PDB Short entry for 2IV8 HEADER ENDOCYTOSIS/REGULATOR 08-JUN-06 2IV8 TITLE BETA APPENDAGE IN COMPLEX WITH B-ARRESTIN PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-2 COMPLEX SUBUNIT BETA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 700-937; COMPND 5 SYNONYM: BETA2-APPENDAGE, ADAPTER-RELATED PROTEIN COMPLEX 2 BETA-1 COMPND 6 SUBUNIT, BETA-ADAPTIN, PLASMA MEMBRANE ADAPTOR HA2/AP2 ADAPTIN BETA COMPND 7 SUBUNIT, CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 BETA LARGE CHAIN, COMPND 8 AP105B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: BETA-ARRESTIN-1; COMPND 12 CHAIN: P, Q; COMPND 13 FRAGMENT: RESIDUES 383-402; COMPND 14 SYNONYM: B-ARRESTIN2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS-REGULATOR COMPLEX, SENSORY TRANSDUCTION, RECEPTOR, COATED KEYWDS 2 PITS, ADAPTOR COMPLEX-REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR M.G.J.FORD,E.M.SCHMID,H.T.MCMAHON REVDAT 4 13-DEC-23 2IV8 1 REMARK REVDAT 3 13-JUL-11 2IV8 1 VERSN REVDAT 2 24-FEB-09 2IV8 1 VERSN REVDAT 1 12-JUN-07 2IV8 0 JRNL AUTH E.M.SCHMID,M.G.J.FORD,A.BURTEY,G.J.K.PRAEFCKE,S.PEAK-CHEW, JRNL AUTH 2 I.G.MILLS,A.BENMERAH,H.T.MCMAHON JRNL TITL ROLE OF THE AP2 BETA-APPENDAGE HUB IN RECRUITING PARTNERS JRNL TITL 2 FOR CLATHRIN-COATED VESICLE ASSEMBLY. JRNL REF PLOS BIOL. V. 4 E262 2006 JRNL REFN ISSN 1544-9173 JRNL PMID 16903783 JRNL DOI 10.1371/JOURNAL.PBIO.0040262 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 70.8 REMARK 3 NUMBER OF REFLECTIONS : 4512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.369 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 6 REMARK 3 BIN FREE R VALUE : 0.5660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.788 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.455 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.781 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2058 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2797 ; 2.246 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 9.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;44.237 ;25.510 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;23.015 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1558 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1033 ; 0.305 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1376 ; 0.341 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 96 ; 0.267 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.349 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1301 ; 0.973 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2048 ; 1.691 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 873 ; 2.275 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 747 ; 3.748 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 828 A 905 REMARK 3 RESIDUE RANGE : A 906 A 937 REMARK 3 RESIDUE RANGE : P 1 P 14 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9825 -4.0530 -11.0880 REMARK 3 T TENSOR REMARK 3 T11: -0.0988 T22: 0.0486 REMARK 3 T33: -0.1143 T12: -0.0428 REMARK 3 T13: -0.0107 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 0.2184 L22: 0.0579 REMARK 3 L33: 6.0894 L12: -0.1097 REMARK 3 L13: -0.7835 L23: 0.4901 REMARK 3 S TENSOR REMARK 3 S11: -0.3225 S12: 0.0706 S13: 0.0376 REMARK 3 S21: 0.1401 S22: 0.0628 S23: -0.2298 REMARK 3 S31: 0.1961 S32: -0.3487 S33: 0.2597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1290029057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E42, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MG FORMATE 30% PEG 3350 OTHER REMARK 280 REMARKS: THIS WAS THE ONLY CRYSTAL OBTAINED DESPITE HEROIC REMARK 280 ATTEMPTS. THE CRYSTAL WAS HIGHLY MOSAIC, AND EPITAXIALLY SPLIT, REMARK 280 LIMITING THE AMOUNT OF DATA WHICH COULD BE COLLECTED., PH 7.40 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.47600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.31200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.74200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.31200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.47600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.74200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 700 REMARK 465 GLY A 701 REMARK 465 MET A 702 REMARK 465 ALA A 703 REMARK 465 PRO A 704 REMARK 465 LYS P 15 REMARK 465 GLY P 16 REMARK 465 MET P 17 REMARK 465 LYS P 18 REMARK 465 ASP P 19 REMARK 465 ASP P 20 REMARK 465 ASP Q 1 REMARK 465 ASP Q 2 REMARK 465 ASP Q 3 REMARK 465 GLU Q 7 REMARK 465 ASP Q 8 REMARK 465 PHE Q 9 REMARK 465 ALA Q 10 REMARK 465 ARG Q 11 REMARK 465 GLN Q 12 REMARK 465 ARG Q 13 REMARK 465 LEU Q 14 REMARK 465 LYS Q 15 REMARK 465 GLY Q 16 REMARK 465 MET Q 17 REMARK 465 LYS Q 18 REMARK 465 ASP Q 19 REMARK 465 ASP Q 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 733 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 889 OH TYR A 931 1.59 REMARK 500 O TRP A 841 NZ LYS A 917 1.88 REMARK 500 OG SER A 761 O LEU A 800 2.14 REMARK 500 N MET A 777 OE1 GLN A 780 2.18 REMARK 500 OD1 ASN A 789 N LEU A 791 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 710 C - N - CA ANGL. DEV. = -9.8 DEGREES REMARK 500 PRO A 921 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 717 -47.95 -29.51 REMARK 500 THR A 728 139.51 -179.57 REMARK 500 GLN A 733 64.14 28.44 REMARK 500 ILE A 772 102.65 -160.24 REMARK 500 PRO A 778 111.31 -27.86 REMARK 500 ASN A 779 -23.11 88.45 REMARK 500 ASP A 812 -152.46 -160.04 REMARK 500 VAL A 824 0.53 -69.60 REMARK 500 ASP A 829 49.87 -79.67 REMARK 500 ASP A 843 -74.16 -45.24 REMARK 500 GLU A 847 -34.29 -32.13 REMARK 500 LYS A 855 126.87 -37.74 REMARK 500 GLU A 856 77.52 39.56 REMARK 500 ALA A 861 -57.94 -25.23 REMARK 500 GLU A 882 45.56 32.58 REMARK 500 ASN A 909 115.03 -6.57 REMARK 500 GLN A 929 -33.89 -39.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 768 PRO A 769 147.64 REMARK 500 ILE Q 4 VAL Q 5 -137.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E42 RELATED DB: PDB REMARK 900 BETA2-ADAPTIN APPENDAGE DOMAIN, FROM CLATHRIN ADAPTOR AP2 REMARK 900 RELATED ID: 1GW5 RELATED DB: PDB REMARK 900 AP2 CLATHRIN ADAPTOR CORE REMARK 900 RELATED ID: 2G30 RELATED DB: PDB REMARK 900 BETA APPENDAGE OF AP2 COMPLEXED WITH ARH PEPTIDE REMARK 900 RELATED ID: 2IV9 RELATED DB: PDB REMARK 900 B-APPENDAGE FROM AP2 IN COMPLEX WITH EPS15 PEPTIDE DBREF 2IV8 A 700 937 UNP P63010 AP2B1_HUMAN 700 937 DBREF 2IV8 P 1 20 UNP P49407 ARRB1_HUMAN 383 402 DBREF 2IV8 Q 1 20 UNP P49407 ARRB1_HUMAN 383 402 SEQRES 1 A 238 ILE GLY MET ALA PRO GLY GLY TYR VAL ALA PRO LYS ALA SEQRES 2 A 238 VAL TRP LEU PRO ALA VAL LYS ALA LYS GLY LEU GLU ILE SEQRES 3 A 238 SER GLY THR PHE THR HIS ARG GLN GLY HIS ILE TYR MET SEQRES 4 A 238 GLU MET ASN PHE THR ASN LYS ALA LEU GLN HIS MET THR SEQRES 5 A 238 ASP PHE ALA ILE GLN PHE ASN LYS ASN SER PHE GLY VAL SEQRES 6 A 238 ILE PRO SER THR PRO LEU ALA ILE HIS THR PRO LEU MET SEQRES 7 A 238 PRO ASN GLN SER ILE ASP VAL SER LEU PRO LEU ASN THR SEQRES 8 A 238 LEU GLY PRO VAL MET LYS MET GLU PRO LEU ASN ASN LEU SEQRES 9 A 238 GLN VAL ALA VAL LYS ASN ASN ILE ASP VAL PHE TYR PHE SEQRES 10 A 238 SER CYS LEU ILE PRO LEU ASN VAL LEU PHE VAL GLU ASP SEQRES 11 A 238 GLY LYS MET GLU ARG GLN VAL PHE LEU ALA THR TRP LYS SEQRES 12 A 238 ASP ILE PRO ASN GLU ASN GLU LEU GLN PHE GLN ILE LYS SEQRES 13 A 238 GLU CYS HIS LEU ASN ALA ASP THR VAL SER SER LYS LEU SEQRES 14 A 238 GLN ASN ASN ASN VAL TYR THR ILE ALA LYS ARG ASN VAL SEQRES 15 A 238 GLU GLY GLN ASP MET LEU TYR GLN SER LEU LYS LEU THR SEQRES 16 A 238 ASN GLY ILE TRP ILE LEU ALA GLU LEU ARG ILE GLN PRO SEQRES 17 A 238 GLY ASN PRO ASN TYR THR LEU SER LEU LYS CYS ARG ALA SEQRES 18 A 238 PRO GLU VAL SER GLN TYR ILE TYR GLN VAL TYR ASP SER SEQRES 19 A 238 ILE LEU LYS ASN SEQRES 1 P 20 ASP ASP ASP ILE VAL PHE GLU ASP PHE ALA ARG GLN ARG SEQRES 2 P 20 LEU LYS GLY MET LYS ASP ASP SEQRES 1 Q 20 ASP ASP ASP ILE VAL PHE GLU ASP PHE ALA ARG GLN ARG SEQRES 2 Q 20 LEU LYS GLY MET LYS ASP ASP FORMUL 4 HOH *16(H2 O) HELIX 1 1 PRO A 716 ALA A 720 5 5 HELIX 2 2 PRO A 821 LEU A 825 5 5 HELIX 3 3 GLU A 833 ILE A 844 1 12 HELIX 4 4 PRO A 845 GLU A 847 5 3 HELIX 5 5 ASN A 860 ASN A 871 1 12 HELIX 6 6 VAL A 923 ASN A 937 1 15 HELIX 7 7 ASP P 1 ARG P 13 1 13 SHEET 1 AA 5 ALA A 712 LEU A 715 0 SHEET 2 AA 5 LEU A 723 HIS A 731 -1 O ILE A 725 N LEU A 715 SHEET 3 AA 5 ILE A 736 ASN A 744 -1 O TYR A 737 N THR A 730 SHEET 4 AA 5 SER A 781 ASN A 789 -1 O ILE A 782 N PHE A 742 SHEET 5 AA 5 ILE A 765 PRO A 766 -1 O ILE A 765 N ASN A 789 SHEET 1 AB 3 ALA A 754 PHE A 757 0 SHEET 2 AB 3 ASN A 802 LYS A 808 -1 O ALA A 806 N GLN A 756 SHEET 3 AB 3 VAL A 813 LEU A 819 -1 O PHE A 814 N VAL A 807 SHEET 1 AC 5 GLU A 849 GLN A 853 0 SHEET 2 AC 5 TYR A 912 CYS A 918 -1 O LEU A 914 N PHE A 852 SHEET 3 AC 5 TRP A 898 ILE A 905 -1 O LEU A 900 N LYS A 917 SHEET 4 AC 5 GLN A 884 LYS A 892 -1 O ASP A 885 N ILE A 905 SHEET 5 AC 5 TYR A 874 ALA A 877 -1 O TYR A 874 N SER A 890 SHEET 1 AD 5 GLU A 849 GLN A 853 0 SHEET 2 AD 5 TYR A 912 CYS A 918 -1 O LEU A 914 N PHE A 852 SHEET 3 AD 5 TRP A 898 ILE A 905 -1 O LEU A 900 N LYS A 917 SHEET 4 AD 5 GLN A 884 LYS A 892 -1 O ASP A 885 N ILE A 905 SHEET 5 AD 5 ASN A 880 VAL A 881 -1 O VAL A 881 N GLN A 884 CISPEP 1 GLU A 798 PRO A 799 0 -3.63 CRYST1 36.952 35.484 190.624 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005246 0.00000