VERSN REVDAT 3 24-FEB-09 2I3U 1 VERSN REVDAT 2 24-APR-07 2I3U 1 JRNL REVDAT 1 29-AUG-06 2I3U 0 JRNL AUTH A.G.EVDOKIMOV,M.POKROSS,R.WALTER,M.MEKEL,B.COX,C.LI, JRNL AUTH 2 R.BECHARD,F.GENBAUFFE,R.ANDREWS,C.DIVEN,B.HOWARD,V.RASTOGI, JRNL AUTH 3 J.GRAY,M.MAIER,K.G.PETERS JRNL TITL ENGINEERING THE CATALYTIC DOMAIN OF HUMAN PROTEIN TYROSINE JRNL TITL 2 PHOSPHATASE BETA FOR STRUCTURE-BASED DRUG DISCOVERY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 1435 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 17139078 JRNL DOI 10.1107/S0907444906037784 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 27925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1409 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1726 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.312 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2393 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3263 ; 1.194 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 8.983 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;34.601 ;23.280 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;15.703 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1856 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1133 ; 0.254 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1629 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.560 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1461 ; 2.387 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2315 ; 3.225 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1067 ; 4.783 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 936 ; 6.810 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1678 A 1970 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9070 21.7490 14.9190 REMARK 3 T TENSOR REMARK 3 T11: -0.0439 T22: -0.0406 REMARK 3 T33: -0.0439 T12: -0.0144 REMARK 3 T13: 0.0016 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.2665 L22: 0.2070 REMARK 3 L33: 0.5541 L12: -0.0601 REMARK 3 L13: -0.0149 L23: -0.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0320 S12: 0.0225 S13: 0.0227 REMARK 3 S21: 0.0298 S22: 0.0044 S23: 0.0044 REMARK 3 S31: -0.0446 S32: 0.0251 S33: 0.0275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : SI MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 22.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2I3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 8000, 220 MM MGCL2, 1% BME, REMARK 280 0.1% BOG, 5MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 278K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.39250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.26150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.88850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.26150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.39250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.88850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1661 REMARK 465 ASP A 1662 REMARK 465 ARG A 1663 REMARK 465 PRO A 1664 REMARK 465 LEU A 1665 REMARK 465 SER A 1666 REMARK 465 VAL A 1667 REMARK 465 HIS A 1668 REMARK 465 LEU A 1669 REMARK 465 ASN A 1670 REMARK 465 LEU A 1671 REMARK 465 GLY A 1672 REMARK 465 GLN A 1673 REMARK 465 LYS A 1674 REMARK 465 GLY A 1675 REMARK 465 ASN A 1676 REMARK 465 ARG A 1677 REMARK 465 VAL A 1749 REMARK 465 ASP A 1750 REMARK 465 ASP A 1751 REMARK 465 ASP A 1752 REMARK 465 PRO A 1753 REMARK 465 CYS A 1754 REMARK 465 GLN A 1803 REMARK 465 CYS A 1804 REMARK 465 VAL A 1805 REMARK 465 GLU A 1806 REMARK 465 LYS A 1807 REMARK 465 GLY A 1808 REMARK 465 ARG A 1809 REMARK 465 VAL A 1810 REMARK 465 LYS A 1811 REMARK 465 CYS A 1812 REMARK 465 ASP A 1813 REMARK 465 SER A 1971 REMARK 465 GLU A 1972 REMARK 465 GLN A 1973 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 1845 CD1 LEU A 1859 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB PHE A 1768 NH2 ARG A 1970 4455 1.40 REMARK 500 CD2 PHE A 1768 NH1 ARG A 1970 4455 1.44 REMARK 500 CG PHE A 1768 NH2 ARG A 1970 4455 2.15 REMARK 500 CE2 PHE A 1768 NH1 ARG A 1970 4455 2.17 REMARK 500 CD2 PHE A 1768 CZ ARG A 1970 4455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1769 107.79 -1.95 REMARK 500 ARG A1769 104.31 -30.28 REMARK 500 ARG A1770 48.60 75.59 REMARK 500 GLN A1853 -94.88 -131.18 REMARK 500 PRO A1895 3.16 -63.77 REMARK 500 CYS A1904 -146.44 -109.32 REMARK 500 VAL A1908 -129.27 -141.33 REMARK 500 VAL A1947 107.46 67.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 1768 ARG A 1769 109.46 REMARK 500 PHE A 1768 ARG A 1769 125.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HC1 RELATED DB: PDB REMARK 900 ENGINEERED CATALYTIC DOMAIN OF PROTEIN TYROSINE PHOSPHATASE HPTPBETA REMARK 900 RELATED ID: 2HC2 RELATED DB: PDB REMARK 900 ENGINEERED PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC DOMAIN REMARK 900 RELATED ID: 2I3R RELATED DB: PDB REMARK 900 ENGINEERED CATALYTIC DOMAIN OF PROTEIN TYROSINE PHOSPHATASE HPTPBETA DBREF 2I3U A 1662 1973 UNP P23467 PTPRB_HUMAN 1662 1973 SEQADV 2I3U SER A 1661 UNP P23467 CLONING ARTIFACT SEQRES 1 A 313 SER ASP ARG PRO LEU SER VAL HIS LEU ASN LEU GLY GLN SEQRES 2 A 313 LYS GLY ASN ARG LYS THR SER CYS PRO ILE LYS ILE ASN SEQRES 3 A 313 GLN PHE GLU GLY HIS PHE MET LYS LEU GLN ALA ASP SER SEQRES 4 A 313 ASN TYR LEU LEU SER LYS GLU TYR GLU GLU LEU LYS ASP SEQRES 5 A 313 VAL GLY ARG ASN GLN SER CYS ASP ILE ALA LEU LEU PRO SEQRES 6 A 313 GLU ASN ARG GLY LYS ASN ARG TYR ASN ASN ILE LEU PRO SEQRES 7 A 313 TYR ASP ALA THR ARG VAL LYS LEU SER ASN VAL ASP ASP SEQRES 8 A 313 ASP PRO CYS SER ASP TYR ILE ASN ALA SER TYR ILE PRO SEQRES 9 A 313 GLY ASN ASN PHE ARG ARG GLU TYR ILE VAL THR GLN GLY SEQRES 10 A 313 PRO LEU PRO GLY THR LYS ASP ASP PHE TRP LYS MET VAL SEQRES 11 A 313 TRP GLU GLN ASN VAL HIS ASN ILE VAL MET VAL THR GLN SEQRES 12 A 313 CYS VAL GLU LYS GLY ARG VAL LYS CYS ASP HIS TYR TRP SEQRES 13 A 313 PRO ALA ASP GLN ASP SER LEU TYR TYR GLY ASP LEU ILE SEQRES 14 A 313 LEU GLN MET LEU SER GLU SER VAL LEU PRO GLU TRP THR SEQRES 15 A 313 ILE ARG GLU PHE LYS ILE CYS GLY GLU GLU GLN LEU ASP SEQRES 16 A 313 ALA HIS ARG LEU ILE ARG HIS PHE HIS TYR THR VAL TRP SEQRES 17 A 313 PRO ASP HIS GLY VAL PRO GLU THR THR GLN SER LEU ILE SEQRES 18 A 313 GLN PHE VAL ARG THR VAL ARG ASP TYR ILE ASN ARG SER SEQRES 19 A 313 PRO GLY ALA GLY PRO THR VAL VAL HIS CYS SER ALA GLY SEQRES 20 A 313 VAL GLY ARG THR GLY THR PHE ILE ALA LEU ASP ARG ILE SEQRES 21 A 313 LEU GLN GLN LEU ASP SER LYS ASP SER VAL ASP ILE TYR SEQRES 22 A 313 GLY ALA VAL HIS ASP LEU ARG LEU HIS ARG VAL HIS MET SEQRES 23 A 313 VAL GLN THR GLU CYS GLN TYR VAL TYR LEU HIS GLN CYS SEQRES 24 A 313 VAL ARG ASP VAL LEU ARG ALA ARG LYS LEU ARG SER GLU SEQRES 25 A 313 GLN FORMUL 2 HOH *204(H2 O) HELIX 1 1 ILE A 1685 LEU A 1710 1 26 HELIX 2 2 LEU A 1724 ASN A 1731 5 8 HELIX 3 3 TYR A 1739 ALA A 1741 5 3 HELIX 4 4 LEU A 1779 GLY A 1781 5 3 HELIX 5 5 THR A 1782 GLN A 1793 1 12 HELIX 6 6 THR A 1876 SER A 1894 1 19 HELIX 7 7 VAL A 1908 ASP A 1925 1 18 HELIX 8 8 ASP A 1931 ARG A 1943 1 13 HELIX 9 9 THR A 1949 LEU A 1969 1 21 SHEET 1 A 2 ILE A1683 LYS A1684 0 SHEET 2 A 2 SER A1929 VAL A1930 -1 O VAL A1930 N ILE A1683 SHEET 1 B 9 ARG A1743 LYS A1745 0 SHEET 2 B 9 TYR A1757 ILE A1763 -1 O ALA A1760 N VAL A1744 SHEET 3 B 9 TYR A1772 THR A1775 -1 O VAL A1774 N SER A1761 SHEET 4 B 9 THR A1900 HIS A1903 1 O VAL A1902 N ILE A1773 SHEET 5 B 9 ASN A1797 MET A1800 1 N VAL A1799 O VAL A1901 SHEET 6 B 9 ARG A1858 TYR A1865 1 O PHE A1863 N ILE A1798 SHEET 7 B 9 TRP A1841 CYS A1849 -1 N PHE A1846 O ILE A1860 SHEET 8 B 9 LEU A1828 VAL A1837 -1 N LEU A1833 O GLU A1845 SHEET 9 B 9 LEU A1823 TYR A1825 -1 N TYR A1825 O LEU A1828 CRYST1 38.785 69.777 118.523 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008437 0.00000