PDB Short entry for 2IKQ HEADER SIGNALING PROTEIN, IMMUNE SYSTEM 02-OCT-06 2IKQ TITLE CRYSTAL STRUCTURE OF MOUSE STS-1 PGM DOMAIN IN COMPLEX WITH PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR OF T-CELL RECEPTOR SIGNALING 1; COMPND 3 CHAIN: A, B, M; COMPND 4 FRAGMENT: PHOSPHOGLYCERATE MUTASE HOMOLOGY DOMAIN, RESIDUES 373-633; COMPND 5 SYNONYM: STS-1; CBL-INTERACTING PROTEIN P70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: STS-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-2HB KEYWDS PGM; ACID PHOSPHATASE; PHOSPHO-HISTIDINE ENZYME, SIGNALING PROTEIN, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,N.NASSAR REVDAT 4 30-AUG-23 2IKQ 1 REMARK REVDAT 3 13-JUL-11 2IKQ 1 VERSN REVDAT 2 24-FEB-09 2IKQ 1 VERSN REVDAT 1 14-AUG-07 2IKQ 0 JRNL AUTH A.MIKHAILIK,B.FORD,J.KELLER,Y.CHEN,N.NASSAR,N.CARPINO JRNL TITL A PHOSPHATASE ACTIVITY OF STS-1 CONTRIBUTES TO THE JRNL TITL 2 SUPPRESSION OF TCR SIGNALING JRNL REF MOL.CELL V. 27 486 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17679096 JRNL DOI 10.1016/J.MOLCEL.2007.06.015 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 24371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6103 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.21000 REMARK 3 B22 (A**2) : 8.82000 REMARK 3 B33 (A**2) : -5.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.335 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.002 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6269 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8518 ; 1.420 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 773 ; 6.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;37.681 ;23.663 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1051 ;19.431 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;20.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 939 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4743 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2739 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4281 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 220 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 130 ; 0.367 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.430 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3962 ; 0.707 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6282 ; 1.294 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2626 ; 1.494 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2236 ; 2.312 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B M REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 373 A 490 1 REMARK 3 1 B 373 B 490 1 REMARK 3 1 M 373 M 490 1 REMARK 3 2 A 499 A 603 1 REMARK 3 2 B 499 B 603 1 REMARK 3 2 M 499 M 603 1 REMARK 3 3 A 611 A 626 1 REMARK 3 3 B 611 B 626 1 REMARK 3 3 M 611 M 626 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3627 ; 0.06 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 3627 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 M (A): 3627 ; 0.05 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3627 ; 0.12 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 3627 ; 0.09 ; 0.50 REMARK 3 TIGHT THERMAL 1 M (A**2): 3627 ; 0.07 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A M REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 604 A 610 1 REMARK 3 1 M 604 M 610 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 87 ; 0.02 ; 0.05 REMARK 3 TIGHT THERMAL 2 A (A**2): 87 ; 0.06 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 604 A 610 6 REMARK 3 1 B 604 B 610 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 3 A (A): 87 ; 0.37 ; 5.00 REMARK 3 LOOSE THERMAL 3 A (A**2): 87 ; 3.62 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25668 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.609 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.63000 REMARK 200 R SYM (I) : 0.63000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : 0.55600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1H0Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 8000, 0.1 M HEPES, 0.3 M NA REMARK 280 ACETATE, 0.2 M NA/K PHOSPHATE, PH 7.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.48000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.33550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.48000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.33550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SUBUNITS A AND B FORM A DIMER. REMARK 300 SUBUNIT C DIMERIZES WITH ITS SYMMETRY GENERATED BY THE 2-FOLD AXIS: REMARK 300 -X, Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 18.96043 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -99.48838 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 369 REMARK 465 PRO A 370 REMARK 465 GLN A 371 REMARK 465 THR A 634 REMARK 465 LEU A 635 REMARK 465 LEU A 636 REMARK 465 GLN A 637 REMARK 465 GLU A 638 REMARK 465 GLY B 369 REMARK 465 PRO B 370 REMARK 465 GLN B 371 REMARK 465 GLY B 628 REMARK 465 PHE B 629 REMARK 465 ASN B 630 REMARK 465 TRP B 631 REMARK 465 ARG B 632 REMARK 465 GLU B 633 REMARK 465 THR B 634 REMARK 465 LEU B 635 REMARK 465 LEU B 636 REMARK 465 GLN B 637 REMARK 465 GLU B 638 REMARK 465 GLY M 369 REMARK 465 PRO M 370 REMARK 465 GLN M 371 REMARK 465 LYS M 372 REMARK 465 TRP M 631 REMARK 465 ARG M 632 REMARK 465 GLU M 633 REMARK 465 THR M 634 REMARK 465 LEU M 635 REMARK 465 LEU M 636 REMARK 465 GLN M 637 REMARK 465 GLU M 638 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 633 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY B 578 OH TYR M 391 1565 1.90 REMARK 500 ND2 ASN A 540 CE1 PHE A 629 4545 1.96 REMARK 500 OH TYR B 391 ND2 ASN M 540 3555 2.05 REMARK 500 OG SER B 498 O GLY M 609 3555 2.15 REMARK 500 OG SER B 532 NZ LYS M 554 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 427 78.18 -155.33 REMARK 500 ALA A 511 -24.35 -38.58 REMARK 500 ASN A 558 -95.37 -75.36 REMARK 500 ALA A 564 -121.81 -145.15 REMARK 500 SER A 584 -0.80 -59.45 REMARK 500 LEU A 597 19.88 50.99 REMARK 500 ASP B 427 76.85 -155.54 REMARK 500 ALA B 511 -23.88 -39.48 REMARK 500 ASN B 558 -94.84 -75.14 REMARK 500 ALA B 564 -121.01 -146.92 REMARK 500 SER B 584 -0.86 -59.56 REMARK 500 LEU B 597 19.71 50.17 REMARK 500 ASP M 427 76.79 -155.84 REMARK 500 ALA M 511 -24.00 -39.83 REMARK 500 ASN M 558 -95.81 -76.17 REMARK 500 ALA M 564 -122.37 -146.28 REMARK 500 SER M 584 -0.11 -59.69 REMARK 500 LEU M 597 19.12 51.30 REMARK 500 PHE M 629 -69.29 -143.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 M 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H0Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MOUSE APO-STS-1 PGM DOMAIN DBREF 2IKQ A 369 638 UNP Q8BGG7 STS1_MOUSE 369 638 DBREF 2IKQ B 369 638 UNP Q8BGG7 STS1_MOUSE 369 638 DBREF 2IKQ M 369 638 UNP Q8BGG7 STS1_MOUSE 369 638 SEQRES 1 A 270 GLY PRO GLN LYS ARG CYS LEU PHE VAL CYS ARG HIS GLY SEQRES 2 A 270 GLU ARG MET ASP VAL VAL PHE GLY LYS TYR TRP LEU SER SEQRES 3 A 270 GLN CYS PHE ASP ALA LYS GLY ARG TYR ILE ARG THR ASN SEQRES 4 A 270 LEU ASN MET PRO HIS SER LEU PRO GLN ARG SER GLY GLY SEQRES 5 A 270 PHE ARG ASP TYR GLU LYS ASP ALA PRO ILE THR VAL PHE SEQRES 6 A 270 GLY CYS MET GLN ALA ARG LEU VAL GLY GLU ALA LEU LEU SEQRES 7 A 270 GLU SER ASN THR VAL ILE ASP HIS VAL TYR CYS SER PRO SEQRES 8 A 270 SER LEU ARG CYS VAL GLN THR ALA HIS ASN ILE LEU LYS SEQRES 9 A 270 GLY LEU GLN GLN ASP ASN HIS LEU LYS ILE ARG VAL GLU SEQRES 10 A 270 PRO GLY LEU PHE GLU TRP THR LYS TRP VAL ALA GLY SER SEQRES 11 A 270 THR LEU PRO ALA TRP ILE PRO PRO SER GLU LEU ALA ALA SEQRES 12 A 270 ALA ASN LEU SER VAL ASP THR THR TYR ARG PRO HIS ILE SEQRES 13 A 270 PRO VAL SER LYS LEU ALA ILE SER GLU SER TYR ASP THR SEQRES 14 A 270 TYR ILE ASN ARG SER PHE GLN VAL THR LYS GLU ILE ILE SEQRES 15 A 270 SER GLU CYS LYS SER LYS GLY ASN ASN ILE LEU ILE VAL SEQRES 16 A 270 ALA HIS ALA SER SER LEU GLU ALA CYS THR CYS GLN LEU SEQRES 17 A 270 GLN GLY LEU SER PRO GLN ASN SER LYS ASP PHE VAL GLN SEQRES 18 A 270 MET VAL ARG LYS ILE PRO TYR LEU GLY PHE CYS SER CYS SEQRES 19 A 270 GLU GLU LEU GLY GLU THR GLY ILE TRP GLN LEU THR ASP SEQRES 20 A 270 PRO PRO ILE LEU PRO LEU THR HIS GLY PRO THR GLY GLY SEQRES 21 A 270 PHE ASN TRP ARG GLU THR LEU LEU GLN GLU SEQRES 1 B 270 GLY PRO GLN LYS ARG CYS LEU PHE VAL CYS ARG HIS GLY SEQRES 2 B 270 GLU ARG MET ASP VAL VAL PHE GLY LYS TYR TRP LEU SER SEQRES 3 B 270 GLN CYS PHE ASP ALA LYS GLY ARG TYR ILE ARG THR ASN SEQRES 4 B 270 LEU ASN MET PRO HIS SER LEU PRO GLN ARG SER GLY GLY SEQRES 5 B 270 PHE ARG ASP TYR GLU LYS ASP ALA PRO ILE THR VAL PHE SEQRES 6 B 270 GLY CYS MET GLN ALA ARG LEU VAL GLY GLU ALA LEU LEU SEQRES 7 B 270 GLU SER ASN THR VAL ILE ASP HIS VAL TYR CYS SER PRO SEQRES 8 B 270 SER LEU ARG CYS VAL GLN THR ALA HIS ASN ILE LEU LYS SEQRES 9 B 270 GLY LEU GLN GLN ASP ASN HIS LEU LYS ILE ARG VAL GLU SEQRES 10 B 270 PRO GLY LEU PHE GLU TRP THR LYS TRP VAL ALA GLY SER SEQRES 11 B 270 THR LEU PRO ALA TRP ILE PRO PRO SER GLU LEU ALA ALA SEQRES 12 B 270 ALA ASN LEU SER VAL ASP THR THR TYR ARG PRO HIS ILE SEQRES 13 B 270 PRO VAL SER LYS LEU ALA ILE SER GLU SER TYR ASP THR SEQRES 14 B 270 TYR ILE ASN ARG SER PHE GLN VAL THR LYS GLU ILE ILE SEQRES 15 B 270 SER GLU CYS LYS SER LYS GLY ASN ASN ILE LEU ILE VAL SEQRES 16 B 270 ALA HIS ALA SER SER LEU GLU ALA CYS THR CYS GLN LEU SEQRES 17 B 270 GLN GLY LEU SER PRO GLN ASN SER LYS ASP PHE VAL GLN SEQRES 18 B 270 MET VAL ARG LYS ILE PRO TYR LEU GLY PHE CYS SER CYS SEQRES 19 B 270 GLU GLU LEU GLY GLU THR GLY ILE TRP GLN LEU THR ASP SEQRES 20 B 270 PRO PRO ILE LEU PRO LEU THR HIS GLY PRO THR GLY GLY SEQRES 21 B 270 PHE ASN TRP ARG GLU THR LEU LEU GLN GLU SEQRES 1 M 270 GLY PRO GLN LYS ARG CYS LEU PHE VAL CYS ARG HIS GLY SEQRES 2 M 270 GLU ARG MET ASP VAL VAL PHE GLY LYS TYR TRP LEU SER SEQRES 3 M 270 GLN CYS PHE ASP ALA LYS GLY ARG TYR ILE ARG THR ASN SEQRES 4 M 270 LEU ASN MET PRO HIS SER LEU PRO GLN ARG SER GLY GLY SEQRES 5 M 270 PHE ARG ASP TYR GLU LYS ASP ALA PRO ILE THR VAL PHE SEQRES 6 M 270 GLY CYS MET GLN ALA ARG LEU VAL GLY GLU ALA LEU LEU SEQRES 7 M 270 GLU SER ASN THR VAL ILE ASP HIS VAL TYR CYS SER PRO SEQRES 8 M 270 SER LEU ARG CYS VAL GLN THR ALA HIS ASN ILE LEU LYS SEQRES 9 M 270 GLY LEU GLN GLN ASP ASN HIS LEU LYS ILE ARG VAL GLU SEQRES 10 M 270 PRO GLY LEU PHE GLU TRP THR LYS TRP VAL ALA GLY SER SEQRES 11 M 270 THR LEU PRO ALA TRP ILE PRO PRO SER GLU LEU ALA ALA SEQRES 12 M 270 ALA ASN LEU SER VAL ASP THR THR TYR ARG PRO HIS ILE SEQRES 13 M 270 PRO VAL SER LYS LEU ALA ILE SER GLU SER TYR ASP THR SEQRES 14 M 270 TYR ILE ASN ARG SER PHE GLN VAL THR LYS GLU ILE ILE SEQRES 15 M 270 SER GLU CYS LYS SER LYS GLY ASN ASN ILE LEU ILE VAL SEQRES 16 M 270 ALA HIS ALA SER SER LEU GLU ALA CYS THR CYS GLN LEU SEQRES 17 M 270 GLN GLY LEU SER PRO GLN ASN SER LYS ASP PHE VAL GLN SEQRES 18 M 270 MET VAL ARG LYS ILE PRO TYR LEU GLY PHE CYS SER CYS SEQRES 19 M 270 GLU GLU LEU GLY GLU THR GLY ILE TRP GLN LEU THR ASP SEQRES 20 M 270 PRO PRO ILE LEU PRO LEU THR HIS GLY PRO THR GLY GLY SEQRES 21 M 270 PHE ASN TRP ARG GLU THR LEU LEU GLN GLU HET PO4 A 101 5 HET PO4 B 102 5 HET PO4 M 103 5 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 HOH *10(H2 O) HELIX 1 1 ARG A 383 PHE A 388 1 6 HELIX 2 2 TYR A 391 PHE A 397 1 7 HELIX 3 3 GLY A 420 ASP A 427 5 8 HELIX 4 4 THR A 431 SER A 448 1 18 HELIX 5 5 SER A 460 LEU A 474 1 15 HELIX 6 6 PRO A 486 PHE A 489 5 4 HELIX 7 7 TRP A 491 VAL A 495 5 5 HELIX 8 8 PRO A 505 ALA A 511 1 7 HELIX 9 9 PRO A 525 LEU A 529 5 5 HELIX 10 10 SER A 534 CYS A 553 1 20 HELIX 11 11 HIS A 565 CYS A 574 1 10 HELIX 12 12 GLN A 575 GLY A 578 5 4 HELIX 13 13 ASN A 583 ARG A 592 1 10 HELIX 14 14 ARG B 383 PHE B 388 1 6 HELIX 15 15 TYR B 391 PHE B 397 1 7 HELIX 16 16 GLY B 420 ASP B 427 5 8 HELIX 17 17 THR B 431 SER B 448 1 18 HELIX 18 18 SER B 460 LEU B 474 1 15 HELIX 19 19 PRO B 486 PHE B 489 5 4 HELIX 20 20 TRP B 491 VAL B 495 5 5 HELIX 21 21 PRO B 505 ALA B 511 1 7 HELIX 22 22 PRO B 525 LEU B 529 5 5 HELIX 23 23 SER B 534 CYS B 553 1 20 HELIX 24 24 HIS B 565 CYS B 574 1 10 HELIX 25 25 GLN B 575 GLY B 578 5 4 HELIX 26 26 ASN B 583 ARG B 592 1 10 HELIX 27 27 ARG M 383 PHE M 388 1 6 HELIX 28 28 TYR M 391 PHE M 397 1 7 HELIX 29 29 GLY M 420 ASP M 427 5 8 HELIX 30 30 THR M 431 SER M 448 1 18 HELIX 31 31 SER M 460 LEU M 474 1 15 HELIX 32 32 PRO M 486 PHE M 489 5 4 HELIX 33 33 TRP M 491 VAL M 495 5 5 HELIX 34 34 PRO M 505 ALA M 511 1 7 HELIX 35 35 PRO M 525 LEU M 529 5 5 HELIX 36 36 SER M 534 CYS M 553 1 20 HELIX 37 37 HIS M 565 CYS M 574 1 10 HELIX 38 38 GLN M 575 GLY M 578 5 4 HELIX 39 39 ASN M 583 ARG M 592 1 10 SHEET 1 A 6 ARG A 483 VAL A 484 0 SHEET 2 A 6 HIS A 454 CYS A 457 1 N VAL A 455 O ARG A 483 SHEET 3 A 6 ILE A 560 ALA A 564 1 O LEU A 561 N TYR A 456 SHEET 4 A 6 CYS A 374 ARG A 379 1 N CYS A 374 O ILE A 560 SHEET 5 A 6 PHE A 599 LEU A 605 -1 O CYS A 602 N LEU A 375 SHEET 6 A 6 ILE A 610 THR A 614 -1 O GLN A 612 N GLU A 603 SHEET 1 B 6 ARG B 483 VAL B 484 0 SHEET 2 B 6 HIS B 454 CYS B 457 1 N VAL B 455 O ARG B 483 SHEET 3 B 6 ILE B 560 ALA B 564 1 O LEU B 561 N TYR B 456 SHEET 4 B 6 CYS B 374 ARG B 379 1 N CYS B 374 O ILE B 560 SHEET 5 B 6 PHE B 599 LEU B 605 -1 O CYS B 602 N LEU B 375 SHEET 6 B 6 ILE B 610 THR B 614 -1 O GLN B 612 N GLU B 603 SHEET 1 C 6 ARG M 483 VAL M 484 0 SHEET 2 C 6 HIS M 454 CYS M 457 1 N VAL M 455 O ARG M 483 SHEET 3 C 6 ILE M 560 ALA M 564 1 O LEU M 561 N TYR M 456 SHEET 4 C 6 CYS M 374 ARG M 379 1 N CYS M 374 O ILE M 560 SHEET 5 C 6 PHE M 599 LEU M 605 -1 O CYS M 602 N LEU M 375 SHEET 6 C 6 ILE M 610 THR M 614 -1 O GLN M 612 N GLU M 603 SITE 1 AC1 7 ARG A 379 HIS A 380 ARG A 383 ARG A 462 SITE 2 AC1 7 GLU A 490 HIS A 565 ALA A 566 SITE 1 AC2 7 ARG B 379 HIS B 380 ARG B 383 ARG B 462 SITE 2 AC2 7 GLU B 490 HIS B 565 ALA B 566 SITE 1 AC3 8 HOH M 10 ARG M 379 HIS M 380 ARG M 383 SITE 2 AC3 8 ARG M 462 GLU M 490 HIS M 565 ALA M 566 CRYST1 116.960 74.671 101.279 90.00 100.79 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008550 0.000000 0.001629 0.00000 SCALE2 0.000000 0.013392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010051 0.00000