PDB Short entry for 2IGY HEADER HYDROLASE 25-SEP-06 2IGY TITLE ACHIRAL, CHEAP AND POTENT INHIBITORS OF PLASMEPSINS II COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMEPSIN-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARTIC HEMOGLOBINASE II, PFAPD; COMPND 5 EC: 3.4.23.39 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833 KEYWDS ACHIRAL INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PRADE REVDAT 3 24-FEB-09 2IGY 1 VERSN REVDAT 2 12-DEC-06 2IGY 1 JRNL REVDAT 1 28-NOV-06 2IGY 0 JRNL AUTH C.BOSS,O.CORMINBOEUF,C.GRISOSTOMI,S.MEYER, JRNL AUTH 2 A.F.JONES,L.PRADE,C.BINKERT,W.FISCHLI,T.WELLER, JRNL AUTH 3 D.BUR JRNL TITL ACHIRAL, CHEAP, AND POTENT INHIBITORS OF JRNL TITL 2 PLASMEPSINS I, II, AND IV. JRNL REF CHEMMEDCHEM V. 1 1341 2006 JRNL REFN ISSN 1860-7179 JRNL PMID 17091526 JRNL DOI 10.1002/CMDC.200600223 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 31701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1695 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2245 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : 1.91000 REMARK 3 B12 (A**2) : -0.64000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.406 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5438 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7402 ; 1.501 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.663 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;38.538 ;25.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 872 ;18.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;25.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 824 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4134 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2214 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3634 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 213 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3345 ; 1.631 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5332 ; 2.714 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2378 ; 1.413 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2070 ; 1.990 ; 4.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2IGY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-06. REMARK 100 THE RCSB ID CODE IS RCSB039557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 54.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 135650.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.28800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.64400 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 24.64400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.28800 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 190 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 293 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 303 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 34 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 137 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 190 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 214 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 225 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP B 303 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -156.60 88.29 REMARK 500 ASN A 3 137.06 82.82 REMARK 500 GLN A 12 73.18 22.17 REMARK 500 ASN A 13 -13.08 39.87 REMARK 500 LYS A 46 2.01 -69.60 REMARK 500 ASP A 69 -28.57 -149.49 REMARK 500 VAL A 78 100.39 -53.67 REMARK 500 SER A 79 78.37 48.67 REMARK 500 LEU A 126 25.59 -143.21 REMARK 500 ASP A 162 16.99 52.46 REMARK 500 LYS A 163 -64.68 -120.13 REMARK 500 LEU A 191 -75.99 -138.51 REMARK 500 PRO A 243 48.86 -70.14 REMARK 500 ASN A 251 96.93 -50.29 REMARK 500 VAL A 280 86.51 -55.85 REMARK 500 SER B 2 -92.13 -82.41 REMARK 500 ASN B 3 156.17 70.12 REMARK 500 GLN B 12 70.04 20.85 REMARK 500 ASN B 13 -19.42 68.55 REMARK 500 GLN B 26 60.64 60.53 REMARK 500 THR B 49 138.42 -30.71 REMARK 500 ASP B 69 -56.16 -122.04 REMARK 500 SER B 79 -48.11 -150.59 REMARK 500 PHE B 111 38.83 -76.06 REMARK 500 THR B 119 48.07 -103.68 REMARK 500 LEU B 126 28.80 -141.54 REMARK 500 ASP B 162 -16.53 67.28 REMARK 500 LEU B 191 -76.85 -155.18 REMARK 500 ASN B 251 108.05 -54.11 REMARK 500 ASN B 288 55.53 -90.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 335 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH B 348 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH A 358 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH B 359 DISTANCE = 8.78 ANGSTROMS REMARK 525 HOH A 367 DISTANCE = 5.77 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A2T B 330 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A2T A 330 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BJU RELATED DB: PDB REMARK 900 RELATED ID: 2IGX RELATED DB: PDB DBREF 2IGY A 1 329 UNP P46925 PLM2_PLAFA 125 453 DBREF 2IGY B 1 329 UNP P46925 PLM2_PLAFA 125 453 SEQRES 1 A 329 SER SER ASN ASP ASN ILE GLU LEU VAL ASP PHE GLN ASN SEQRES 2 A 329 ILE MET PHE TYR GLY ASP ALA GLU VAL GLY ASP ASN GLN SEQRES 3 A 329 GLN PRO PHE THR PHE ILE LEU ASP THR GLY SER ALA ASN SEQRES 4 A 329 LEU TRP VAL PRO SER VAL LYS CYS THR THR ALA GLY CYS SEQRES 5 A 329 LEU THR LYS HIS LEU TYR ASP SER SER LYS SER ARG THR SEQRES 6 A 329 TYR GLU LYS ASP GLY THR LYS VAL GLU MET ASN TYR VAL SEQRES 7 A 329 SER GLY THR VAL SER GLY PHE PHE SER LYS ASP LEU VAL SEQRES 8 A 329 THR VAL GLY ASN LEU SER LEU PRO TYR LYS PHE ILE GLU SEQRES 9 A 329 VAL ILE ASP THR ASN GLY PHE GLU PRO THR TYR THR ALA SEQRES 10 A 329 SER THR PHE ASP GLY ILE LEU GLY LEU GLY TRP LYS ASP SEQRES 11 A 329 LEU SER ILE GLY SER VAL ASP PRO ILE VAL VAL GLU LEU SEQRES 12 A 329 LYS ASN GLN ASN LYS ILE GLU ASN ALA LEU PHE THR PHE SEQRES 13 A 329 TYR LEU PRO VAL HIS ASP LYS HIS THR GLY PHE LEU THR SEQRES 14 A 329 ILE GLY GLY ILE GLU GLU ARG PHE TYR GLU GLY PRO LEU SEQRES 15 A 329 THR TYR GLU LYS LEU ASN HIS ASP LEU TYR TRP GLN ILE SEQRES 16 A 329 THR LEU ASP ALA HIS VAL GLY ASN ILE MET LEU GLU LYS SEQRES 17 A 329 ALA ASN CYS ILE VAL ASP SER GLY THR SER ALA ILE THR SEQRES 18 A 329 VAL PRO THR ASP PHE LEU ASN LYS MET LEU GLN ASN LEU SEQRES 19 A 329 ASP VAL ILE LYS VAL PRO PHE LEU PRO PHE TYR VAL THR SEQRES 20 A 329 LEU CYS ASN ASN SER LYS LEU PRO THR PHE GLU PHE THR SEQRES 21 A 329 SER GLU ASN GLY LYS TYR THR LEU GLU PRO GLU TYR TYR SEQRES 22 A 329 LEU GLN HIS ILE GLU ASP VAL GLY PRO GLY LEU CYS MET SEQRES 23 A 329 LEU ASN ILE ILE GLY LEU ASP PHE PRO VAL PRO THR PHE SEQRES 24 A 329 ILE LEU GLY ASP PRO PHE MET ARG LYS TYR PHE THR VAL SEQRES 25 A 329 PHE ASP TYR ASP ASN HIS SER VAL GLY ILE ALA LEU ALA SEQRES 26 A 329 LYS LYS ASN LEU SEQRES 1 B 329 SER SER ASN ASP ASN ILE GLU LEU VAL ASP PHE GLN ASN SEQRES 2 B 329 ILE MET PHE TYR GLY ASP ALA GLU VAL GLY ASP ASN GLN SEQRES 3 B 329 GLN PRO PHE THR PHE ILE LEU ASP THR GLY SER ALA ASN SEQRES 4 B 329 LEU TRP VAL PRO SER VAL LYS CYS THR THR ALA GLY CYS SEQRES 5 B 329 LEU THR LYS HIS LEU TYR ASP SER SER LYS SER ARG THR SEQRES 6 B 329 TYR GLU LYS ASP GLY THR LYS VAL GLU MET ASN TYR VAL SEQRES 7 B 329 SER GLY THR VAL SER GLY PHE PHE SER LYS ASP LEU VAL SEQRES 8 B 329 THR VAL GLY ASN LEU SER LEU PRO TYR LYS PHE ILE GLU SEQRES 9 B 329 VAL ILE ASP THR ASN GLY PHE GLU PRO THR TYR THR ALA SEQRES 10 B 329 SER THR PHE ASP GLY ILE LEU GLY LEU GLY TRP LYS ASP SEQRES 11 B 329 LEU SER ILE GLY SER VAL ASP PRO ILE VAL VAL GLU LEU SEQRES 12 B 329 LYS ASN GLN ASN LYS ILE GLU ASN ALA LEU PHE THR PHE SEQRES 13 B 329 TYR LEU PRO VAL HIS ASP LYS HIS THR GLY PHE LEU THR SEQRES 14 B 329 ILE GLY GLY ILE GLU GLU ARG PHE TYR GLU GLY PRO LEU SEQRES 15 B 329 THR TYR GLU LYS LEU ASN HIS ASP LEU TYR TRP GLN ILE SEQRES 16 B 329 THR LEU ASP ALA HIS VAL GLY ASN ILE MET LEU GLU LYS SEQRES 17 B 329 ALA ASN CYS ILE VAL ASP SER GLY THR SER ALA ILE THR SEQRES 18 B 329 VAL PRO THR ASP PHE LEU ASN LYS MET LEU GLN ASN LEU SEQRES 19 B 329 ASP VAL ILE LYS VAL PRO PHE LEU PRO PHE TYR VAL THR SEQRES 20 B 329 LEU CYS ASN ASN SER LYS LEU PRO THR PHE GLU PHE THR SEQRES 21 B 329 SER GLU ASN GLY LYS TYR THR LEU GLU PRO GLU TYR TYR SEQRES 22 B 329 LEU GLN HIS ILE GLU ASP VAL GLY PRO GLY LEU CYS MET SEQRES 23 B 329 LEU ASN ILE ILE GLY LEU ASP PHE PRO VAL PRO THR PHE SEQRES 24 B 329 ILE LEU GLY ASP PRO PHE MET ARG LYS TYR PHE THR VAL SEQRES 25 B 329 PHE ASP TYR ASP ASN HIS SER VAL GLY ILE ALA LEU ALA SEQRES 26 B 329 LYS LYS ASN LEU HET A2T B 330 40 HET A2T A 330 40 HETNAM A2T N-[1-(3-METHYLBUTYL)PIPERIDIN-4-YL]-N-{4- HETNAM 2 A2T [METHYL(PYRIDIN-4-YL)AMINO]BENZYL}-4-PENTYLBENZAMIDE FORMUL 3 A2T 2(C35 H48 N4 O) FORMUL 5 HOH *74(H2 O) HELIX 1 1 ASP A 59 SER A 63 5 5 HELIX 2 2 PRO A 113 SER A 118 1 6 HELIX 3 3 TRP A 128 SER A 132 5 5 HELIX 4 4 PRO A 138 GLN A 146 1 9 HELIX 5 5 GLU A 174 ARG A 176 5 3 HELIX 6 6 PRO A 223 GLN A 232 1 10 HELIX 7 7 GLU A 269 TYR A 273 1 5 HELIX 8 8 GLY A 302 LYS A 308 1 7 HELIX 9 9 GLY B 51 LYS B 55 5 5 HELIX 10 10 ASP B 59 SER B 63 5 5 HELIX 11 11 PRO B 113 SER B 118 1 6 HELIX 12 12 TRP B 128 VAL B 136 5 9 HELIX 13 13 PRO B 138 GLN B 146 1 9 HELIX 14 14 GLU B 174 ARG B 176 5 3 HELIX 15 15 PRO B 223 GLN B 232 1 10 HELIX 16 16 GLU B 269 TYR B 273 1 5 HELIX 17 17 GLY B 302 LYS B 308 1 7 SHEET 1 A 9 GLU A 67 TYR A 77 0 SHEET 2 A 9 GLY A 80 VAL A 93 -1 O GLY A 84 N VAL A 73 SHEET 3 A 9 MET A 15 VAL A 22 -1 N GLU A 21 O THR A 92 SHEET 4 A 9 ASP A 4 PHE A 11 -1 N PHE A 11 O MET A 15 SHEET 5 A 9 GLY A 166 ILE A 170 -1 O GLY A 166 N LEU A 8 SHEET 6 A 9 LEU A 153 TYR A 157 -1 N TYR A 157 O PHE A 167 SHEET 7 A 9 TYR A 309 ASP A 314 -1 O PHE A 313 N PHE A 154 SHEET 8 A 9 SER A 319 ALA A 325 -1 O ALA A 323 N PHE A 310 SHEET 9 A 9 TYR A 178 LYS A 186 -1 N GLU A 185 O VAL A 320 SHEET 1 B13 GLU A 67 TYR A 77 0 SHEET 2 B13 GLY A 80 VAL A 93 -1 O GLY A 84 N VAL A 73 SHEET 3 B13 LEU A 96 ASP A 107 -1 O PHE A 102 N SER A 87 SHEET 4 B13 LEU A 40 PRO A 43 1 N VAL A 42 O VAL A 105 SHEET 5 B13 GLY A 122 GLY A 125 -1 O ILE A 123 N TRP A 41 SHEET 6 B13 GLN A 27 ASP A 34 1 N ILE A 32 O LEU A 124 SHEET 7 B13 MET A 15 VAL A 22 -1 N GLY A 18 O PHE A 31 SHEET 8 B13 ASP A 4 PHE A 11 -1 N PHE A 11 O MET A 15 SHEET 9 B13 GLY A 166 ILE A 170 -1 O GLY A 166 N LEU A 8 SHEET 10 B13 LEU A 153 TYR A 157 -1 N TYR A 157 O PHE A 167 SHEET 11 B13 TYR A 309 ASP A 314 -1 O PHE A 313 N PHE A 154 SHEET 12 B13 SER A 319 ALA A 325 -1 O ALA A 323 N PHE A 310 SHEET 13 B13 TYR A 178 LYS A 186 -1 N GLU A 185 O VAL A 320 SHEET 1 C 7 LYS A 265 LEU A 268 0 SHEET 2 C 7 PHE A 257 THR A 260 -1 N PHE A 259 O TYR A 266 SHEET 3 C 7 GLN A 194 VAL A 201 -1 N ASP A 198 O THR A 260 SHEET 4 C 7 ILE A 204 VAL A 213 -1 O LEU A 206 N ALA A 199 SHEET 5 C 7 THR A 298 LEU A 301 1 O LEU A 301 N ILE A 212 SHEET 6 C 7 ILE A 220 VAL A 222 -1 N THR A 221 O ILE A 300 SHEET 7 C 7 ILE A 289 GLY A 291 1 O ILE A 290 N VAL A 222 SHEET 1 D 4 ILE A 237 VAL A 239 0 SHEET 2 D 4 PHE A 244 LEU A 248 -1 O VAL A 246 N ILE A 237 SHEET 3 D 4 LEU A 284 LEU A 287 -1 O CYS A 285 N THR A 247 SHEET 4 D 4 LEU A 274 GLU A 278 -1 N ILE A 277 O LEU A 284 SHEET 1 E 9 GLU B 67 ASN B 76 0 SHEET 2 E 9 THR B 81 VAL B 93 -1 O VAL B 82 N MET B 75 SHEET 3 E 9 MET B 15 VAL B 22 -1 N GLU B 21 O THR B 92 SHEET 4 E 9 ASP B 4 PHE B 11 -1 N VAL B 9 O TYR B 17 SHEET 5 E 9 GLY B 166 ILE B 170 -1 O GLY B 166 N LEU B 8 SHEET 6 E 9 LEU B 153 TYR B 157 -1 N THR B 155 O THR B 169 SHEET 7 E 9 TYR B 309 ASP B 314 -1 O PHE B 313 N PHE B 154 SHEET 8 E 9 SER B 319 ALA B 325 -1 O GLY B 321 N VAL B 312 SHEET 9 E 9 TYR B 178 LYS B 186 -1 N GLU B 185 O VAL B 320 SHEET 1 F13 GLU B 67 ASN B 76 0 SHEET 2 F13 THR B 81 VAL B 93 -1 O VAL B 82 N MET B 75 SHEET 3 F13 LEU B 96 ASP B 107 -1 O PHE B 102 N SER B 87 SHEET 4 F13 LEU B 40 PRO B 43 1 N LEU B 40 O ILE B 103 SHEET 5 F13 GLY B 122 GLY B 125 -1 O ILE B 123 N TRP B 41 SHEET 6 F13 GLN B 27 ASP B 34 1 N ILE B 32 O LEU B 124 SHEET 7 F13 MET B 15 VAL B 22 -1 N GLY B 18 O PHE B 31 SHEET 8 F13 ASP B 4 PHE B 11 -1 N VAL B 9 O TYR B 17 SHEET 9 F13 GLY B 166 ILE B 170 -1 O GLY B 166 N LEU B 8 SHEET 10 F13 LEU B 153 TYR B 157 -1 N THR B 155 O THR B 169 SHEET 11 F13 TYR B 309 ASP B 314 -1 O PHE B 313 N PHE B 154 SHEET 12 F13 SER B 319 ALA B 325 -1 O GLY B 321 N VAL B 312 SHEET 13 F13 TYR B 178 LYS B 186 -1 N GLU B 185 O VAL B 320 SHEET 1 G 7 LYS B 265 LEU B 268 0 SHEET 2 G 7 PHE B 257 THR B 260 -1 N PHE B 259 O TYR B 266 SHEET 3 G 7 GLN B 194 VAL B 201 -1 N ASP B 198 O THR B 260 SHEET 4 G 7 ILE B 204 VAL B 213 -1 O ALA B 209 N LEU B 197 SHEET 5 G 7 THR B 298 LEU B 301 1 O PHE B 299 N ILE B 212 SHEET 6 G 7 ILE B 220 VAL B 222 -1 N THR B 221 O ILE B 300 SHEET 7 G 7 ILE B 289 GLY B 291 1 O ILE B 290 N VAL B 222 SHEET 1 H 4 ILE B 237 VAL B 239 0 SHEET 2 H 4 PHE B 244 LEU B 248 -1 O VAL B 246 N ILE B 237 SHEET 3 H 4 LEU B 284 LEU B 287 -1 O CYS B 285 N THR B 247 SHEET 4 H 4 LEU B 274 GLU B 278 -1 N ILE B 277 O LEU B 284 SSBOND 1 CYS A 47 CYS A 52 1555 1555 2.05 SSBOND 2 CYS A 249 CYS A 285 1555 1555 2.07 SSBOND 3 CYS B 47 CYS B 52 1555 1555 2.04 SSBOND 4 CYS B 249 CYS B 285 1555 1555 2.08 CISPEP 1 GLU A 112 PRO A 113 0 10.48 CISPEP 2 GLY A 281 PRO A 282 0 13.66 CISPEP 3 GLU B 112 PRO B 113 0 0.40 SITE 1 AC1 13 ILE B 32 ASP B 34 GLY B 36 TRP B 41 SITE 2 AC1 13 TYR B 77 PHE B 111 TYR B 115 ASP B 121 SITE 3 AC1 13 ILE B 123 ILE B 212 GLY B 216 SER B 218 SITE 4 AC1 13 HOH B 340 SITE 1 AC2 12 ILE A 32 ASP A 34 GLY A 36 TRP A 41 SITE 2 AC2 12 TYR A 77 PHE A 111 ASP A 121 TYR A 192 SITE 3 AC2 12 ILE A 212 GLY A 216 SER A 218 HOH A 352 CRYST1 161.099 161.099 73.932 90.00 90.00 120.00 P 32 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006207 0.003584 0.000000 0.00000 SCALE2 0.000000 0.007168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013526 0.00000