PDB Short entry for 2IYN HEADER TRANSCRIPTION 19-JUL-06 2IYN TITLE THE CO-FACTOR-INDUCED PRE-ACTIVE CONFORMATION IN PHOB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RECEIVER DOMAIN, RESIDUES 1-127; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAT4 KEYWDS TRANSCRIPTION, TRANSCRIPTION FACTOR, PHOSPHATE TRANSPORT, ACTIVATOR, KEYWDS 2 SENSORY TRANSDUCTION, PHOSPHATE REGULATION, TWO-COMPONENT REGULATORY KEYWDS 3 SYSTEM, ALPHA/BETA DOUBLY-WOUND FOLD EXPDTA X-RAY DIFFRACTION AUTHOR M.SOLA,D.L.DREW,A.G.BLANCO,F.X.GOMIS-RUTH,M.COLL REVDAT 4 24-JUL-19 2IYN 1 REMARK REVDAT 3 13-JUL-11 2IYN 1 VERSN REVDAT 2 24-FEB-09 2IYN 1 VERSN REVDAT 1 30-AUG-06 2IYN 0 JRNL AUTH M.SOLA,D.L.DREW,A.G.BLANCO,F.X.GOMIS-RUTH,M.COLL JRNL TITL THE COFACTOR-INDUCED PRE-ACTIVE CONFORMATION IN PHOB. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 1046 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16929106 JRNL DOI 10.1107/S0907444906024541 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 19679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 658 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.39000 REMARK 3 B22 (A**2) : -2.04000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.194 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2798 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3784 ; 1.503 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 6.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2121 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1372 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1716 ; 0.779 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2790 ; 1.403 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1082 ; 2.351 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 994 ; 3.733 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 86 REMARK 3 RESIDUE RANGE : A 96 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0580 -0.5750 19.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.1930 REMARK 3 T33: 0.2475 T12: 0.0784 REMARK 3 T13: 0.1027 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 0.9465 L22: 7.6755 REMARK 3 L33: 2.7647 L12: -1.7353 REMARK 3 L13: 0.2263 L23: 0.2566 REMARK 3 S TENSOR REMARK 3 S11: -0.1074 S12: -0.1254 S13: 0.0674 REMARK 3 S21: -0.1303 S22: 0.2176 S23: -0.7573 REMARK 3 S31: 0.0178 S32: 0.0494 S33: -0.1103 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 84 REMARK 3 RESIDUE RANGE : B 98 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2200 21.5590 22.7350 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.2248 REMARK 3 T33: 0.0256 T12: 0.1027 REMARK 3 T13: 0.0673 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 6.2477 L22: 5.7221 REMARK 3 L33: 0.9919 L12: -3.2566 REMARK 3 L13: -0.7592 L23: 0.2729 REMARK 3 S TENSOR REMARK 3 S11: -0.1541 S12: 0.0850 S13: 0.1449 REMARK 3 S21: 0.0039 S22: 0.1896 S23: -0.0146 REMARK 3 S31: -0.0576 S32: -0.2809 S33: -0.0356 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 85 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7060 9.6640 17.6550 REMARK 3 T TENSOR REMARK 3 T11: 0.5829 T22: 0.7006 REMARK 3 T33: 0.5310 T12: -0.2542 REMARK 3 T13: 0.1046 T23: -0.1553 REMARK 3 L TENSOR REMARK 3 L11: 68.7192 L22: 38.8206 REMARK 3 L33: -12.1093 L12: -0.7768 REMARK 3 L13: -5.8068 L23: -5.2718 REMARK 3 S TENSOR REMARK 3 S11: 1.0133 S12: 0.9136 S13: 1.0363 REMARK 3 S21: -1.5383 S22: -0.3768 S23: 2.0113 REMARK 3 S31: 2.1687 S32: -1.8394 S33: -0.6365 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 84 REMARK 3 RESIDUE RANGE : C 97 C 122 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0930 14.6400 -4.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.1784 REMARK 3 T33: 0.1211 T12: 0.0448 REMARK 3 T13: -0.0895 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 2.7669 L22: 4.0039 REMARK 3 L33: 3.8859 L12: 1.8240 REMARK 3 L13: -0.0106 L23: -2.3954 REMARK 3 S TENSOR REMARK 3 S11: -0.1695 S12: 0.0498 S13: 0.1671 REMARK 3 S21: 0.3070 S22: 0.0924 S23: -0.1379 REMARK 3 S31: -0.5695 S32: -0.0628 S33: 0.0771 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1122 A 1122 REMARK 3 RESIDUE RANGE : B 1125 B 1125 REMARK 3 RESIDUE RANGE : C 1123 C 1123 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7740 4.9270 12.8690 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.2434 REMARK 3 T33: 0.2158 T12: -0.0090 REMARK 3 T13: -0.0213 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 0.6438 L22: -0.8186 REMARK 3 L33: 9.9839 L12: 0.1983 REMARK 3 L13: -2.9023 L23: -2.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.1594 S12: -0.0437 S13: 0.1328 REMARK 3 S21: -0.3999 S22: -0.0008 S23: 0.0898 REMARK 3 S31: -0.1503 S32: 0.0911 S33: 0.1602 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2042 REMARK 3 RESIDUE RANGE : B 2001 B 2032 REMARK 3 RESIDUE RANGE : C 2001 C 2034 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4210 9.9340 13.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.2700 REMARK 3 T33: 0.1725 T12: 0.0788 REMARK 3 T13: 0.0327 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.0659 L22: 0.2652 REMARK 3 L33: 0.6499 L12: 0.0659 REMARK 3 L13: 0.2843 L23: -0.4343 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.0138 S13: 0.0414 REMARK 3 S21: 0.0124 S22: 0.0514 S23: -0.0065 REMARK 3 S31: 0.0952 S32: -0.0711 S33: -0.0348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.837 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 45.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.37100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.91450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.37100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.91450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.75500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.37100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.91450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.75500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.37100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.91450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 87 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 ARG A 91 REMARK 465 VAL A 92 REMARK 465 ARG A 93 REMARK 465 GLY A 94 REMARK 465 LEU A 95 REMARK 465 ARG A 122 REMARK 465 ILE A 123 REMARK 465 SER A 124 REMARK 465 PRO A 125 REMARK 465 MET A 126 REMARK 465 ALA A 127 REMARK 465 PRO B 125 REMARK 465 MET B 126 REMARK 465 ALA B 127 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ARG C 85 REMARK 465 GLY C 86 REMARK 465 GLU C 87 REMARK 465 GLU C 88 REMARK 465 GLU C 89 REMARK 465 ASP C 90 REMARK 465 ARG C 91 REMARK 465 VAL C 92 REMARK 465 ARG C 93 REMARK 465 GLY C 94 REMARK 465 LEU C 95 REMARK 465 GLU C 96 REMARK 465 ILE C 123 REMARK 465 SER C 124 REMARK 465 PRO C 125 REMARK 465 MET C 126 REMARK 465 ALA C 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2031 O HOH A 2032 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 48 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 100 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 34 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 53 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 76 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 100 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 101 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 48 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 100 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 3 -77.11 -57.55 REMARK 500 LEU B 49 144.29 -171.10 REMARK 500 GLU B 87 -58.03 -29.29 REMARK 500 ARG B 93 -176.56 -63.18 REMARK 500 LEU B 95 -75.98 -95.44 REMARK 500 GLU B 96 53.97 0.58 REMARK 500 THR B 97 -68.45 -178.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1122 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 55 O REMARK 620 2 ASP A 10 OD1 88.1 REMARK 620 3 ASP A 10 OD2 94.6 46.5 REMARK 620 4 ASP A 53 OD1 71.9 78.3 124.1 REMARK 620 5 HOH A2019 O 148.3 93.3 109.2 77.4 REMARK 620 6 HOH A2020 O 86.4 164.3 148.7 86.0 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1125 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 53 OD1 REMARK 620 2 MET B 55 O 77.9 REMARK 620 3 HOH B2002 O 94.7 159.7 REMARK 620 4 HOH B2016 O 89.4 70.0 91.3 REMARK 620 5 ASP B 10 OD1 94.7 110.3 89.0 175.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1123 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C2002 O REMARK 620 2 ASP C 10 OD1 86.8 REMARK 620 3 MET C 55 O 173.3 93.3 REMARK 620 4 ASP C 53 OD1 106.5 90.5 80.2 REMARK 620 5 HOH C2016 O 90.6 176.9 89.5 88.6 REMARK 620 6 HOH C2003 O 88.7 81.5 84.7 162.5 100.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C1123 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B00 RELATED DB: PDB REMARK 900 PHOB RECEIVER DOMAIN FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1GXP RELATED DB: PDB REMARK 900 PHOB EFFECTOR DOMAIN IN COMPLEX WITH PHO BOX DNA. REMARK 900 RELATED ID: 1GXQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOB EFFECTOR DOMAIN REMARK 900 RELATED ID: 1QQI RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE DEOXYRIBONUCLEIC ACID-BINDING AND REMARK 900 TRANSACTIVATION DOMAIN OF PHOB FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1ZES RELATED DB: PDB REMARK 900 BEF3- ACTIVATED PHOB RECEIVER DOMAIN DBREF 2IYN A 1 127 UNP P0AFJ5 PHOB_ECOLI 1 127 DBREF 2IYN B 1 127 UNP P0AFJ5 PHOB_ECOLI 1 127 DBREF 2IYN C 1 127 UNP P0AFJ5 PHOB_ECOLI 1 127 SEQRES 1 A 127 MET ALA ARG ARG ILE LEU VAL VAL GLU ASP GLU ALA PRO SEQRES 2 A 127 ILE ARG GLU MET VAL CYS PHE VAL LEU GLU GLN ASN GLY SEQRES 3 A 127 PHE GLN PRO VAL GLU ALA GLU ASP TYR ASP SER ALA VAL SEQRES 4 A 127 ASN GLN LEU ASN GLU PRO TRP PRO ASP LEU ILE LEU LEU SEQRES 5 A 127 ASP TRP MET LEU PRO GLY GLY SER GLY ILE GLN PHE ILE SEQRES 6 A 127 LYS HIS LEU LYS ARG GLU SER MET THR ARG ASP ILE PRO SEQRES 7 A 127 VAL VAL MET LEU THR ALA ARG GLY GLU GLU GLU ASP ARG SEQRES 8 A 127 VAL ARG GLY LEU GLU THR GLY ALA ASP ASP TYR ILE THR SEQRES 9 A 127 LYS PRO PHE SER PRO LYS GLU LEU VAL ALA ARG ILE LYS SEQRES 10 A 127 ALA VAL MET ARG ARG ILE SER PRO MET ALA SEQRES 1 B 127 MET ALA ARG ARG ILE LEU VAL VAL GLU ASP GLU ALA PRO SEQRES 2 B 127 ILE ARG GLU MET VAL CYS PHE VAL LEU GLU GLN ASN GLY SEQRES 3 B 127 PHE GLN PRO VAL GLU ALA GLU ASP TYR ASP SER ALA VAL SEQRES 4 B 127 ASN GLN LEU ASN GLU PRO TRP PRO ASP LEU ILE LEU LEU SEQRES 5 B 127 ASP TRP MET LEU PRO GLY GLY SER GLY ILE GLN PHE ILE SEQRES 6 B 127 LYS HIS LEU LYS ARG GLU SER MET THR ARG ASP ILE PRO SEQRES 7 B 127 VAL VAL MET LEU THR ALA ARG GLY GLU GLU GLU ASP ARG SEQRES 8 B 127 VAL ARG GLY LEU GLU THR GLY ALA ASP ASP TYR ILE THR SEQRES 9 B 127 LYS PRO PHE SER PRO LYS GLU LEU VAL ALA ARG ILE LYS SEQRES 10 B 127 ALA VAL MET ARG ARG ILE SER PRO MET ALA SEQRES 1 C 127 MET ALA ARG ARG ILE LEU VAL VAL GLU ASP GLU ALA PRO SEQRES 2 C 127 ILE ARG GLU MET VAL CYS PHE VAL LEU GLU GLN ASN GLY SEQRES 3 C 127 PHE GLN PRO VAL GLU ALA GLU ASP TYR ASP SER ALA VAL SEQRES 4 C 127 ASN GLN LEU ASN GLU PRO TRP PRO ASP LEU ILE LEU LEU SEQRES 5 C 127 ASP TRP MET LEU PRO GLY GLY SER GLY ILE GLN PHE ILE SEQRES 6 C 127 LYS HIS LEU LYS ARG GLU SER MET THR ARG ASP ILE PRO SEQRES 7 C 127 VAL VAL MET LEU THR ALA ARG GLY GLU GLU GLU ASP ARG SEQRES 8 C 127 VAL ARG GLY LEU GLU THR GLY ALA ASP ASP TYR ILE THR SEQRES 9 C 127 LYS PRO PHE SER PRO LYS GLU LEU VAL ALA ARG ILE LYS SEQRES 10 C 127 ALA VAL MET ARG ARG ILE SER PRO MET ALA HET MG A1122 1 HET MG B1125 1 HET MG C1123 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *108(H2 O) HELIX 1 1 GLU A 11 ASN A 25 1 15 HELIX 2 2 ASP A 34 ASN A 40 1 7 HELIX 3 3 GLY A 61 ARG A 70 1 10 HELIX 4 4 SER A 108 ARG A 121 1 14 HELIX 5 5 GLU B 11 ASN B 25 1 15 HELIX 6 6 ASP B 34 ASN B 40 1 7 HELIX 7 7 SER B 60 ARG B 70 1 11 HELIX 8 8 GLY B 86 ARG B 93 1 8 HELIX 9 9 SER B 108 SER B 124 1 17 HELIX 10 10 GLU C 11 GLN C 24 1 14 HELIX 11 11 ASP C 34 ASN C 40 1 7 HELIX 12 12 SER C 60 ARG C 70 1 11 HELIX 13 13 SER C 108 ARG C 122 1 15 SHEET 1 AA 5 GLN A 28 ALA A 32 0 SHEET 2 AA 5 ARG A 4 VAL A 8 1 O ILE A 5 N VAL A 30 SHEET 3 AA 5 LEU A 49 ASP A 53 1 O LEU A 49 N LEU A 6 SHEET 4 AA 5 VAL A 79 ALA A 84 1 O VAL A 80 N LEU A 52 SHEET 5 AA 5 ASP A 101 LYS A 105 1 O ASP A 101 N MET A 81 SHEET 1 AB 2 MET A 55 LEU A 56 0 SHEET 2 AB 2 GLY A 59 SER A 60 -1 O GLY A 59 N LEU A 56 SHEET 1 BA 5 GLN B 28 ALA B 32 0 SHEET 2 BA 5 ARG B 4 VAL B 8 1 O ILE B 5 N VAL B 30 SHEET 3 BA 5 LEU B 49 ASP B 53 1 O LEU B 49 N LEU B 6 SHEET 4 BA 5 VAL B 79 THR B 83 1 O VAL B 80 N LEU B 52 SHEET 5 BA 5 ASP B 101 THR B 104 1 O ASP B 101 N MET B 81 SHEET 1 CA 5 GLN C 28 ALA C 32 0 SHEET 2 CA 5 ARG C 4 VAL C 8 1 O ILE C 5 N VAL C 30 SHEET 3 CA 5 LEU C 49 ASP C 53 1 O LEU C 49 N LEU C 6 SHEET 4 CA 5 VAL C 79 THR C 83 1 O VAL C 80 N LEU C 52 SHEET 5 CA 5 ASP C 101 THR C 104 1 O ASP C 101 N MET C 81 LINK MG MG A1122 O MET A 55 1555 1555 2.53 LINK MG MG A1122 OD1 ASP A 10 1555 1555 2.03 LINK MG MG A1122 OD2 ASP A 10 1555 1555 2.95 LINK MG MG A1122 OD1 ASP A 53 1555 1555 2.01 LINK MG MG A1122 O HOH A2019 1555 1555 2.13 LINK MG MG A1122 O HOH A2020 1555 1555 2.02 LINK MG MG B1125 OD1 ASP B 53 1555 1555 1.83 LINK MG MG B1125 O MET B 55 1555 1555 2.76 LINK MG MG B1125 O HOH B2002 1555 1555 2.07 LINK MG MG B1125 O HOH B2016 1555 1555 2.12 LINK MG MG B1125 OD1 ASP B 10 1555 1555 2.00 LINK MG MG C1123 O HOH C2002 1555 1555 1.95 LINK MG MG C1123 OD1 ASP C 10 1555 1555 2.19 LINK MG MG C1123 O MET C 55 1555 1555 2.19 LINK MG MG C1123 OD1 ASP C 53 1555 1555 1.85 LINK MG MG C1123 O HOH C2016 1555 1555 2.17 LINK MG MG C1123 O HOH C2003 1555 1555 2.08 CISPEP 1 GLU A 44 PRO A 45 0 -1.06 CISPEP 2 LYS A 105 PRO A 106 0 1.62 CISPEP 3 GLU B 44 PRO B 45 0 -5.73 CISPEP 4 LYS B 105 PRO B 106 0 -9.22 CISPEP 5 GLU C 44 PRO C 45 0 -3.42 CISPEP 6 LYS C 105 PRO C 106 0 2.85 SITE 1 AC1 5 ASP A 10 ASP A 53 MET A 55 HOH A2019 SITE 2 AC1 5 HOH A2020 SITE 1 AC2 5 ASP B 10 ASP B 53 MET B 55 HOH B2002 SITE 2 AC2 5 HOH B2016 SITE 1 AC3 6 ASP C 10 ASP C 53 MET C 55 HOH C2002 SITE 2 AC3 6 HOH C2003 HOH C2016 CRYST1 50.742 105.829 135.510 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007380 0.00000