PDB Short entry for 2J4S HEADER OXIDOREDUCTASE 05-SEP-06 2J4S TITLE P450 BM3 HEME DOMAIN IN COMPLEX WITH DMSO COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL P-450\:NADPH-P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEME DOMAIN, RESIDUES 1-455; COMPND 5 SYNONYM: BM3 P450, CYTOCHROME P450, BM-3, P450BM-3; COMPND 6 EC: 1.14.14.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS FLAVOPROTEIN, MONOOXYGENASE, METAL-BINDING, P450, IRON, HEME, KEYWDS 2 OXIDOREDUCTASE, DMSO-INHIBITION, ORGANIC SOLVENT EXPDTA X-RAY DIFFRACTION AUTHOR J.KUPER,W.TUCK-SENG,D.ROCCATANO,M.WILMANNS,U.SCHWANEBERG REVDAT 3 24-JUL-19 2J4S 1 REMARK REVDAT 2 24-FEB-09 2J4S 1 VERSN REVDAT 1 15-MAY-07 2J4S 0 JRNL AUTH J.KUPER,T.S.WONG,D.ROCCATANO,M.WILMANNS,U.SCHWANEBERG JRNL TITL UNDERSTANDING A MECHANISM OF ORGANIC COSOLVENT INACTIVATION JRNL TITL 2 IN HEME MONOOXYGENASE P450 BM-3. JRNL REF J.AM.CHEM.SOC. V. 129 5786 2007 JRNL REFN ISSN 0002-7863 JRNL PMID 17429965 JRNL DOI 10.1021/JA067036X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 62217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 3151 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 8.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 21.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 876 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07500 REMARK 3 B22 (A**2) : -0.12700 REMARK 3 B33 (A**2) : 0.05200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.218 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7589 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10266 ; 1.555 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 900 ; 6.381 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 368 ;38.206 ;24.837 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1352 ;16.512 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.832 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1092 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5758 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4239 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5252 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 679 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 95 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4610 ; 0.840 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7296 ; 1.412 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3310 ; 2.364 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2965 ; 3.595 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290029903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 23.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.530 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.21 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.79900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.63700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.14850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.63700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.79900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.14850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 243 REMARK 465 GLU A 244 REMARK 465 THR A 245 REMARK 465 PRO B 243 REMARK 465 GLU B 244 REMARK 465 THR B 245 REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2013 O HOH B 2014 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 148 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 ILE A 263 CG1 - CB - CG2 ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -132.51 62.33 REMARK 500 PHE A 158 26.24 -150.41 REMARK 500 ASN A 192 72.09 -117.96 REMARK 500 THR A 436 -120.21 -113.14 REMARK 500 ILE B 2 118.95 -39.58 REMARK 500 LYS B 15 -127.67 51.52 REMARK 500 ASP B 84 35.56 -97.61 REMARK 500 PHE B 158 31.76 -144.10 REMARK 500 HIS B 171 138.07 -38.50 REMARK 500 ASN B 192 75.20 -119.05 REMARK 500 PRO B 196 -6.82 -44.20 REMARK 500 ASP B 231 33.87 -86.69 REMARK 500 GLU B 344 -34.85 -132.73 REMARK 500 ASP B 370 36.76 -89.13 REMARK 500 THR B 436 -125.71 -129.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 136 GLU B 137 -144.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1456 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A1456 NA 104.8 REMARK 620 3 HEM A1456 NB 91.4 91.6 REMARK 620 4 HEM A1456 NC 90.7 164.4 87.8 REMARK 620 5 HEM A1456 ND 102.5 89.2 165.5 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1456 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B1456 NA 99.6 REMARK 620 3 HEM B1456 NB 89.6 89.1 REMARK 620 4 HEM B1456 NC 90.5 169.6 88.7 REMARK 620 5 HEM B1456 ND 102.4 89.5 168.0 90.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1457 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 23 OD1 REMARK 620 2 GLU A 348 OE1 106.7 REMARK 620 3 ASP A 338 OD2 130.2 122.7 REMARK 620 4 ASP A 338 OD1 138.2 82.2 52.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1457 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A1456 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B1456 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1457 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B1459 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B1460 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BU7 RELATED DB: PDB REMARK 900 CRYOGENIC STRUCTURE OF CYTOCHROME P450BM-3 HEME DOMAIN REMARK 900 RELATED ID: 1BVY RELATED DB: PDB REMARK 900 COMPLEX OF THE HEME AND FMN-BINDING DOMAINS OF THE CYTOCHROME REMARK 900 P450(BM-3) REMARK 900 RELATED ID: 1FAG RELATED DB: PDB REMARK 900 STRUCTURE OF CYTOCHROME P450 REMARK 900 RELATED ID: 1FAH RELATED DB: PDB REMARK 900 STRUCTURE OF CYTOCHROME P450 REMARK 900 RELATED ID: 1JME RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHE393HIS CYTOCHROME P450 BM3 REMARK 900 RELATED ID: 1JPZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX OF THE HEME DOMAIN OF P450BM-3 WITH REMARK 900 N-PALMITOYLGLYCINE REMARK 900 RELATED ID: 1P0V RELATED DB: PDB REMARK 900 F393A MUTANT HEME DOMAIN OF FLAVOCYTOCHROME P450 BM3 REMARK 900 RELATED ID: 1P0W RELATED DB: PDB REMARK 900 F393W MUTANT HEME DOMAIN OF FLAVOCYTOCHROME P450 BM3 REMARK 900 RELATED ID: 1P0X RELATED DB: PDB REMARK 900 F393Y MUTANT HEME DOMAIN OF FLAVOCYTOCHROME P450 BM3 REMARK 900 RELATED ID: 1SMI RELATED DB: PDB REMARK 900 A SINGLE MUTATION OF P450 BM3 INDUCES THE REMARK 900 CONFORMATIONALREARRANGEMENT SEEN UPON SUBSTRATE -BINDING IN WILD- REMARK 900 TYPEENZYME REMARK 900 RELATED ID: 1SMJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE A264E MUTANT OF CYTOCHROME P450 BM3COMPLEXED WITH REMARK 900 PALMITOLEATE REMARK 900 RELATED ID: 1YQO RELATED DB: PDB REMARK 900 T268A MUTANT HEME DOMAIN OF FLAVOCYTOCHROME P450 BM3 REMARK 900 RELATED ID: 1YQP RELATED DB: PDB REMARK 900 T268N MUTANT CYTOCHROME DOMAIN OF FLAVOCYTOCHROME P450 BM3 REMARK 900 RELATED ID: 2BMH RELATED DB: PDB REMARK 900 RELATED ID: 2HPD RELATED DB: PDB REMARK 900 RELATED ID: 2J1M RELATED DB: PDB REMARK 900 BM3 P450 IN COMPLEX WITH DMSO DBREF 2J4S A 1 455 UNP P14779 CPXB_BACME 1 455 DBREF 2J4S B 1 455 UNP P14779 CPXB_BACME 1 455 SEQRES 1 A 455 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 A 455 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 A 455 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 A 455 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 A 455 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 A 455 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 A 455 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 A 455 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 A 455 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 A 455 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 A 455 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 A 455 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 A 455 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 A 455 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 A 455 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 A 455 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 A 455 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 A 455 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 A 455 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 A 455 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 A 455 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 A 455 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 A 455 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 A 455 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 A 455 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 A 455 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 A 455 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 A 455 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 A 455 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 A 455 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 A 455 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 A 455 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 A 455 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 A 455 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 A 455 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 1 B 455 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 B 455 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 B 455 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 B 455 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 B 455 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 B 455 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 B 455 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 B 455 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 B 455 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 B 455 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 B 455 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 B 455 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 B 455 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 B 455 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 B 455 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 B 455 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 B 455 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 B 455 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 B 455 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 B 455 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 B 455 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 B 455 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 B 455 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 B 455 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 B 455 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 B 455 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 B 455 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 B 455 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 B 455 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 B 455 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 B 455 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 B 455 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 B 455 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 B 455 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 B 455 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU HET HEM A1456 43 HET PEG A1457 7 HET PEG A1458 7 HET HEM B1456 43 HET ZN B1457 1 HET PEG B1458 7 HET PEG B1459 7 HET PEG B1460 7 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ZN ZINC ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 PEG 5(C4 H10 O3) FORMUL 7 ZN ZN 2+ FORMUL 11 HOH *455(H2 O) HELIX 1 1 PHE A 11 LYS A 15 5 5 HELIX 2 2 ASN A 16 ASN A 21 5 6 HELIX 3 3 LYS A 24 GLY A 37 1 14 HELIX 4 4 SER A 54 CYS A 62 1 9 HELIX 5 5 SER A 72 GLY A 83 1 12 HELIX 6 6 GLY A 85 SER A 89 5 5 HELIX 7 7 GLU A 93 SER A 108 1 16 HELIX 8 8 ALA A 111 ARG A 132 1 22 HELIX 9 9 VAL A 141 ASN A 159 1 19 HELIX 10 10 ASN A 163 ARG A 167 5 5 HELIX 11 11 HIS A 171 LYS A 187 1 17 HELIX 12 12 LEU A 188 ARG A 190 5 3 HELIX 13 13 ASP A 195 ALA A 197 5 3 HELIX 14 14 TYR A 198 GLY A 227 1 30 HELIX 15 15 ASP A 232 GLY A 240 1 9 HELIX 16 16 ASP A 250 ASN A 283 1 34 HELIX 17 17 ASN A 283 LEU A 298 1 16 HELIX 18 18 SER A 304 LEU A 311 1 8 HELIX 19 19 LEU A 311 TRP A 325 1 15 HELIX 20 20 ILE A 357 HIS A 361 1 5 HELIX 21 21 ASP A 363 GLY A 368 1 6 HELIX 22 22 ARG A 375 GLU A 380 5 6 HELIX 23 23 ASN A 381 ILE A 385 5 5 HELIX 24 24 ASN A 395 ALA A 399 5 5 HELIX 25 25 GLY A 402 HIS A 420 1 19 HELIX 26 26 PHE B 11 LYS B 15 5 5 HELIX 27 27 ASN B 16 ASN B 21 5 6 HELIX 28 28 LYS B 24 GLY B 37 1 14 HELIX 29 29 SER B 54 CYS B 62 1 9 HELIX 30 30 SER B 72 GLY B 83 1 12 HELIX 31 31 GLU B 93 LEU B 104 1 12 HELIX 32 32 PRO B 105 PHE B 107 5 3 HELIX 33 33 SER B 108 ARG B 132 1 25 HELIX 34 34 VAL B 141 ASN B 159 1 19 HELIX 35 35 ASN B 163 ARG B 167 5 5 HELIX 36 36 HIS B 171 LEU B 188 1 18 HELIX 37 37 ASP B 195 ALA B 197 5 3 HELIX 38 38 TYR B 198 GLY B 227 1 30 HELIX 39 39 ASP B 232 GLY B 240 1 9 HELIX 40 40 ASP B 250 ASN B 283 1 34 HELIX 41 41 ASN B 283 LEU B 298 1 16 HELIX 42 42 SER B 304 VAL B 308 5 5 HELIX 43 43 LEU B 311 TRP B 325 1 15 HELIX 44 44 ILE B 357 HIS B 361 1 5 HELIX 45 45 ASP B 363 GLY B 368 1 6 HELIX 46 46 ARG B 375 GLU B 380 5 6 HELIX 47 47 ASN B 381 ILE B 385 5 5 HELIX 48 48 ASN B 395 ALA B 399 5 5 HELIX 49 49 GLY B 402 HIS B 420 1 19 SHEET 1 AA 5 ILE A 39 ALA A 44 0 SHEET 2 AA 5 ARG A 47 LEU A 52 -1 O ARG A 47 N ALA A 44 SHEET 3 AA 5 GLU A 352 LEU A 356 1 O GLU A 352 N ARG A 50 SHEET 4 AA 5 ALA A 330 ALA A 335 -1 O PHE A 331 N VAL A 355 SHEET 5 AA 5 PHE A 67 LYS A 69 -1 O ASP A 68 N TYR A 334 SHEET 1 AB 3 ILE A 139 GLU A 140 0 SHEET 2 AB 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AB 3 PHE A 421 GLU A 424 -1 O ASP A 422 N LYS A 449 SHEET 1 AC 2 THR A 339 LEU A 341 0 SHEET 2 AC 2 TYR A 345 LEU A 347 -1 O TYR A 345 N LEU A 341 SHEET 1 AD 2 ILE A 433 GLU A 435 0 SHEET 2 AD 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 BA 5 ILE B 39 ALA B 44 0 SHEET 2 BA 5 ARG B 47 LEU B 52 -1 O ARG B 47 N ALA B 44 SHEET 3 BA 5 GLU B 352 LEU B 356 1 O GLU B 352 N ARG B 50 SHEET 4 BA 5 ALA B 330 ALA B 335 -1 O PHE B 331 N VAL B 355 SHEET 5 BA 5 PHE B 67 LYS B 69 -1 O ASP B 68 N TYR B 334 SHEET 1 BB 3 ILE B 139 GLU B 140 0 SHEET 2 BB 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 BB 3 PHE B 421 GLU B 424 -1 O ASP B 422 N LYS B 449 SHEET 1 BC 2 THR B 339 LEU B 341 0 SHEET 2 BC 2 TYR B 345 LEU B 347 -1 O TYR B 345 N LEU B 341 SHEET 1 BD 2 ILE B 433 GLU B 435 0 SHEET 2 BD 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK FE HEM A1456 SG CYS A 400 1555 1555 2.31 LINK FE HEM B1456 SG CYS B 400 1555 1555 2.28 LINK ZN ZN B1457 OD1 ASP B 23 1555 1555 1.96 LINK ZN ZN B1457 OE1 GLU A 348 1555 4455 2.12 LINK ZN ZN B1457 OD2 ASP A 338 1555 4455 2.09 LINK ZN ZN B1457 OD1 ASP A 338 1555 4455 2.76 SITE 1 AC1 3 ASP A 338 GLU A 348 ASP B 23 SITE 1 AC2 27 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC2 27 PHE A 107 ALA A 264 GLY A 265 THR A 268 SITE 3 AC2 27 THR A 269 THR A 327 PHE A 331 PRO A 392 SITE 4 AC2 27 PHE A 393 GLY A 394 ARG A 398 ALA A 399 SITE 5 AC2 27 CYS A 400 ILE A 401 PHE A 405 ALA A 406 SITE 6 AC2 27 HOH A2239 HOH A2240 HOH A2241 HOH A2242 SITE 7 AC2 27 HOH A2243 HOH A2244 HOH A2245 SITE 1 AC3 26 LYS B 69 LEU B 86 PHE B 87 TRP B 96 SITE 2 AC3 26 PHE B 107 ALA B 264 GLY B 265 THR B 268 SITE 3 AC3 26 THR B 269 LEU B 272 THR B 327 PHE B 331 SITE 4 AC3 26 PRO B 392 PHE B 393 GLY B 394 ARG B 398 SITE 5 AC3 26 ALA B 399 CYS B 400 ILE B 401 GLY B 402 SITE 6 AC3 26 ALA B 406 HOH B2204 HOH B2205 HOH B2207 SITE 7 AC3 26 HOH B2208 HOH B2209 SITE 1 AC4 3 LYS A 24 GLN A 27 LYS A 31 SITE 1 AC5 3 ALA A 74 MET A 354 HOH A2246 SITE 1 AC6 3 GLN B 27 LYS B 31 PEG B1459 SITE 1 AC7 3 VAL A 48 LYS B 31 PEG B1458 SITE 1 AC8 5 TRP A 90 HIS A 92 GLY A 350 PRO B 18 SITE 2 AC8 5 ASN B 21 CRYST1 79.598 88.297 151.274 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012563 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006611 0.00000 MTRIX1 1 0.226300 0.940900 0.252100 13.22000 1 MTRIX2 1 -0.934900 0.137200 0.327200 -29.60000 1 MTRIX3 1 0.273300 -0.309700 0.910700 15.72000 1