PDB Short entry for 2IRV HEADER MEMBRANE PROTEIN 16-OCT-06 2IRV TITLE CRYSTAL STRUCTURE OF GLPG, A RHOMBOID INTRAMEMBRANE SERINE PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN GLPG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEASE CORE, RESIDUES 92-273; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GLPG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS MEMBRANE PROTEIN, CAVITY, SER-HIS DYAD EXPDTA X-RAY DIFFRACTION AUTHOR E.BIBI,D.FASS,A.BEN-SHEM REVDAT 6 21-FEB-24 2IRV 1 REMARK HETSYN REVDAT 5 13-JUL-11 2IRV 1 VERSN REVDAT 4 24-FEB-09 2IRV 1 VERSN REVDAT 3 23-JAN-07 2IRV 1 JRNL REVDAT 2 09-JAN-07 2IRV 1 JRNL REVDAT 1 31-OCT-06 2IRV 0 JRNL AUTH A.BEN-SHEM,D.FASS,E.BIBI JRNL TITL STRUCTURAL BASIS FOR INTRAMEMBRANE PROTEOLYSIS BY RHOMBOID JRNL TITL 2 SERINE PROTEASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 462 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17190827 JRNL DOI 10.1073/PNAS.0609773104 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2825 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 290 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.301 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 30% PEG 400, 200 MM CACL2 REMARK 280 IN RESERVOIR, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.67500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 244 REMARK 465 PHE A 245 REMARK 465 GLY A 246 REMARK 465 MET A 247 REMARK 465 SER A 248 REMARK 465 MET A 249 REMARK 465 ARG B 92 REMARK 465 ALA B 272 REMARK 465 ARG B 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 251 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 19 O HOH B 47 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 126 118.18 -39.87 REMARK 500 PRO A 129 -31.42 -35.61 REMARK 500 PHE A 139 -36.27 -131.38 REMARK 500 PHE A 242 -108.25 -122.12 REMARK 500 ASN A 251 77.24 -152.16 REMARK 500 ALA A 272 158.90 -48.02 REMARK 500 SER B 201 -109.90 45.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LDA A 3842 REMARK 610 LDA A 3845 REMARK 610 LDA A 3850 REMARK 610 LDA B 3837 REMARK 610 LDA B 3838 REMARK 610 LDA B 3839 REMARK 610 LDA B 3840 REMARK 610 LDA B 3841 REMARK 610 LDA B 3843 REMARK 610 LDA B 3844 REMARK 610 LDA B 3846 REMARK 610 LDA B 3847 REMARK 610 LDA B 3848 REMARK 610 PGV B 5136 REMARK 610 PGV B 5137 REMARK 610 PGV B 5138 REMARK 610 PGV B 5139 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 5156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3834 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3835 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3836 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3837 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3838 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3839 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3840 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3841 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 3842 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3843 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3844 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 3845 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 3847 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 3850 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT B 3888 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGV B 5136 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGV B 5138 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGV B 5139 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IC8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLPG DBREF 2IRV A 92 273 UNP P09391 GLPG_ECOLI 92 273 DBREF 2IRV B 92 273 UNP P09391 GLPG_ECOLI 92 273 SEQRES 1 A 182 ARG ALA GLY PRO VAL THR TRP VAL MET MET ILE ALA CYS SEQRES 2 A 182 VAL VAL VAL PHE ILE ALA MET GLN ILE LEU GLY ASP GLN SEQRES 3 A 182 GLU VAL MET LEU TRP LEU ALA TRP PRO PHE ASP PRO THR SEQRES 4 A 182 LEU LYS PHE GLU PHE TRP ARG TYR PHE THR HIS ALA LEU SEQRES 5 A 182 MET HIS PHE SER LEU MET HIS ILE LEU PHE ASN LEU LEU SEQRES 6 A 182 TRP TRP TRP TYR LEU GLY GLY ALA VAL GLU LYS ARG LEU SEQRES 7 A 182 GLY SER GLY LYS LEU ILE VAL ILE THR LEU ILE SER ALA SEQRES 8 A 182 LEU LEU SER GLY TYR VAL GLN GLN LYS PHE SER GLY PRO SEQRES 9 A 182 TRP PHE GLY GLY LEU SER GLY VAL VAL TYR ALA LEU MET SEQRES 10 A 182 GLY TYR VAL TRP LEU ARG GLY GLU ARG ASP PRO GLN SER SEQRES 11 A 182 GLY ILE TYR LEU GLN ARG GLY LEU ILE ILE PHE ALA LEU SEQRES 12 A 182 ILE TRP ILE VAL ALA GLY TRP PHE ASP LEU PHE GLY MET SEQRES 13 A 182 SER MET ALA ASN GLY ALA HIS ILE ALA GLY LEU ALA VAL SEQRES 14 A 182 GLY LEU ALA MET ALA PHE VAL ASP SER LEU ASN ALA ARG SEQRES 1 B 182 ARG ALA GLY PRO VAL THR TRP VAL MET MET ILE ALA CYS SEQRES 2 B 182 VAL VAL VAL PHE ILE ALA MET GLN ILE LEU GLY ASP GLN SEQRES 3 B 182 GLU VAL MET LEU TRP LEU ALA TRP PRO PHE ASP PRO THR SEQRES 4 B 182 LEU LYS PHE GLU PHE TRP ARG TYR PHE THR HIS ALA LEU SEQRES 5 B 182 MET HIS PHE SER LEU MET HIS ILE LEU PHE ASN LEU LEU SEQRES 6 B 182 TRP TRP TRP TYR LEU GLY GLY ALA VAL GLU LYS ARG LEU SEQRES 7 B 182 GLY SER GLY LYS LEU ILE VAL ILE THR LEU ILE SER ALA SEQRES 8 B 182 LEU LEU SER GLY TYR VAL GLN GLN LYS PHE SER GLY PRO SEQRES 9 B 182 TRP PHE GLY GLY LEU SER GLY VAL VAL TYR ALA LEU MET SEQRES 10 B 182 GLY TYR VAL TRP LEU ARG GLY GLU ARG ASP PRO GLN SER SEQRES 11 B 182 GLY ILE TYR LEU GLN ARG GLY LEU ILE ILE PHE ALA LEU SEQRES 12 B 182 ILE TRP ILE VAL ALA GLY TRP PHE ASP LEU PHE GLY MET SEQRES 13 B 182 SER MET ALA ASN GLY ALA HIS ILE ALA GLY LEU ALA VAL SEQRES 14 B 182 GLY LEU ALA MET ALA PHE VAL ASP SER LEU ASN ALA ARG HET LDA A3842 10 HET LDA A3845 13 HET LDA A3850 14 HET PO4 B5156 5 HET LDA B3834 16 HET LDA B3835 16 HET LDA B3836 16 HET LDA B3837 13 HET LDA B3838 12 HET LDA B3839 9 HET LDA B3840 10 HET LDA B3841 11 HET LDA B3843 13 HET LDA B3844 14 HET LDA B3846 11 HET LDA B3847 10 HET LDA B3848 13 HET LMT B3888 35 HET PGV B5136 26 HET PGV B5137 8 HET PGV B5138 8 HET PGV B5139 7 HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM PO4 PHOSPHATE ION HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM PGV (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 PGV PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)- HETNAM 3 PGV OCTADEC-11-ENOATE HETSYN PGV PHOSPHATIDYLGLYCEROL; 2-VACCENOYL-1-PALMITOYL-SN- HETSYN 2 PGV GLYCEROL-3-PHOSPHOGLYCEROL FORMUL 3 LDA 16(C14 H31 N O) FORMUL 6 PO4 O4 P 3- FORMUL 20 LMT C24 H46 O11 FORMUL 21 PGV 4(C40 H77 O10 P) FORMUL 25 HOH *81(H2 O) HELIX 1 1 GLY A 94 GLY A 115 1 22 HELIX 2 2 GLY A 115 ALA A 124 1 10 HELIX 3 3 ASP A 128 LYS A 132 5 5 HELIX 4 4 TRP A 136 HIS A 141 1 6 HELIX 5 5 ALA A 142 MET A 144 5 3 HELIX 6 6 SER A 147 GLY A 170 1 24 HELIX 7 7 GLY A 170 GLY A 194 1 25 HELIX 8 8 LEU A 200 ASP A 218 1 19 HELIX 9 9 PRO A 219 GLY A 222 5 4 HELIX 10 10 GLY A 228 TRP A 241 1 14 HELIX 11 11 GLY A 252 SER A 269 1 18 HELIX 12 12 GLY B 94 GLY B 115 1 22 HELIX 13 13 GLY B 115 ALA B 124 1 10 HELIX 14 14 ASP B 128 LYS B 132 5 5 HELIX 15 15 TRP B 136 HIS B 141 1 6 HELIX 16 16 ALA B 142 MET B 144 5 3 HELIX 17 17 SER B 147 GLY B 194 1 48 HELIX 18 18 SER B 201 ASP B 218 1 18 HELIX 19 19 PRO B 219 GLY B 222 5 4 HELIX 20 20 ILE B 230 PHE B 242 1 13 HELIX 21 21 ASP B 243 MET B 247 5 5 HELIX 22 22 ALA B 250 SER B 269 1 20 SITE 1 AC1 6 HOH B 14 TRP B 212 ARG B 227 GLY B 228 SITE 2 AC1 6 ILE B 230 LDA B3847 SITE 1 AC2 5 LDA A3842 HOH B 69 VAL B 106 ILE B 113 SITE 2 AC2 5 LEU B 114 SITE 1 AC3 4 VAL A 106 TRP B 98 ILE B 102 LDA B3836 SITE 1 AC4 4 LDA A3845 PRO B 95 ILE B 102 LDA B3835 SITE 1 AC5 6 MET B 101 PHE B 108 LEU B 148 LEU B 155 SITE 2 AC5 6 LEU B 156 TRP B 159 SITE 1 AC6 2 VAL B 96 SER B 171 SITE 1 AC7 1 LDA A3845 SITE 1 AC8 2 TRP B 241 LMT B3888 SITE 1 AC9 3 HOH B 61 TRP B 241 PHE B 242 SITE 1 BC1 5 GLY A 94 PRO A 95 TRP A 98 VAL A 99 SITE 2 BC1 5 LDA B3834 SITE 1 BC2 1 LDA B3844 SITE 1 BC3 1 LDA B3843 SITE 1 BC4 2 LDA B3836 LDA B3839 SITE 1 BC5 5 PHE A 242 TRP B 212 ILE B 230 ILE B 231 SITE 2 BC5 5 PO4 B5156 SITE 1 BC6 2 TRP A 159 TYR A 160 SITE 1 BC7 11 HOH B 32 HOH B 47 HOH B 63 LEU B 184 SITE 2 BC7 11 PHE B 192 SER B 193 SER B 248 MET B 249 SITE 3 BC7 11 GLY B 252 ALA B 256 LDA B3840 SITE 1 BC8 11 HOH B 18 HOH B 78 HIS B 150 PHE B 153 SITE 2 BC8 11 ASN B 154 TRP B 157 SER B 201 TYR B 205 SITE 3 BC8 11 PHE B 232 TRP B 236 HIS B 254 SITE 1 BC9 2 LEU B 229 PHE B 232 SITE 1 CC1 1 TRP B 236 CRYST1 49.820 69.350 67.580 90.00 101.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020072 0.000000 0.003913 0.00000 SCALE2 0.000000 0.014420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015076 0.00000