PDB Short entry for 2I69 HEADER VIRAL PROTEIN 28-AUG-06 2I69 TITLE CRYSTAL STRUCTURE OF THE WEST NILE VIRUS ENVELOPE GLYCOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SOLUBLE ECTODOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WEST NILE VIRUS; SOURCE 3 ORGANISM_TAXID: 11082; SOURCE 4 STRAIN: 2741; SOURCE 5 GENE: ENVELOPE PROTEIN; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: EXPRESSF+; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPSC12 KEYWDS VIRAL MEMBRANE FUSION PROTEIN, RECEPTOR BINDING, ANTIBODY EPITOPE, KEYWDS 2 IGC, BETA SANDWICH, GLYCOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.KANAI,Y.MODIS REVDAT 5 30-AUG-23 2I69 1 HETSYN REVDAT 4 29-JUL-20 2I69 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2I69 1 VERSN REVDAT 2 24-FEB-09 2I69 1 VERSN REVDAT 1 21-NOV-06 2I69 0 JRNL AUTH R.KANAI,K.KAR,K.ANTHONY,L.H.GOULD,M.LEDIZET,E.FIKRIG, JRNL AUTH 2 W.A.MARASCO,R.A.KOSKI,Y.MODIS JRNL TITL CRYSTAL STRUCTURE OF WEST NILE VIRUS ENVELOPE GLYCOPROTEIN JRNL TITL 2 REVEALS VIRAL SURFACE EPITOPES. JRNL REF J.VIROL. V. 80 11000 2006 JRNL REFN ISSN 0022-538X JRNL PMID 16943291 JRNL DOI 10.1128/JVI.01735-06 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 11858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 618 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 86.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 117.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.267 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.433 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.362 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.138 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3155 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4291 ; 1.676 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 7.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;37.385 ;24.180 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 510 ;23.105 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2337 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1324 ; 0.248 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2148 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.049 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2024 ; 3.169 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3212 ; 5.142 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1255 ; 3.378 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1079 ; 5.286 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 51 REMARK 3 RESIDUE RANGE : A 132 A 197 REMARK 3 RESIDUE RANGE : A 282 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0890 59.8480 46.0130 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: 0.1241 REMARK 3 T33: -0.0643 T12: -0.0562 REMARK 3 T13: 0.0797 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 3.7211 L22: 5.7906 REMARK 3 L33: 6.9889 L12: 0.8366 REMARK 3 L13: 0.9232 L23: 2.5250 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: 0.0083 S13: 0.2813 REMARK 3 S21: 0.2714 S22: 0.1727 S23: -0.1269 REMARK 3 S31: -0.3564 S32: 0.3958 S33: -0.0938 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 131 REMARK 3 RESIDUE RANGE : A 198 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0680 105.9920 58.6410 REMARK 3 T TENSOR REMARK 3 T11: 0.8863 T22: 0.2578 REMARK 3 T33: 0.7227 T12: 0.0412 REMARK 3 T13: 0.0865 T23: -0.1666 REMARK 3 L TENSOR REMARK 3 L11: 0.2384 L22: 11.9128 REMARK 3 L33: 1.6442 L12: -1.6853 REMARK 3 L13: -0.6261 L23: 4.4257 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.0657 S13: -0.2371 REMARK 3 S21: 0.4724 S22: -0.1208 S23: 0.5076 REMARK 3 S31: 0.3662 S32: 0.0286 S33: 0.1144 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3010 40.4190 30.0560 REMARK 3 T TENSOR REMARK 3 T11: -0.0143 T22: 0.1316 REMARK 3 T33: 0.0072 T12: -0.0297 REMARK 3 T13: -0.0328 T23: -0.1116 REMARK 3 L TENSOR REMARK 3 L11: 4.9229 L22: 3.1058 REMARK 3 L33: 6.5986 L12: -1.1614 REMARK 3 L13: -0.2994 L23: 2.4669 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: 0.3302 S13: -0.5249 REMARK 3 S21: 0.2448 S22: 0.0068 S23: 0.1246 REMARK 3 S31: 0.7753 S32: -0.0523 S33: 0.0648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2I69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DOUBLY FOCUSING TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13289 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.110 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1ZTX, 1UZG AND 1OAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (V/V) ISOPROPANOL, 0.1 M HEPES PH REMARK 280 7.5, AND 0.2 M NA CITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.65950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.63100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.63100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.82975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.63100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.63100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.48925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.63100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.63100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.82975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.63100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.63100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.48925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.65950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN IS A MONOMER IS SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 28 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 56.22 -94.04 REMARK 500 VAL A 15 116.30 -34.21 REMARK 500 SER A 16 118.24 -34.52 REMARK 500 ASP A 28 65.00 29.19 REMARK 500 ASN A 47 139.99 179.54 REMARK 500 VAL A 56 -77.78 -85.30 REMARK 500 ARG A 57 -131.80 -104.72 REMARK 500 SER A 58 145.01 152.32 REMARK 500 ASP A 67 78.34 45.35 REMARK 500 THR A 76 -18.36 67.91 REMARK 500 LYS A 84 -11.98 -43.93 REMARK 500 TRP A 101 -55.72 -21.75 REMARK 500 ASN A 103 27.92 -149.60 REMARK 500 ILE A 130 76.12 -108.18 REMARK 500 ASN A 154 98.93 -36.68 REMARK 500 ARG A 193 67.48 -174.87 REMARK 500 ASN A 199 27.71 -154.21 REMARK 500 ALA A 200 -120.20 -72.60 REMARK 500 HIS A 214 106.67 -58.86 REMARK 500 ARG A 215 -63.47 -28.68 REMARK 500 ALA A 228 -99.17 -32.22 REMARK 500 THR A 231 69.51 -103.81 REMARK 500 GLU A 237 -25.63 -28.45 REMARK 500 GLU A 243 -163.30 -75.40 REMARK 500 ALA A 247 -65.04 -18.44 REMARK 500 THR A 248 -73.77 -68.59 REMARK 500 ALA A 265 16.25 -67.11 REMARK 500 THR A 357 72.78 -65.69 REMARK 500 SER A 402 -76.81 -98.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 2I69 A 1 403 UNP Q8JU43 Q8JU43_WNV 291 693 SEQRES 1 A 403 PHE ASN CYS LEU GLY MET SER ASN ARG ASP PHE LEU GLU SEQRES 2 A 403 GLY VAL SER GLY ALA THR TRP VAL ASP LEU VAL LEU GLU SEQRES 3 A 403 GLY ASP SER CYS VAL THR ILE MET SER LYS ASP LYS PRO SEQRES 4 A 403 THR ILE ASP VAL LYS MET MET ASN MET GLU ALA ALA ASN SEQRES 5 A 403 LEU ALA GLU VAL ARG SER TYR CYS TYR LEU ALA THR VAL SEQRES 6 A 403 SER ASP LEU SER THR LYS ALA ALA CYS PRO THR MET GLY SEQRES 7 A 403 GLU ALA HIS ASN ASP LYS ARG ALA ASP PRO ALA PHE VAL SEQRES 8 A 403 CYS ARG GLN GLY VAL VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 A 403 CYS GLY LEU PHE GLY LYS GLY SER ILE ASP THR CYS ALA SEQRES 10 A 403 LYS PHE ALA CYS SER THR LYS ALA ILE GLY ARG THR ILE SEQRES 11 A 403 LEU LYS GLU ASN ILE LYS TYR GLU VAL ALA ILE PHE VAL SEQRES 12 A 403 HIS GLY PRO THR THR VAL GLU SER HIS GLY ASN TYR SER SEQRES 13 A 403 THR GLN VAL GLY ALA THR GLN ALA GLY ARG PHE SER ILE SEQRES 14 A 403 THR PRO ALA ALA PRO SER TYR THR LEU LYS LEU GLY GLU SEQRES 15 A 403 TYR GLY GLU VAL THR VAL ASP CYS GLU PRO ARG SER GLY SEQRES 16 A 403 ILE ASP THR ASN ALA TYR TYR VAL MET THR VAL GLY THR SEQRES 17 A 403 LYS THR PHE LEU VAL HIS ARG GLU TRP PHE MET ASP LEU SEQRES 18 A 403 ASN LEU PRO TRP SER SER ALA GLY SER THR VAL TRP ARG SEQRES 19 A 403 ASN ARG GLU THR LEU MET GLU PHE GLU GLU PRO HIS ALA SEQRES 20 A 403 THR LYS GLN SER VAL ILE ALA LEU GLY SER GLN GLU GLY SEQRES 21 A 403 ALA LEU HIS GLN ALA LEU ALA GLY ALA ILE PRO VAL GLU SEQRES 22 A 403 PHE SER SER ASN THR VAL LYS LEU THR SER GLY HIS LEU SEQRES 23 A 403 LYS CYS ARG VAL LYS MET GLU LYS LEU GLN LEU LYS GLY SEQRES 24 A 403 THR THR TYR GLY VAL CYS SER LYS ALA PHE LYS PHE LEU SEQRES 25 A 403 GLY THR PRO ALA ASP THR GLY HIS GLY THR VAL VAL LEU SEQRES 26 A 403 GLU LEU GLN TYR THR GLY THR ASP GLY PRO CYS LYS VAL SEQRES 27 A 403 PRO ILE SER SER VAL ALA SER LEU ASN ASP LEU THR PRO SEQRES 28 A 403 VAL GLY ARG LEU VAL THR VAL ASN PRO PHE VAL SER VAL SEQRES 29 A 403 ALA THR ALA ASN ALA LYS VAL LEU ILE GLU LEU GLU PRO SEQRES 30 A 403 PRO PHE GLY ASP SER TYR ILE VAL VAL GLY ARG GLY GLU SEQRES 31 A 403 GLN GLN ILE ASN HIS HIS TRP HIS LYS SER GLY SER SER MODRES 2I69 ASN A 154 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FUL B 3 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 FUL C6 H12 O5 FORMUL 3 HOH *14(H2 O) HELIX 1 1 ASN A 82 ASP A 87 5 6 HELIX 2 2 GLY A 100 GLY A 104 5 5 HELIX 3 3 LEU A 131 GLU A 133 5 3 HELIX 4 4 ASN A 154 ALA A 161 1 8 HELIX 5 5 GLY A 181 TYR A 183 5 3 HELIX 6 6 HIS A 214 LEU A 221 1 8 HELIX 7 7 GLN A 258 ALA A 265 1 8 HELIX 8 8 PHE A 274 SER A 276 5 3 HELIX 9 9 ARG A 388 GLN A 392 5 5 SHEET 1 A 5 ARG A 9 GLU A 13 0 SHEET 2 A 5 CYS A 30 MET A 34 1 O THR A 32 N LEU A 12 SHEET 3 A 5 ILE A 41 ALA A 51 -1 O VAL A 43 N VAL A 31 SHEET 4 A 5 ILE A 135 VAL A 143 -1 O GLU A 138 N ASN A 47 SHEET 5 A 5 ARG A 166 ILE A 169 -1 O PHE A 167 N VAL A 139 SHEET 1 B 4 ARG A 9 GLU A 13 0 SHEET 2 B 4 CYS A 30 MET A 34 1 O THR A 32 N LEU A 12 SHEET 3 B 4 ILE A 41 ALA A 51 -1 O VAL A 43 N VAL A 31 SHEET 4 B 4 THR A 278 LYS A 280 -1 O VAL A 279 N ALA A 50 SHEET 1 C 4 VAL A 21 GLU A 26 0 SHEET 2 C 4 HIS A 285 LYS A 291 -1 O VAL A 290 N VAL A 21 SHEET 3 C 4 GLU A 185 GLU A 191 -1 N ASP A 189 O ARG A 289 SHEET 4 C 4 SER A 175 LYS A 179 -1 N TYR A 176 O VAL A 188 SHEET 1 D 3 ALA A 54 GLU A 55 0 SHEET 2 D 3 GLY A 109 THR A 129 -1 O THR A 129 N ALA A 54 SHEET 3 D 3 PHE A 90 ARG A 99 -1 N ARG A 99 O GLY A 109 SHEET 1 E 5 TYR A 59 ALA A 73 0 SHEET 2 E 5 GLY A 109 THR A 129 -1 O LYS A 118 N SER A 66 SHEET 3 E 5 TYR A 202 VAL A 206 -1 O THR A 205 N ILE A 126 SHEET 4 E 5 LYS A 209 VAL A 213 -1 O PHE A 211 N MET A 204 SHEET 5 E 5 ILE A 270 VAL A 272 -1 O ILE A 270 N LEU A 212 SHEET 1 F 2 MET A 240 PHE A 242 0 SHEET 2 F 2 VAL A 252 ALA A 254 -1 O ILE A 253 N GLU A 241 SHEET 1 G 3 PHE A 309 PHE A 311 0 SHEET 2 G 3 VAL A 323 TYR A 329 -1 O GLN A 328 N LYS A 310 SHEET 3 G 3 ALA A 316 ASP A 317 -1 N ALA A 316 O VAL A 324 SHEET 1 H 4 PHE A 309 PHE A 311 0 SHEET 2 H 4 VAL A 323 TYR A 329 -1 O GLN A 328 N LYS A 310 SHEET 3 H 4 LYS A 370 GLU A 376 -1 O LEU A 375 N VAL A 323 SHEET 4 H 4 ARG A 354 LEU A 355 -1 N ARG A 354 O GLU A 376 SHEET 1 I 2 CYS A 336 LYS A 337 0 SHEET 2 I 2 PHE A 361 VAL A 362 -1 O VAL A 362 N CYS A 336 SHEET 1 J 3 ILE A 340 VAL A 343 0 SHEET 2 J 3 GLY A 380 VAL A 386 -1 O TYR A 383 N VAL A 343 SHEET 3 J 3 ILE A 393 LYS A 399 -1 O HIS A 395 N ILE A 384 SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.06 SSBOND 2 CYS A 60 CYS A 121 1555 1555 2.08 SSBOND 3 CYS A 74 CYS A 105 1555 1555 2.06 SSBOND 4 CYS A 92 CYS A 116 1555 1555 2.04 SSBOND 5 CYS A 190 CYS A 288 1555 1555 2.06 SSBOND 6 CYS A 305 CYS A 336 1555 1555 2.08 LINK ND2 ASN A 154 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.47 LINK O6 NAG B 1 C1 FUL B 3 1555 1555 1.44 CRYST1 93.262 93.262 159.319 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006277 0.00000