PDB Short entry for 2IAF HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 07-SEP-06 2IAF TITLE CRYSTAL STRUCTURE OF A FRAGMENT (RESIDUES 11 TO 161) OF L-SERINE TITLE 2 DEHYDRATASE FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN SDHL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 11-161; COMPND 5 SYNONYM: L-SERINE DEHYDRATASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: SDHL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS MCSG, PSI2, MAD, STRUCTURAL GENOMICS, L-SERINE DEHYDRATASE, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,R.MULLIGAN,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2IAF 1 VERSN REVDAT 2 24-FEB-09 2IAF 1 VERSN REVDAT 1 10-OCT-06 2IAF 0 JRNL AUTH B.NOCEK,R.MULLIGAN,S.MOY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF A FRAGMENT (RESIDUES 11 TO 161) OF JRNL TITL 2 L-SERINE DEHYDRATASE FROM LEGIONELLA PNEUMOPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 756 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1032 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.589 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1122 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1510 ; 2.009 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 140 ;11.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;34.306 ;25.577 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 204 ;16.310 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;29.645 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 167 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 840 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 486 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 752 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 73 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 717 ; 1.389 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1112 ; 1.996 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 444 ; 2.886 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 398 ; 4.392 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2617 36.6063 14.8667 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.0143 REMARK 3 T33: 0.2224 T12: -0.1278 REMARK 3 T13: 0.0009 T23: -0.1381 REMARK 3 L TENSOR REMARK 3 L11: 23.6968 L22: 33.1165 REMARK 3 L33: 24.6327 L12: 3.1742 REMARK 3 L13: 15.2153 L23: 3.1998 REMARK 3 S TENSOR REMARK 3 S11: -1.8473 S12: 0.1250 S13: 1.2375 REMARK 3 S21: -0.8807 S22: 1.1192 S23: -1.5835 REMARK 3 S31: -1.9158 S32: -0.0883 S33: 0.7280 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6358 26.5133 19.8349 REMARK 3 T TENSOR REMARK 3 T11: -0.0462 T22: 0.1072 REMARK 3 T33: 0.3272 T12: -0.0427 REMARK 3 T13: -0.0139 T23: -0.1649 REMARK 3 L TENSOR REMARK 3 L11: 2.2888 L22: 9.6139 REMARK 3 L33: 7.2549 L12: -1.6516 REMARK 3 L13: 3.9314 L23: -0.7805 REMARK 3 S TENSOR REMARK 3 S11: -0.3254 S12: -0.2192 S13: 0.0401 REMARK 3 S21: 0.3285 S22: 0.5028 S23: -1.5963 REMARK 3 S31: -0.2375 S32: 0.3245 S33: -0.1774 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2838 16.9413 27.3203 REMARK 3 T TENSOR REMARK 3 T11: -0.0502 T22: 0.1185 REMARK 3 T33: 0.3635 T12: 0.0975 REMARK 3 T13: -0.2170 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 1.8186 L22: 30.8515 REMARK 3 L33: 8.7301 L12: 6.5130 REMARK 3 L13: 0.1295 L23: -7.6376 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: -0.5148 S13: -0.4356 REMARK 3 S21: 0.9795 S22: -0.0733 S23: -2.0071 REMARK 3 S31: 0.0423 S32: 0.4865 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5906 11.5527 18.7334 REMARK 3 T TENSOR REMARK 3 T11: -0.0103 T22: 0.0075 REMARK 3 T33: 0.4307 T12: -0.0012 REMARK 3 T13: 0.0250 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 5.4534 L22: 6.8790 REMARK 3 L33: 6.3464 L12: -0.5246 REMARK 3 L13: 1.3860 L23: 0.8958 REMARK 3 S TENSOR REMARK 3 S11: -0.1150 S12: 0.2451 S13: -0.3642 REMARK 3 S21: -0.0795 S22: 0.2014 S23: -1.4402 REMARK 3 S31: 0.1899 S32: 0.0522 S33: -0.0864 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7931 28.9344 13.9490 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.1333 REMARK 3 T33: 0.0665 T12: -0.0436 REMARK 3 T13: 0.0213 T23: -0.1172 REMARK 3 L TENSOR REMARK 3 L11: 1.9380 L22: 7.0353 REMARK 3 L33: 2.7912 L12: -3.3271 REMARK 3 L13: 0.7649 L23: -2.3486 REMARK 3 S TENSOR REMARK 3 S11: -0.2664 S12: 0.0505 S13: -0.0292 REMARK 3 S21: -0.2536 S22: 0.2612 S23: -0.4946 REMARK 3 S31: -0.1767 S32: -0.1825 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5760 29.0437 8.3587 REMARK 3 T TENSOR REMARK 3 T11: 0.1717 T22: 0.0289 REMARK 3 T33: 0.2381 T12: -0.0278 REMARK 3 T13: 0.1756 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 18.0272 L22: 9.6995 REMARK 3 L33: 0.7283 L12: -9.4991 REMARK 3 L13: -0.3634 L23: -1.6482 REMARK 3 S TENSOR REMARK 3 S11: 0.6400 S12: 0.8285 S13: 0.2946 REMARK 3 S21: -1.0503 S22: -0.3601 S23: -0.7037 REMARK 3 S31: -0.1869 S32: -0.0082 S33: -0.2800 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9190 25.9471 14.8244 REMARK 3 T TENSOR REMARK 3 T11: -0.1653 T22: -0.0146 REMARK 3 T33: 0.5416 T12: -0.0616 REMARK 3 T13: 0.1790 T23: -0.1861 REMARK 3 L TENSOR REMARK 3 L11: 8.7479 L22: 24.1857 REMARK 3 L33: 6.7653 L12: 8.1226 REMARK 3 L13: 7.6294 L23: 5.7226 REMARK 3 S TENSOR REMARK 3 S11: -0.3085 S12: -0.5269 S13: -0.0802 REMARK 3 S21: -0.5068 S22: 0.4140 S23: -2.1279 REMARK 3 S31: 0.0645 S32: 0.1195 S33: -0.1055 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6214 28.7818 6.5703 REMARK 3 T TENSOR REMARK 3 T11: -0.0808 T22: -0.0267 REMARK 3 T33: 0.3772 T12: -0.0728 REMARK 3 T13: 0.3568 T23: -0.0789 REMARK 3 L TENSOR REMARK 3 L11: 22.0213 L22: 16.4012 REMARK 3 L33: 18.8911 L12: 18.0307 REMARK 3 L13: 14.9561 L23: 8.4634 REMARK 3 S TENSOR REMARK 3 S11: -1.0288 S12: -0.2244 S13: -0.4533 REMARK 3 S21: -1.2035 S22: 0.5661 S23: -2.3681 REMARK 3 S31: -1.4764 S32: -0.3222 S33: 0.4627 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7051 18.4795 6.8425 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.0099 REMARK 3 T33: 0.3140 T12: -0.0127 REMARK 3 T13: 0.2819 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 0.6039 L22: 4.2659 REMARK 3 L33: 7.2435 L12: 0.6763 REMARK 3 L13: 2.0224 L23: 0.9791 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: 0.1857 S13: -0.0914 REMARK 3 S21: -0.3947 S22: 0.1159 S23: -0.8495 REMARK 3 S31: 0.1294 S32: 0.3026 S33: -0.2210 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1939 16.0357 9.4236 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0358 REMARK 3 T33: 0.2181 T12: -0.0730 REMARK 3 T13: 0.1906 T23: -0.1056 REMARK 3 L TENSOR REMARK 3 L11: 6.0222 L22: 3.6161 REMARK 3 L33: 3.1393 L12: -4.3570 REMARK 3 L13: 2.4224 L23: -1.4993 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: 0.0020 S13: 0.4029 REMARK 3 S21: -0.5677 S22: -0.0601 S23: -0.6766 REMARK 3 S31: 0.1591 S32: -0.0168 S33: -0.0341 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1546 30.1830 17.1556 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.1490 REMARK 3 T33: -0.0309 T12: 0.0093 REMARK 3 T13: -0.0144 T23: -0.0939 REMARK 3 L TENSOR REMARK 3 L11: 5.3335 L22: 7.2776 REMARK 3 L33: 7.3216 L12: 1.8009 REMARK 3 L13: 3.6528 L23: 4.0609 REMARK 3 S TENSOR REMARK 3 S11: -0.1894 S12: -0.2741 S13: 0.3523 REMARK 3 S21: -0.0939 S22: 0.1136 S23: -0.1509 REMARK 3 S31: -0.1004 S32: -0.4924 S33: 0.0758 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0753 14.3665 19.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.0625 T22: 0.1166 REMARK 3 T33: 0.1386 T12: -0.0004 REMARK 3 T13: 0.0355 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 1.7865 L22: 0.8487 REMARK 3 L33: 2.4683 L12: 0.9536 REMARK 3 L13: -0.4809 L23: -1.1481 REMARK 3 S TENSOR REMARK 3 S11: -0.1305 S12: -0.3668 S13: -0.1760 REMARK 3 S21: 0.3053 S22: 0.0983 S23: -0.6185 REMARK 3 S31: 0.1651 S32: 0.0328 S33: 0.0322 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2331 22.8926 24.4890 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.1710 REMARK 3 T33: 0.0652 T12: 0.0202 REMARK 3 T13: -0.0417 T23: -0.1209 REMARK 3 L TENSOR REMARK 3 L11: 1.2844 L22: 10.1506 REMARK 3 L33: 0.8790 L12: 0.3158 REMARK 3 L13: 0.2397 L23: -2.1171 REMARK 3 S TENSOR REMARK 3 S11: -0.1915 S12: -0.4319 S13: 0.0663 REMARK 3 S21: 0.2811 S22: 0.1178 S23: -0.5323 REMARK 3 S31: -0.0273 S32: -0.2143 S33: 0.0737 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6009 37.3957 22.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.0393 REMARK 3 T33: 0.2219 T12: 0.0841 REMARK 3 T13: -0.0441 T23: -0.2336 REMARK 3 L TENSOR REMARK 3 L11: 17.3426 L22: 18.0009 REMARK 3 L33: 15.4341 L12: 4.3410 REMARK 3 L13: 0.4899 L23: -16.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.3529 S12: 0.3695 S13: 0.6186 REMARK 3 S21: 0.2645 S22: -0.3561 S23: -1.2567 REMARK 3 S31: -1.0421 S32: 0.2477 S33: 0.0032 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2915 31.3649 31.1649 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.1413 REMARK 3 T33: 0.0109 T12: 0.1252 REMARK 3 T13: -0.1773 T23: -0.1830 REMARK 3 L TENSOR REMARK 3 L11: 7.9318 L22: 20.6933 REMARK 3 L33: 19.3284 L12: -0.9332 REMARK 3 L13: -3.0236 L23: 4.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.8761 S12: -0.7839 S13: 0.3410 REMARK 3 S21: 0.8800 S22: 0.6991 S23: -0.5358 REMARK 3 S31: 0.1709 S32: -0.0861 S33: 0.1769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-06. REMARK 100 THE RCSB ID CODE IS RCSB039338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.97943 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14934 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, SHELXE, MLPHARE, DM, SOLVE/ REMARK 200 RESOLVE, ARP/WARP, CCP4, O, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 AMMONIUM SULPHATE, 0.1M BISTRIS PH REMARK 280 6.5, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.15950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.06750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.41750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.06750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.15950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.41750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.15950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.41750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.06750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.41750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.15950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.06750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 149 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 197 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 204 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -2 REMARK 465 GLY A -1 REMARK 465 ILE A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 THR A 65 REMARK 465 VAL A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 ALA A 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 85 O GLY A 88 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 7 -51.99 -122.53 REMARK 500 LYS A 89 -108.74 54.01 REMARK 500 ASP A 147 21.21 -73.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 4 SER A 5 43.93 REMARK 500 SER A 5 HIS A 6 144.31 REMARK 500 GLY A 88 LYS A 89 110.29 REMARK 500 ILE A 135 GLY A 136 130.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 72 24.0 L L OUTSIDE RANGE REMARK 500 LYS A 89 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 193 DISTANCE = 5.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 149 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 O REMARK 620 2 LEU A 79 O 85.5 REMARK 620 3 ASN A 82 OD1 92.9 103.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 149 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC86037.3 RELATED DB: TARGETDB DBREF 2IAF A -2 148 UNP Q5WYB1 Q5WYB1_LEGPL 11 161 SEQADV 2IAF MSE A 11 UNP Q5WYB1 MET 24 MODIFIED RESIDUE SEQADV 2IAF MSE A 71 UNP Q5WYB1 MET 84 MODIFIED RESIDUE SEQADV 2IAF MSE A 75 UNP Q5WYB1 MET 88 MODIFIED RESIDUE SEQADV 2IAF MSE A 115 UNP Q5WYB1 MET 128 MODIFIED RESIDUE SEQRES 1 A 151 ILE GLY ILE GLY PRO SER SER SER HIS THR VAL GLY PRO SEQRES 2 A 151 MSE LEU ALA ALA ASN ALA PHE LEU GLN LEU LEU GLU GLN SEQRES 3 A 151 LYS ASN LEU PHE ASP LYS THR GLN ARG VAL LYS VAL GLU SEQRES 4 A 151 LEU TYR GLY SER LEU ALA LEU THR GLY LYS GLY HIS GLY SEQRES 5 A 151 THR ASP LYS ALA ILE LEU ASN GLY LEU GLU ASN LYS ALA SEQRES 6 A 151 PRO GLU THR VAL ASP PRO ALA SER MSE ILE PRO ARG MSE SEQRES 7 A 151 HIS GLU ILE LEU ASP SER ASN LEU LEU ASN LEU ALA GLY SEQRES 8 A 151 LYS LYS GLU ILE PRO PHE HIS GLU ALA THR ASP PHE LEU SEQRES 9 A 151 PHE LEU GLN LYS GLU LEU LEU PRO LYS HIS SER ASN GLY SEQRES 10 A 151 MSE ARG PHE SER ALA PHE ASP GLY ASN ALA ASN LEU LEU SEQRES 11 A 151 ILE GLU GLN VAL TYR TYR SER ILE GLY GLY GLY PHE ILE SEQRES 12 A 151 THR THR GLU GLU ASP PHE ASP LYS MODRES 2IAF MSE A 11 MET SELENOMETHIONINE MODRES 2IAF MSE A 71 MET SELENOMETHIONINE MODRES 2IAF MSE A 75 MET SELENOMETHIONINE MODRES 2IAF MSE A 115 MET SELENOMETHIONINE HET MSE A 11 8 HET MSE A 71 8 HET MSE A 75 8 HET MSE A 115 8 HET MG A 149 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 HOH *87(H2 O) HELIX 1 1 THR A 7 LYS A 24 1 18 HELIX 2 2 GLY A 39 THR A 44 1 6 HELIX 3 3 GLY A 49 LEU A 58 1 10 HELIX 4 4 SER A 70 ASN A 82 1 13 HELIX 5 5 HIS A 95 ASP A 99 1 5 SHEET 1 A 5 PHE A 100 LEU A 103 0 SHEET 2 A 5 ARG A 32 TYR A 38 1 N LEU A 37 O LEU A 101 SHEET 3 A 5 GLY A 114 PHE A 120 -1 O PHE A 120 N ARG A 32 SHEET 4 A 5 LEU A 126 SER A 134 -1 O LEU A 127 N ALA A 119 SHEET 5 A 5 ILE A 140 THR A 142 -1 O THR A 141 N TYR A 133 SHEET 1 B 2 LEU A 83 LEU A 86 0 SHEET 2 B 2 LYS A 90 PRO A 93 -1 O ILE A 92 N LEU A 84 LINK C PRO A 10 N MSE A 11 1555 1555 1.34 LINK C MSE A 11 N LEU A 12 1555 1555 1.34 LINK C SER A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N ILE A 72 1555 1555 1.33 LINK C ARG A 74 N MSE A 75 1555 1555 1.35 LINK C MSE A 75 N HIS A 76 1555 1555 1.33 LINK C GLY A 114 N MSE A 115 1555 1555 1.32 LINK C MSE A 115 N ARG A 116 1555 1555 1.32 LINK MG MG A 149 O ASP A 80 1555 1555 2.63 LINK MG MG A 149 O LEU A 79 1555 1555 2.31 LINK MG MG A 149 OD1 ASN A 82 1555 1555 2.30 LINK MG MG A 149 O LEU A 79 1555 7555 2.31 LINK MG MG A 149 OD1 ASN A 82 1555 7555 2.31 LINK MG MG A 149 O ASP A 80 1555 7555 2.64 CISPEP 1 GLY A 136 GLY A 137 0 -24.33 SITE 1 AC1 3 LEU A 79 ASP A 80 ASN A 82 CRYST1 56.319 76.835 108.135 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009248 0.00000