PDB Short entry for 2IRF HEADER GENE REGULATION/DNA 30-MAY-99 2IRF TITLE CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3'); COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'); COMPND 7 CHAIN: D, E, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERFERON REGULATORY FACTOR 2; COMPND 11 CHAIN: G, H, I, J, K, L; COMPND 12 FRAGMENT: DNA-BINDING DOMAIN; COMPND 13 SYNONYM: IRF-2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: T7 KEYWDS TRANSCRIPTION FACTOR, IFN INDUCTION, IRF FAMILY, GENE REGULATION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.FUJII,T.SHIMIZU,M.KUSUMOTO,Y.KYOGOKU,T.TANIGUCHI,T.HAKOSHIMA REVDAT 5 27-DEC-23 2IRF 1 REMARK LINK REVDAT 4 24-FEB-09 2IRF 1 VERSN REVDAT 3 25-SEP-00 2IRF 1 JRNL REVDAT 2 20-JUN-00 2IRF 1 REMARK DBREF JRNL REVDAT 1 08-OCT-99 2IRF 0 JRNL AUTH Y.FUJII,T.SHIMIZU,M.KUSUMOTO,Y.KYOGOKU,T.TANIGUCHI, JRNL AUTH 2 T.HAKOSHIMA JRNL TITL CRYSTAL STRUCTURE OF AN IRF-DNA COMPLEX REVEALS NOVEL DNA JRNL TITL 2 RECOGNITION AND COOPERATIVE BINDING TO A TANDEM REPEAT OF JRNL TITL 3 CORE SEQUENCES. JRNL EDIT J.TOOZE JRNL REF EMBO J. V. 18 5028 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 10487755 JRNL DOI 10.1093/EMBOJ/18.18.5028 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 35660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 8 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5484 REMARK 3 NUCLEIC ACID ATOMS : 1510 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.600 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000001132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35660 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 35.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES-K (PH 5.8), 50 MM KCL, 4% 2 REMARK 280 -MPD,, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 197.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.83333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.25000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.41667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 247.08333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 197.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 98.83333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 49.41667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 148.25000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 247.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT E 1112 REMARK 465 MET G 1 REMARK 465 PRO G 2 REMARK 465 VAL G 3 REMARK 465 GLU G 4 REMARK 465 MET H 201 REMARK 465 PRO H 202 REMARK 465 VAL H 203 REMARK 465 GLU H 204 REMARK 465 MET I 401 REMARK 465 PRO I 402 REMARK 465 VAL I 403 REMARK 465 GLU I 404 REMARK 465 MET J 601 REMARK 465 PRO J 602 REMARK 465 VAL J 603 REMARK 465 GLU J 604 REMARK 465 MET K 801 REMARK 465 PRO K 802 REMARK 465 VAL K 803 REMARK 465 GLU K 804 REMARK 465 MET L 2001 REMARK 465 PRO L 2002 REMARK 465 VAL L 2003 REMARK 465 GLU L 2004 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG G 5 CG CD NE CZ NH1 NH2 REMARK 470 ARG I 405 CG CD NE CZ NH1 NH2 REMARK 470 ARG L2005 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS G 100 22.40 -79.65 REMARK 500 ILE H 299 87.89 -65.10 REMARK 500 LYS I 500 7.29 -69.47 REMARK 500 ASN J 628 88.69 -171.25 REMARK 500 ASP J 696 -58.52 179.61 REMARK 500 ARG J 697 -50.75 -148.24 REMARK 500 SER J 698 -10.21 61.78 REMARK 500 ASN J 703 -88.13 -55.79 REMARK 500 ASN K 828 83.93 -161.81 REMARK 500 ASN K 904 57.98 -95.10 REMARK 500 ASN L2028 98.80 -161.82 REMARK 500 SER L2098 59.02 -107.73 REMARK 500 ASN L2104 51.90 -98.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT D1105 0.09 SIDE CHAIN REMARK 500 DT E1117 0.07 SIDE CHAIN REMARK 500 DT F1129 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K G4001 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET G 85 O REMARK 620 2 ASN G 86 O 76.7 REMARK 620 3 LEU G 88 O 97.8 94.0 REMARK 620 4 ILE G 91 O 98.4 170.2 78.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K H4006 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET H 285 O REMARK 620 2 ASN H 286 O 71.5 REMARK 620 3 LEU H 288 O 90.0 89.7 REMARK 620 4 ILE H 291 O 96.2 164.1 80.1 REMARK 620 5 HOH H3176 O 129.2 111.6 139.0 83.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K I4003 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET I 485 O REMARK 620 2 ASN I 486 O 73.6 REMARK 620 3 LEU I 488 O 94.9 91.0 REMARK 620 4 ILE I 491 O 96.4 169.7 87.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K J4005 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET J 685 O REMARK 620 2 ASN J 686 O 79.3 REMARK 620 3 LEU J 688 O 96.0 102.3 REMARK 620 4 ILE J 691 O 89.2 167.5 73.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K K4004 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET K 885 O REMARK 620 2 ASN K 886 O 73.9 REMARK 620 3 LEU K 888 O 96.4 85.7 REMARK 620 4 ILE K 891 O 109.6 163.8 78.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K L4002 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET L2085 O REMARK 620 2 ASN L2086 O 72.1 REMARK 620 3 LEU L2088 O 91.7 89.4 REMARK 620 4 ILE L2091 O 94.4 163.6 81.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K G 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K L 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K I 4003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K K 4004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K J 4005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K H 4006 DBREF 2IRF G 1 113 UNP P23906 IRF2_MOUSE 1 113 DBREF 2IRF H 201 313 UNP P23906 IRF2_MOUSE 1 113 DBREF 2IRF I 401 513 UNP P23906 IRF2_MOUSE 1 113 DBREF 2IRF J 601 713 UNP P23906 IRF2_MOUSE 1 113 DBREF 2IRF K 801 913 UNP P23906 IRF2_MOUSE 1 113 DBREF 2IRF L 2001 2113 UNP P23906 IRF2_MOUSE 1 113 DBREF 2IRF A 1001 1012 PDB 2IRF 2IRF 1001 1012 DBREF 2IRF B 1013 1024 PDB 2IRF 2IRF 1013 1024 DBREF 2IRF C 1025 1036 PDB 2IRF 2IRF 1025 1036 DBREF 2IRF D 1100 1112 PDB 2IRF 2IRF 1100 1112 DBREF 2IRF E 1112 1124 PDB 2IRF 2IRF 1112 1124 DBREF 2IRF F 1124 1136 PDB 2IRF 2IRF 1124 1136 SEQRES 1 A 12 DA DA DG DT DG DA DA DA DG 5IU DG DA SEQRES 1 B 12 DA DA DG DT DG DA DA DA DG 5IU DG DA SEQRES 1 C 12 DA DA DG DT DG DA DA DA DG 5IU DG DA SEQRES 1 D 13 DT DT DC DA DC DT DT DT DC DA DC 5IU DT SEQRES 1 E 13 DT DT DC DA DC DT DT DT DC DA DC 5IU DT SEQRES 1 F 13 DT DT DC DA DC DT DT DT DC DA DC 5IU DT SEQRES 1 G 113 MET PRO VAL GLU ARG MET ARG MET ARG PRO TRP LEU GLU SEQRES 2 G 113 GLU GLN ILE ASN SER ASN THR ILE PRO GLY LEU LYS TRP SEQRES 3 G 113 LEU ASN LYS GLU LYS LYS ILE PHE GLN ILE PRO TRP MET SEQRES 4 G 113 HIS ALA ALA ARG HIS GLY TRP ASP VAL GLU LYS ASP ALA SEQRES 5 G 113 PRO LEU PHE ARG ASN TRP ALA ILE HIS THR GLY LYS HIS SEQRES 6 G 113 GLN PRO GLY ILE ASP LYS PRO ASP PRO LYS THR TRP LYS SEQRES 7 G 113 ALA ASN PHE ARG CYS ALA MET ASN SER LEU PRO ASP ILE SEQRES 8 G 113 GLU GLU VAL LYS ASP ARG SER ILE LYS LYS GLY ASN ASN SEQRES 9 G 113 ALA PHE ARG VAL TYR ARG MET LEU PRO SEQRES 1 H 113 MET PRO VAL GLU ARG MET ARG MET ARG PRO TRP LEU GLU SEQRES 2 H 113 GLU GLN ILE ASN SER ASN THR ILE PRO GLY LEU LYS TRP SEQRES 3 H 113 LEU ASN LYS GLU LYS LYS ILE PHE GLN ILE PRO TRP MET SEQRES 4 H 113 HIS ALA ALA ARG HIS GLY TRP ASP VAL GLU LYS ASP ALA SEQRES 5 H 113 PRO LEU PHE ARG ASN TRP ALA ILE HIS THR GLY LYS HIS SEQRES 6 H 113 GLN PRO GLY ILE ASP LYS PRO ASP PRO LYS THR TRP LYS SEQRES 7 H 113 ALA ASN PHE ARG CYS ALA MET ASN SER LEU PRO ASP ILE SEQRES 8 H 113 GLU GLU VAL LYS ASP ARG SER ILE LYS LYS GLY ASN ASN SEQRES 9 H 113 ALA PHE ARG VAL TYR ARG MET LEU PRO SEQRES 1 I 113 MET PRO VAL GLU ARG MET ARG MET ARG PRO TRP LEU GLU SEQRES 2 I 113 GLU GLN ILE ASN SER ASN THR ILE PRO GLY LEU LYS TRP SEQRES 3 I 113 LEU ASN LYS GLU LYS LYS ILE PHE GLN ILE PRO TRP MET SEQRES 4 I 113 HIS ALA ALA ARG HIS GLY TRP ASP VAL GLU LYS ASP ALA SEQRES 5 I 113 PRO LEU PHE ARG ASN TRP ALA ILE HIS THR GLY LYS HIS SEQRES 6 I 113 GLN PRO GLY ILE ASP LYS PRO ASP PRO LYS THR TRP LYS SEQRES 7 I 113 ALA ASN PHE ARG CYS ALA MET ASN SER LEU PRO ASP ILE SEQRES 8 I 113 GLU GLU VAL LYS ASP ARG SER ILE LYS LYS GLY ASN ASN SEQRES 9 I 113 ALA PHE ARG VAL TYR ARG MET LEU PRO SEQRES 1 J 113 MET PRO VAL GLU ARG MET ARG MET ARG PRO TRP LEU GLU SEQRES 2 J 113 GLU GLN ILE ASN SER ASN THR ILE PRO GLY LEU LYS TRP SEQRES 3 J 113 LEU ASN LYS GLU LYS LYS ILE PHE GLN ILE PRO TRP MET SEQRES 4 J 113 HIS ALA ALA ARG HIS GLY TRP ASP VAL GLU LYS ASP ALA SEQRES 5 J 113 PRO LEU PHE ARG ASN TRP ALA ILE HIS THR GLY LYS HIS SEQRES 6 J 113 GLN PRO GLY ILE ASP LYS PRO ASP PRO LYS THR TRP LYS SEQRES 7 J 113 ALA ASN PHE ARG CYS ALA MET ASN SER LEU PRO ASP ILE SEQRES 8 J 113 GLU GLU VAL LYS ASP ARG SER ILE LYS LYS GLY ASN ASN SEQRES 9 J 113 ALA PHE ARG VAL TYR ARG MET LEU PRO SEQRES 1 K 113 MET PRO VAL GLU ARG MET ARG MET ARG PRO TRP LEU GLU SEQRES 2 K 113 GLU GLN ILE ASN SER ASN THR ILE PRO GLY LEU LYS TRP SEQRES 3 K 113 LEU ASN LYS GLU LYS LYS ILE PHE GLN ILE PRO TRP MET SEQRES 4 K 113 HIS ALA ALA ARG HIS GLY TRP ASP VAL GLU LYS ASP ALA SEQRES 5 K 113 PRO LEU PHE ARG ASN TRP ALA ILE HIS THR GLY LYS HIS SEQRES 6 K 113 GLN PRO GLY ILE ASP LYS PRO ASP PRO LYS THR TRP LYS SEQRES 7 K 113 ALA ASN PHE ARG CYS ALA MET ASN SER LEU PRO ASP ILE SEQRES 8 K 113 GLU GLU VAL LYS ASP ARG SER ILE LYS LYS GLY ASN ASN SEQRES 9 K 113 ALA PHE ARG VAL TYR ARG MET LEU PRO SEQRES 1 L 113 MET PRO VAL GLU ARG MET ARG MET ARG PRO TRP LEU GLU SEQRES 2 L 113 GLU GLN ILE ASN SER ASN THR ILE PRO GLY LEU LYS TRP SEQRES 3 L 113 LEU ASN LYS GLU LYS LYS ILE PHE GLN ILE PRO TRP MET SEQRES 4 L 113 HIS ALA ALA ARG HIS GLY TRP ASP VAL GLU LYS ASP ALA SEQRES 5 L 113 PRO LEU PHE ARG ASN TRP ALA ILE HIS THR GLY LYS HIS SEQRES 6 L 113 GLN PRO GLY ILE ASP LYS PRO ASP PRO LYS THR TRP LYS SEQRES 7 L 113 ALA ASN PHE ARG CYS ALA MET ASN SER LEU PRO ASP ILE SEQRES 8 L 113 GLU GLU VAL LYS ASP ARG SER ILE LYS LYS GLY ASN ASN SEQRES 9 L 113 ALA PHE ARG VAL TYR ARG MET LEU PRO MODRES 2IRF 5IU A 1010 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 2IRF 5IU B 1022 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 2IRF 5IU C 1034 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 2IRF 5IU D 1111 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 2IRF 5IU E 1123 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 2IRF 5IU F 1135 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HET 5IU A1010 20 HET 5IU B1022 20 HET 5IU C1034 20 HET 5IU D1111 20 HET 5IU E1123 20 HET 5IU F1135 20 HET K G4001 1 HET K H4006 1 HET K I4003 1 HET K J4005 1 HET K K4004 1 HET K L4002 1 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM K POTASSIUM ION FORMUL 1 5IU 6(C9 H12 I N2 O8 P) FORMUL 13 K 6(K 1+) FORMUL 19 HOH *397(H2 O) HELIX 1 1 ARG G 7 SER G 18 1 12 HELIX 2 2 ASP G 47 ALA G 52 1 6 HELIX 3 3 ALA G 52 THR G 62 1 11 HELIX 4 4 ASP G 73 LEU G 88 1 16 HELIX 5 5 ARG H 207 ASN H 219 1 13 HELIX 6 6 ASP H 247 ALA H 252 1 6 HELIX 7 7 ALA H 252 THR H 262 1 11 HELIX 8 8 ASP H 273 LEU H 288 1 16 HELIX 9 9 ARG I 407 ASN I 419 1 13 HELIX 10 10 ASP I 447 ALA I 452 1 6 HELIX 11 11 ALA I 452 THR I 462 1 11 HELIX 12 12 ASP I 473 LEU I 488 1 16 HELIX 13 13 ARG J 607 SER J 618 1 12 HELIX 14 14 ASP J 647 ALA J 652 1 6 HELIX 15 15 ALA J 652 THR J 662 1 11 HELIX 16 16 ASP J 673 LEU J 688 1 16 HELIX 17 17 ARG K 807 SER K 818 1 12 HELIX 18 18 ASP K 847 ALA K 852 1 6 HELIX 19 19 ALA K 852 THR K 862 1 11 HELIX 20 20 ASP K 873 LEU K 888 1 16 HELIX 21 21 ARG L 2007 ASN L 2019 1 13 HELIX 22 22 ASP L 2047 ALA L 2052 1 6 HELIX 23 23 ALA L 2052 THR L 2062 1 11 HELIX 24 24 ASP L 2073 LEU L 2088 1 16 SHEET 1 1S1 1 LYS G 25 ASN G 28 0 SHEET 1 2S1 1 LYS H 225 ASN H 228 0 SHEET 1 3S1 1 LYS I 425 ASN I 428 0 SHEET 1 4S1 1 LYS J 625 ASN J 628 0 SHEET 1 5S1 1 LYS K 825 ASN K 828 0 SHEET 1 6S1 1 LYS L2025 ASN L2028 0 SHEET 1 1S2 1 ILE G 33 PRO G 37 0 SHEET 1 2S2 1 ILE H 233 PRO H 237 0 SHEET 1 3S2 1 ILE I 433 PRO I 437 0 SHEET 1 4S2 1 ILE J 633 PRO J 637 0 SHEET 1 5S2 1 ILE K 833 PRO K 837 0 SHEET 1 6S2 1 ILE L2033 PRO L2037 0 SHEET 1 1S3 1 ILE G 91 VAL G 94 0 SHEET 1 2S3 1 ILE H 291 VAL H 294 0 SHEET 1 3S3 1 ILE I 491 VAL I 494 0 SHEET 1 4S3 1 ILE J 691 VAL J 694 0 SHEET 1 5S3 1 ILE K 891 VAL K 894 0 SHEET 1 6S3 1 ILE L2091 VAL L2094 0 SHEET 1 1S4 1 PHE G 106 MET G 111 0 SHEET 1 2S4 1 PHE H 306 MET H 311 0 SHEET 1 3S4 1 PHE I 506 MET I 511 0 SHEET 1 4S4 1 PHE J 706 MET J 711 0 SHEET 1 5S4 1 PHE K 906 MET K 911 0 SHEET 1 6S4 1 PHE L2106 MET L2111 0 LINK O3' DG A1009 P 5IU A1010 1555 1555 1.60 LINK O3' 5IU A1010 P DG A1011 1555 1555 1.60 LINK O3' DG B1021 P 5IU B1022 1555 1555 1.60 LINK O3' 5IU B1022 P DG B1023 1555 1555 1.60 LINK O3' DG C1033 P 5IU C1034 1555 1555 1.60 LINK O3' 5IU C1034 P DG C1035 1555 1555 1.60 LINK O3' DC D1110 P 5IU D1111 1555 1555 1.59 LINK O3' 5IU D1111 P DT D1112 1555 1555 1.60 LINK O3' DC E1122 P 5IU E1123 1555 1555 1.60 LINK O3' 5IU E1123 P DT E1124 1555 1555 1.60 LINK O3' DC F1134 P 5IU F1135 1555 1555 1.59 LINK O3' 5IU F1135 P DT F1136 1555 1555 1.60 LINK O MET G 85 K K G4001 1555 1555 2.82 LINK O ASN G 86 K K G4001 1555 1555 2.80 LINK O LEU G 88 K K G4001 1555 1555 2.71 LINK O ILE G 91 K K G4001 1555 1555 2.66 LINK O MET H 285 K K H4006 1555 1555 2.83 LINK O ASN H 286 K K H4006 1555 1555 3.28 LINK O LEU H 288 K K H4006 1555 1555 2.88 LINK O ILE H 291 K K H4006 1555 1555 2.71 LINK O HOH H3176 K K H4006 1555 1555 3.64 LINK O MET I 485 K K I4003 1555 1555 2.83 LINK O ASN I 486 K K I4003 1555 1555 2.91 LINK O LEU I 488 K K I4003 1555 1555 2.70 LINK O ILE I 491 K K I4003 1555 1555 2.65 LINK O MET J 685 K K J4005 1555 1555 2.79 LINK O ASN J 686 K K J4005 1555 1555 2.89 LINK O LEU J 688 K K J4005 1555 1555 2.73 LINK O ILE J 691 K K J4005 1555 1555 2.74 LINK O MET K 885 K K K4004 1555 1555 2.78 LINK O ASN K 886 K K K4004 1555 1555 3.06 LINK O LEU K 888 K K K4004 1555 1555 2.71 LINK O ILE K 891 K K K4004 1555 1555 2.67 LINK O MET L2085 K K L4002 1555 1555 2.81 LINK O ASN L2086 K K L4002 1555 1555 3.11 LINK O LEU L2088 K K L4002 1555 1555 2.72 LINK O ILE L2091 K K L4002 1555 1555 2.76 CISPEP 1 LEU I 512 PRO I 513 0 -0.11 SITE 1 AC1 4 MET G 85 ASN G 86 LEU G 88 ILE G 91 SITE 1 AC2 4 MET L2085 ASN L2086 LEU L2088 ILE L2091 SITE 1 AC3 4 MET I 485 ASN I 486 LEU I 488 ILE I 491 SITE 1 AC4 4 MET K 885 ASN K 886 LEU K 888 ILE K 891 SITE 1 AC5 4 MET J 685 ASN J 686 LEU J 688 ILE J 691 SITE 1 AC6 4 MET H 285 ASN H 286 LEU H 288 ILE H 291 CRYST1 132.300 132.300 296.500 90.00 90.00 120.00 P 65 2 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007558 0.004364 0.000000 0.00000 SCALE2 0.000000 0.008728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003373 0.00000