PDB Short entry for 2J5F HEADER TRANSFERASE 14-SEP-06 2J5F TITLE CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN TITLE 2 IRREVERSIBLE INHIBITOR 34-JAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 696-1022; COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACG2T KEYWDS CELL CYCLE, ATP-BINDING, TRANSFERASE, POLYMORPHISM, IRREVERSIBLE KEYWDS 2 INHIBITOR, TYROSINE-PROTEIN KINASE, EGFR, KINASE, 34-JAB, MEMBRANE, KEYWDS 3 RECEPTOR, WILD-TYPE, EPIDERMAL GROWTH FACTOR, ANTI-ONCOGENE, KEYWDS 4 TRANSMEMBRANE, NUCLEOTIDE-BINDING, ALTERNATIVE SPLICING, UBL KEYWDS 5 CONJUGATION, PHOSPHORYLATION, DISEASE MUTATION, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.-H.YUN,M.J.ECK REVDAT 5 13-DEC-23 2J5F 1 LINK REVDAT 4 24-FEB-09 2J5F 1 VERSN REVDAT 3 17-JUL-07 2J5F 1 JRNL REVDAT 2 13-MAR-07 2J5F 1 JRNL REVDAT 1 27-FEB-07 2J5F 0 JRNL AUTH J.A.BLAIR,D.RAUH,C.KUNG,C.-H.YUN,Q.-W.FAN,H.RODE,C.ZHANG, JRNL AUTH 2 M.J.ECK,W.A.WEISS,K.M.SHOKAT JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF AFFINITY PROBES FOR TYROSINE JRNL TITL 2 KINASES USING CHEMICAL GENETICS. JRNL REF NAT.CHEM.BIOL. V. 3 229 2007 JRNL REFN ISSN 1552-4450 JRNL PMID 17334377 JRNL DOI 10.1038/NCHEMBIO866 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2523 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3417 ; 1.580 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;40.952 ;24.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;20.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.193 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1864 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1266 ; 0.267 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1734 ; 0.329 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 99 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.232 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1538 ; 0.915 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2494 ; 1.741 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 2.010 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 923 ; 3.484 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1290029976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ITW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NAK TARTRATE, 0.1M HEPES PH 7.5, REMARK 280 PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.93800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.93800 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.93800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.93800 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.93800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.93800 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.93800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.93800 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.93800 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.93800 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.93800 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.93800 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.93800 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.93800 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.93800 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.93800 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.93800 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.93800 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.93800 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.93800 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.93800 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.93800 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.93800 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.93800 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.93800 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.93800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 867 REMARK 465 GLU A 868 REMARK 465 TYR A 869 REMARK 465 HIS A 870 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 GLY A 873 REMARK 465 GLY A 874 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 986 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 988 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 991 OG REMARK 470 PRO A 992 CG CD REMARK 470 LEU A1001 CG CD1 CD2 REMARK 470 GLN A1020 CA C O CB CG CD OE1 REMARK 470 GLN A1020 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 714 OE1 GLU A 1005 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 713 CE LYS A 713 NZ 0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 701 42.51 -89.73 REMARK 500 LYS A 714 154.04 43.91 REMARK 500 ALA A 722 -26.40 61.74 REMARK 500 GLU A 749 39.93 154.19 REMARK 500 ALA A 750 -84.85 49.49 REMARK 500 THR A 751 1.88 -160.04 REMARK 500 SER A 752 99.03 -41.17 REMARK 500 PRO A 753 -37.32 -29.85 REMARK 500 LYS A 754 -31.27 -39.91 REMARK 500 THR A 783 111.90 -179.66 REMARK 500 SER A 784 -88.20 57.63 REMARK 500 LYS A 806 2.32 -39.34 REMARK 500 ARG A 832 45.76 39.58 REMARK 500 ARG A 836 -3.00 69.15 REMARK 500 ASP A 837 45.12 -152.03 REMARK 500 ASP A 855 79.04 64.00 REMARK 500 ALA A 864 141.87 -36.87 REMARK 500 ASP A 916 -73.51 -39.80 REMARK 500 ASP A 974 56.76 -142.53 REMARK 500 GLN A 982 109.64 -46.42 REMARK 500 GLU A 985 -90.42 -144.50 REMARK 500 ARG A 986 39.30 -70.88 REMARK 500 PRO A 990 170.80 -55.38 REMARK 500 MET A1002 -121.85 -177.76 REMARK 500 ASP A1003 172.11 43.65 REMARK 500 GLU A1004 150.37 54.27 REMARK 500 GLU A1005 -119.19 -27.79 REMARK 500 MET A1007 27.97 -152.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DJK A3021 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DNQ RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE FIRST AND SECOND DOMAINS OF THE HUMAN REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN REMARK 900 RELATED ID: 1DNR RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE THIRD AND FOURTH DOMAINS OF THE HUMAN REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN REMARK 900 RELATED ID: 1IVO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN EPIDERMAL GROWTHFACTOR REMARK 900 AND RECEPTOR EXTRACELLULAR DOMAINS. REMARK 900 RELATED ID: 1M14 RELATED DB: PDB REMARK 900 TYROSINE KINASE DOMAIN FROM EPIDERMAL GROWTH FACTOR RECEPTOR REMARK 900 RELATED ID: 1M17 RELATED DB: PDB REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR TYROSINE KINASE DOMAINWITH 4- REMARK 900 ANILINOQUINAZOLINE INHIBITOR ERLOTINIB REMARK 900 RELATED ID: 1MOX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN EPIDERMAL GROWTH FACTOR REMARK 900 RECEPTOR(RESIDUES 1-501) IN COMPLEX WITH TGF-ALPHA REMARK 900 RELATED ID: 1NQL RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN EPIDERMALGROWTH REMARK 900 FACTOR (EGF) RECEPTOR IN AN INACTIVE (LOW PH)COMPLEX WITH EGF. REMARK 900 RELATED ID: 1XKK RELATED DB: PDB REMARK 900 EGFR KINASE DOMAIN COMPLEXED WITH A QUINAZOLINE INHIBITOR-GW572016 REMARK 900 RELATED ID: 1YY9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE EPIDERMALGROWTH FACTOR REMARK 900 RECEPTOR IN COMPLEX WITH THE FAB FRAGMENT OFCETUXIMAB/ERBITUX/ IMC- REMARK 900 C225 REMARK 900 RELATED ID: 1Z9I RELATED DB: PDB REMARK 900 A STRUCTURAL MODEL FOR THE MEMBRANE-BOUND FORM OF THEJUXTAMEMBRANE REMARK 900 DOMAIN OF THE EPIDERMAL GROWTH FACTORRECEPTOR REMARK 900 RELATED ID: 2GS2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE EGFR KINASE DOMAIN REMARK 900 RELATED ID: 2GS7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE INACTIVE EGFR KINASE DOMAIN INCOMPLEX WITH REMARK 900 AMP-PNP REMARK 900 RELATED ID: 2ITN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AMP-PNP REMARK 900 RELATED ID: 2ITO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH IRESSA REMARK 900 RELATED ID: 2ITP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AEE788 REMARK 900 RELATED ID: 2ITQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX REMARK 900 WITH AFN941 REMARK 900 RELATED ID: 2ITT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AEE788 REMARK 900 RELATED ID: 2ITU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AFN941 REMARK 900 RELATED ID: 2ITV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH AMP-PNP REMARK 900 RELATED ID: 2ITW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AFN941 REMARK 900 RELATED ID: 2ITX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AMP-PNP REMARK 900 RELATED ID: 2ITY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH IRESSA REMARK 900 RELATED ID: 2ITZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX REMARK 900 WITH IRESSA REMARK 900 RELATED ID: 2J5E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN REMARK 900 IRREVERSIBLE INHIBITOR 13- JAB DBREF 2J5F A 696 1022 UNP P00533 EGFR_HUMAN 696 1022 SEQRES 1 A 327 GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE LEU LYS SEQRES 2 A 327 GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER GLY SEQRES 3 A 327 ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO GLU SEQRES 4 A 327 GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU LEU SEQRES 5 A 327 ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE LEU SEQRES 6 A 327 ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO HIS SEQRES 7 A 327 VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR VAL SEQRES 8 A 327 GLN LEU ILE THR GLN LEU MET PRO PHE GLY CYS LEU LEU SEQRES 9 A 327 ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER GLN SEQRES 10 A 327 TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY MET SEQRES 11 A 327 ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP LEU SEQRES 12 A 327 ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS VAL SEQRES 13 A 327 LYS ILE THR ASP PHE GLY LEU ALA LYS LEU LEU GLY ALA SEQRES 14 A 327 GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL PRO SEQRES 15 A 327 ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG ILE SEQRES 16 A 327 TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL THR SEQRES 17 A 327 VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR ASP SEQRES 18 A 327 GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU LYS SEQRES 19 A 327 GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE ASP SEQRES 20 A 327 VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE ASP ALA SEQRES 21 A 327 ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU PHE SEQRES 22 A 327 SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL ILE SEQRES 23 A 327 GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR ASP SEQRES 24 A 327 SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP MET SEQRES 25 A 327 ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO GLN SEQRES 26 A 327 GLN GLY HET DJK A3021 23 HETNAM DJK N-[4-(3-BROMO-PHENYLAMINO)-QUINAZOLIN-6-YL]-ACRYLAMIDE FORMUL 2 DJK C17 H13 BR N4 O FORMUL 3 HOH *58(H2 O) HELIX 1 1 LYS A 708 PHE A 712 5 5 HELIX 2 2 PRO A 753 ALA A 767 1 15 HELIX 3 3 LEU A 798 LYS A 806 1 9 HELIX 4 4 GLY A 810 ARG A 831 1 22 HELIX 5 5 ALA A 839 ARG A 841 5 3 HELIX 6 6 PRO A 877 MET A 881 5 5 HELIX 7 7 ALA A 882 HIS A 888 1 7 HELIX 8 8 THR A 892 THR A 909 1 18 HELIX 9 9 PRO A 919 SER A 921 5 3 HELIX 10 10 GLU A 922 GLY A 930 1 9 HELIX 11 11 THR A 940 TRP A 951 1 12 HELIX 12 12 ASP A 954 ARG A 958 5 5 HELIX 13 13 LYS A 960 ALA A 972 1 13 HELIX 14 14 ASP A 974 LEU A 979 1 6 SHEET 1 AA 5 ILE A 715 SER A 720 0 SHEET 2 AA 5 THR A 725 TRP A 731 -1 O VAL A 726 N LEU A 718 SHEET 3 AA 5 ILE A 740 LYS A 745 -1 O ILE A 740 N TRP A 731 SHEET 4 AA 5 VAL A 786 GLN A 791 -1 O LEU A 788 N LYS A 745 SHEET 5 AA 5 LEU A 777 LEU A 782 -1 N LEU A 778 O ILE A 789 SHEET 1 AB 2 LEU A 833 VAL A 834 0 SHEET 2 AB 2 LYS A 860 LEU A 861 -1 O LYS A 860 N VAL A 834 SHEET 1 AC 2 VAL A 843 THR A 847 0 SHEET 2 AC 2 HIS A 850 ILE A 853 -1 O HIS A 850 N LYS A 846 LINK SG CYS A 797 C51 DJK A3021 1555 1555 1.83 SITE 1 AC1 12 ALA A 743 LYS A 745 GLU A 762 LEU A 788 SITE 2 AC1 12 THR A 790 GLN A 791 MET A 793 CYS A 797 SITE 3 AC1 12 ASP A 800 LEU A 844 HOH A2057 HOH A2058 CRYST1 145.876 145.876 145.876 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006855 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006855 0.00000