PDB Short entry for 2IEY HEADER SIGNALING PROTEIN 19-SEP-06 2IEY TITLE CRYSTAL STRUCTURE OF MOUSE RAB27B BOUND TO GDP IN HEXAGONAL SPACE TITLE 2 GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-27B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE DOMAIN; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS RAB27, GTPASE, RAB, SIGNALING PROTEIN, GDP, SWAPPING EXPDTA X-RAY DIFFRACTION AUTHOR L.M.G.CHAVAS,S.TORII,H.KAMIKUBO,M.KAWASAKI,K.IHARA,R.KATO,M.KATAOKA, AUTHOR 2 T.IZUMI,S.WAKATSUKI REVDAT 4 11-APR-12 2IEY 1 JRNL VERSN REVDAT 3 24-FEB-09 2IEY 1 VERSN REVDAT 2 26-JUN-07 2IEY 1 JRNL REVDAT 1 01-MAY-07 2IEY 0 JRNL AUTH L.M.G.CHAVAS,S.TORII,H.KAMIKUBO,M.KAWASAKI,K.IHARA,R.KATO, JRNL AUTH 2 M.KATAOKA,T.IZUMI,S.WAKATSUKI JRNL TITL STRUCTURE OF THE SMALL GTPASE RAB27B SHOWS AN UNEXPECTED JRNL TITL 2 SWAPPED DIMER JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 769 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17582168 JRNL DOI 10.1107/S0907444907019725 REMARK 2 REMARK 2 RESOLUTION. 3.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.292 REMARK 3 R VALUE (WORKING SET) : 0.289 REMARK 3 FREE R VALUE : 0.345 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 570 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.5390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.84000 REMARK 3 B22 (A**2) : 2.84000 REMARK 3 B33 (A**2) : -4.26000 REMARK 3 B12 (A**2) : 1.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.632 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.562 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.885 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.842 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2781 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1890 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3762 ; 1.181 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4572 ; 0.861 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 6.860 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;38.864 ;23.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;19.267 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3016 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 604 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 678 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2065 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1329 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1535 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.285 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.283 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.079 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1958 ; 0.541 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 662 ; 0.063 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2607 ; 0.666 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1366 ; 0.786 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1155 ; 1.107 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 30 REMARK 3 RESIDUE RANGE : A 94 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7267 -6.5438 -15.9995 REMARK 3 T TENSOR REMARK 3 T11: -0.7709 T22: -0.1671 REMARK 3 T33: -0.4854 T12: -0.1081 REMARK 3 T13: 0.2213 T23: -0.4579 REMARK 3 L TENSOR REMARK 3 L11: 0.9191 L22: 7.9377 REMARK 3 L33: 11.8010 L12: -0.2505 REMARK 3 L13: 3.2435 L23: 0.7861 REMARK 3 S TENSOR REMARK 3 S11: 0.1294 S12: 0.1345 S13: 0.2867 REMARK 3 S21: -0.3808 S22: 0.1520 S23: -1.0358 REMARK 3 S31: -0.4919 S32: 0.0282 S33: -0.2814 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 30 REMARK 3 RESIDUE RANGE : B 94 B 184 REMARK 3 ORIGIN FOR THE GROUP (A): 61.8546 -15.2773 -6.4588 REMARK 3 T TENSOR REMARK 3 T11: -0.3500 T22: 0.9016 REMARK 3 T33: -0.1198 T12: -0.0931 REMARK 3 T13: 0.0577 T23: -0.4526 REMARK 3 L TENSOR REMARK 3 L11: 2.0217 L22: 4.0779 REMARK 3 L33: 9.0459 L12: 0.3865 REMARK 3 L13: 2.9677 L23: 4.9006 REMARK 3 S TENSOR REMARK 3 S11: -0.5943 S12: -0.7465 S13: -0.9018 REMARK 3 S21: 0.9104 S22: -0.1003 S23: 0.8916 REMARK 3 S31: 0.5957 S32: -2.3291 S33: 0.6946 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-SEP-06. REMARK 100 THE RCSB ID CODE IS RCSB039499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUAMTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9142 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.180 REMARK 200 RESOLUTION RANGE LOW (A) : 63.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.800 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 10000, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 253.32533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.66267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 189.99400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.33133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 316.65667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 253.32533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 126.66267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 63.33133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 189.99400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 316.65667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAIN A AND CHAIN B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 33.03050 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -57.21050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -63.33133 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 THR A 55 REMARK 465 GLN A 56 REMARK 465 GLY A 57 REMARK 465 ALA A 58 REMARK 465 ASP A 59 REMARK 465 GLY A 60 REMARK 465 ALA A 61 REMARK 465 SER A 62 REMARK 465 GLY A 63 REMARK 465 LYS A 64 REMARK 465 ALA A 65 REMARK 465 ALA A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 GLU A 79 REMARK 465 ARG A 80 REMARK 465 PHE A 81 REMARK 465 ARG A 82 REMARK 465 GLU A 186 REMARK 465 LYS A 187 REMARK 465 CYS A 188 REMARK 465 VAL A 189 REMARK 465 GLU A 190 REMARK 465 LYS A 191 REMARK 465 THR A 192 REMARK 465 GLN A 193 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 4 REMARK 465 GLN B 56 REMARK 465 GLY B 57 REMARK 465 ALA B 58 REMARK 465 ASP B 59 REMARK 465 GLY B 60 REMARK 465 ALA B 61 REMARK 465 SER B 62 REMARK 465 GLY B 63 REMARK 465 GLN B 116 REMARK 465 LEU B 117 REMARK 465 GLN B 118 REMARK 465 ALA B 119 REMARK 465 ASN B 120 REMARK 465 ALA B 121 REMARK 465 TYR B 122 REMARK 465 CYS B 123 REMARK 465 GLU B 124 REMARK 465 MSE B 185 REMARK 465 GLU B 186 REMARK 465 LYS B 187 REMARK 465 CYS B 188 REMARK 465 VAL B 189 REMARK 465 GLU B 190 REMARK 465 LYS B 191 REMARK 465 THR B 192 REMARK 465 GLN B 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 43.13 -150.00 REMARK 500 THR A 30 -68.08 -124.81 REMARK 500 ASP A 31 110.24 95.26 REMARK 500 ASN A 32 98.29 31.98 REMARK 500 LYS A 33 59.43 -150.70 REMARK 500 ASP A 91 -18.58 76.44 REMARK 500 ALA A 92 103.42 -45.46 REMARK 500 THR A 102 41.97 -92.91 REMARK 500 SER A 103 97.92 -169.04 REMARK 500 ARG A 111 -38.94 -38.63 REMARK 500 PRO A 126 -168.42 -78.31 REMARK 500 LYS A 134 31.79 71.81 REMARK 500 LEU A 137 76.04 -115.60 REMARK 500 ASN A 169 1.26 58.22 REMARK 500 ASP B 7 -94.31 -102.81 REMARK 500 ASN B 32 -34.69 -147.08 REMARK 500 PHE B 81 33.28 -87.39 REMARK 500 SER B 83 -30.41 -162.16 REMARK 500 ASP B 91 -5.83 70.69 REMARK 500 ASN B 112 65.55 -117.75 REMARK 500 LYS B 134 28.16 84.21 REMARK 500 GLU B 142 10.53 -144.71 REMARK 500 TYR B 155 -99.99 -95.32 REMARK 500 GLN B 168 -86.72 -54.72 REMARK 500 LYS B 183 -65.35 -165.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 1200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IEZ RELATED DB: PDB REMARK 900 RELATED ID: 2IF0 RELATED DB: PDB DBREF 2IEY A 1 193 UNP Q99P58 RB27B_MOUSE 0 192 DBREF 2IEY B 1 193 UNP Q99P58 RB27B_MOUSE 0 192 SEQADV 2IEY GLY A -1 UNP Q99P58 EXPRESSION TAG SEQADV 2IEY SER A 0 UNP Q99P58 EXPRESSION TAG SEQADV 2IEY LEU A 78 UNP Q99P58 GLN 77 ENGINEERED MUTATION SEQADV 2IEY GLY B -1 UNP Q99P58 EXPRESSION TAG SEQADV 2IEY SER B 0 UNP Q99P58 EXPRESSION TAG SEQADV 2IEY LEU B 78 UNP Q99P58 GLN 77 ENGINEERED MUTATION SEQRES 1 A 195 GLY SER MSE THR ASP GLY ASP TYR ASP TYR LEU ILE LYS SEQRES 2 A 195 LEU LEU ALA LEU GLY ASP SER GLY VAL GLY LYS THR THR SEQRES 3 A 195 PHE LEU TYR ARG TYR THR ASP ASN LYS PHE ASN PRO LYS SEQRES 4 A 195 PHE ILE THR THR VAL GLY ILE ASP PHE ARG GLU LYS ARG SEQRES 5 A 195 VAL VAL TYR ASP THR GLN GLY ALA ASP GLY ALA SER GLY SEQRES 6 A 195 LYS ALA PHE LYS VAL HIS LEU GLN LEU TRP ASP THR ALA SEQRES 7 A 195 GLY LEU GLU ARG PHE ARG SER LEU THR THR ALA PHE PHE SEQRES 8 A 195 ARG ASP ALA MSE GLY PHE LEU LEU MSE PHE ASP LEU THR SEQRES 9 A 195 SER GLN GLN SER PHE LEU ASN VAL ARG ASN TRP MSE SER SEQRES 10 A 195 GLN LEU GLN ALA ASN ALA TYR CYS GLU ASN PRO ASP ILE SEQRES 11 A 195 VAL LEU ILE GLY ASN LYS ALA ASP LEU PRO ASP GLN ARG SEQRES 12 A 195 GLU VAL ASN GLU ARG GLN ALA ARG GLU LEU ALA GLU LYS SEQRES 13 A 195 TYR GLY ILE PRO TYR PHE GLU THR SER ALA ALA THR GLY SEQRES 14 A 195 GLN ASN VAL GLU LYS SER VAL GLU THR LEU LEU ASP LEU SEQRES 15 A 195 ILE MSE LYS ARG MSE GLU LYS CYS VAL GLU LYS THR GLN SEQRES 1 B 195 GLY SER MSE THR ASP GLY ASP TYR ASP TYR LEU ILE LYS SEQRES 2 B 195 LEU LEU ALA LEU GLY ASP SER GLY VAL GLY LYS THR THR SEQRES 3 B 195 PHE LEU TYR ARG TYR THR ASP ASN LYS PHE ASN PRO LYS SEQRES 4 B 195 PHE ILE THR THR VAL GLY ILE ASP PHE ARG GLU LYS ARG SEQRES 5 B 195 VAL VAL TYR ASP THR GLN GLY ALA ASP GLY ALA SER GLY SEQRES 6 B 195 LYS ALA PHE LYS VAL HIS LEU GLN LEU TRP ASP THR ALA SEQRES 7 B 195 GLY LEU GLU ARG PHE ARG SER LEU THR THR ALA PHE PHE SEQRES 8 B 195 ARG ASP ALA MSE GLY PHE LEU LEU MSE PHE ASP LEU THR SEQRES 9 B 195 SER GLN GLN SER PHE LEU ASN VAL ARG ASN TRP MSE SER SEQRES 10 B 195 GLN LEU GLN ALA ASN ALA TYR CYS GLU ASN PRO ASP ILE SEQRES 11 B 195 VAL LEU ILE GLY ASN LYS ALA ASP LEU PRO ASP GLN ARG SEQRES 12 B 195 GLU VAL ASN GLU ARG GLN ALA ARG GLU LEU ALA GLU LYS SEQRES 13 B 195 TYR GLY ILE PRO TYR PHE GLU THR SER ALA ALA THR GLY SEQRES 14 B 195 GLN ASN VAL GLU LYS SER VAL GLU THR LEU LEU ASP LEU SEQRES 15 B 195 ILE MSE LYS ARG MSE GLU LYS CYS VAL GLU LYS THR GLN MODRES 2IEY MSE A 93 MET SELENOMETHIONINE MODRES 2IEY MSE A 98 MET SELENOMETHIONINE MODRES 2IEY MSE A 114 MET SELENOMETHIONINE MODRES 2IEY MSE A 182 MET SELENOMETHIONINE MODRES 2IEY MSE A 185 MET SELENOMETHIONINE MODRES 2IEY MSE B 93 MET SELENOMETHIONINE MODRES 2IEY MSE B 98 MET SELENOMETHIONINE MODRES 2IEY MSE B 114 MET SELENOMETHIONINE MODRES 2IEY MSE B 182 MET SELENOMETHIONINE HET MSE A 93 8 HET MSE A 98 8 HET MSE A 114 8 HET MSE A 182 8 HET MSE A 185 8 HET MSE B 93 8 HET MSE B 98 8 HET MSE B 114 8 HET MSE B 182 8 HET GDP A 200 28 HET GDP B1200 28 HETNAM MSE SELENOMETHIONINE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 HOH *11(H2 O) HELIX 1 1 GLY A 21 ASP A 31 1 11 HELIX 2 2 LEU A 84 ARG A 90 1 7 HELIX 3 3 SER A 103 ALA A 121 1 19 HELIX 4 4 ASN A 144 GLY A 156 1 13 HELIX 5 5 ASN A 169 ILE A 181 1 13 HELIX 6 6 GLY B 21 THR B 30 1 10 HELIX 7 7 THR B 75 GLU B 79 1 5 HELIX 8 8 THR B 85 ARG B 90 1 6 HELIX 9 9 SER B 103 ASN B 109 1 7 HELIX 10 10 ASN B 144 TYR B 155 1 12 HELIX 11 11 ASN B 169 MSE B 182 1 14 SHEET 1 A 7 ASN A 35 THR A 41 0 SHEET 2 A 7 THR B 40 TYR B 53 -1 O ILE B 44 N LYS A 37 SHEET 3 A 7 PHE B 66 ASP B 74 -1 O PHE B 66 N TYR B 53 SHEET 4 A 7 TYR A 8 LEU A 15 1 N LEU A 12 O GLN B 71 SHEET 5 A 7 GLY A 94 ASP A 100 1 O LEU A 96 N LEU A 13 SHEET 6 A 7 ASP A 127 ASN A 133 1 O ILE A 131 N LEU A 97 SHEET 7 A 7 TYR A 159 GLU A 161 1 O PHE A 160 N LEU A 130 SHEET 1 B 6 PHE A 46 ARG A 50 0 SHEET 2 B 6 VAL A 68 ASP A 74 -1 O LEU A 72 N PHE A 46 SHEET 3 B 6 LEU B 9 LEU B 15 1 O LEU B 12 N TRP A 73 SHEET 4 B 6 ALA B 92 ASP B 100 1 O LEU B 96 N LEU B 15 SHEET 5 B 6 VAL B 129 ASN B 133 1 O ILE B 131 N LEU B 97 SHEET 6 B 6 TYR B 159 THR B 162 1 O PHE B 160 N GLY B 132 LINK C ALA A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N GLY A 94 1555 1555 1.33 LINK C LEU A 97 N MSE A 98 1555 1555 1.32 LINK C MSE A 98 N PHE A 99 1555 1555 1.33 LINK C TRP A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N SER A 115 1555 1555 1.33 LINK C ILE A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N LYS A 183 1555 1555 1.34 LINK C ARG A 184 N MSE A 185 1555 1555 1.34 LINK C ALA B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N GLY B 94 1555 1555 1.33 LINK C LEU B 97 N MSE B 98 1555 1555 1.33 LINK C MSE B 98 N PHE B 99 1555 1555 1.33 LINK C TRP B 113 N MSE B 114 1555 1555 1.34 LINK C MSE B 114 N SER B 115 1555 1555 1.34 LINK C ILE B 181 N MSE B 182 1555 1555 1.33 LINK C MSE B 182 N LYS B 183 1555 1555 1.33 CISPEP 1 MSE B 114 SER B 115 0 0.76 SITE 1 AC1 14 SER A 18 GLY A 19 VAL A 20 GLY A 21 SITE 2 AC1 14 LYS A 22 THR A 23 THR A 24 ASN A 133 SITE 3 AC1 14 LYS A 134 ASP A 136 SER A 163 ALA A 164 SITE 4 AC1 14 ALA A 165 ALA B 76 SITE 1 AC2 14 ASP B 17 GLY B 19 VAL B 20 GLY B 21 SITE 2 AC2 14 LYS B 22 THR B 23 THR B 24 ASN B 133 SITE 3 AC2 14 LYS B 134 ASP B 136 LEU B 137 SER B 163 SITE 4 AC2 14 ALA B 164 ALA B 165 CRYST1 66.061 66.061 379.988 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015138 0.008740 0.000000 0.00000 SCALE2 0.000000 0.017479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002632 0.00000