PDB Short entry for 2JCQ HEADER SUGAR BINDING PROTEIN 03-JAN-07 2JCQ TITLE THE HYALURONAN BINDING DOMAIN OF MURINE CD44 IN A TYPE A COMPLEX WITH TITLE 2 AN HA 8-MER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD44 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HYALURONAN BINDING DOMAIN, RESIDUES 23-174; COMPND 5 SYNONYM: PHAGOCYTIC GLYCOPROTEIN 1, PGP-1, HUTCH-I, EXTRACELLULAR COMPND 6 MATRIX RECEPTOR III, GP90 LYMPHOCYTE HOMING/ADHESION RECEPTOR, HERMES COMPND 7 ANTIGEN, HYALURONATE RECEPTOR, LYMPHOCYTE ANTIGEN LY-24, CD44; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: ENCODED RESIDUES 25-174, EQUIVALENT TO RESIDUES 1-151 COMPND 10 OF THE MATURE PROTEIN, WITH ADDITIONAL RESIDUES M, N ADDED AT THE N- COMPND 11 TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS SUGAR-BINDING PROTEIN, HYAURONAN, LINK-DOMAIN, PROTEOGLYCAN, BLOOD KEYWDS 2 GROUP ANTIGEN, LECTIN, ANTIGEN, MEMBRANE, RECEPTOR, SULFATION, KEYWDS 3 GLYCOPROTEIN, C-TYPE LECTIN, CELL ADHESION, EXTRACELLULAR MATRIX, KEYWDS 4 PYRROLIDONE CARBOXYLIC ACID, TRANSMEMBRANE, SUGAR- BINDING, KEYWDS 5 PHOSPHORYLATION, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BANERJI,A.J.WRIGHT,M.E.M.NOBLE,D.J.MAHONEY,I.D.CAMPBELL,A.J.DAY, AUTHOR 2 D.G.JACKSON REVDAT 8 13-DEC-23 2JCQ 1 HETSYN LINK REVDAT 7 29-JUL-20 2JCQ 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 24-AUG-16 2JCQ 1 COMPND SOURCE KEYWDS AUTHOR REVDAT 6 2 1 JRNL REMARK VERSN HET REVDAT 6 3 1 HETNAM HETSYN FORMUL LINK REVDAT 6 4 1 SITE HETATM ANISOU CONECT REVDAT 6 5 1 MASTER REVDAT 5 09-JUN-09 2JCQ 1 REMARK REVDAT 4 24-FEB-09 2JCQ 1 VERSN REVDAT 3 06-MAY-08 2JCQ 1 VERSN JRNL REVDAT 2 13-FEB-07 2JCQ 1 JRNL REVDAT 1 30-JAN-07 2JCQ 0 JRNL AUTH S.BANERJI,A.J.WRIGHT,M.E.M.NOBLE,D.J.MAHONEY,I.D.CAMPBELL, JRNL AUTH 2 A.J.DAY,D.G.JACKSON JRNL TITL STRUCTURES OF THE CD44-HYALURONAN COMPLEX PROVIDE INSIGHT JRNL TITL 2 INTO A FUNDAMENTAL CARBOHYDRATE-PROTEIN INTERACTION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 234 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 17293874 JRNL DOI 10.1038/NSMB1201 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 36568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1382 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1162 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1907 ; 1.774 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2710 ; 0.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 7.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;34.887 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 203 ;11.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 229 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1521 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 267 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 259 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1254 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 714 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 855 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1015 ; 1.718 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1311 ; 2.129 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 653 ; 3.200 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 596 ; 4.064 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 1699 REMARK 3 RESIDUE RANGE : A 1175 A 1181 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3240 -1.3110 2.8690 REMARK 3 T TENSOR REMARK 3 T11: -0.0352 T22: -0.0256 REMARK 3 T33: -0.0201 T12: -0.0049 REMARK 3 T13: 0.0002 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.7410 L22: 0.5171 REMARK 3 L33: 1.2897 L12: -0.0363 REMARK 3 L13: 0.1673 L23: -0.0496 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: -0.0019 S13: 0.0249 REMARK 3 S21: 0.0152 S22: -0.0150 S23: -0.0490 REMARK 3 S31: -0.0236 S32: 0.0404 S33: 0.0089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1290030983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 23.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 5.440 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.65 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UUH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CO-CRYSTALS OF THE CD44/HA8 COMPLEX REMARK 280 WERE PREPARED AFTER ADDITION OF HA8 (2MM FINAL CONCENTRATION) TO REMARK 280 THE 0.5MM PROTEIN SOLUTION FOLLOWED BY MIXING 1:1 WITH WELL REMARK 280 SOLUTIONS CONTAINING 25% (W/V) PEG 3350 AND 100MM NACL IN 100MM REMARK 280 HEPES BUFFERED AT EITHER PH 7.0 OR PH 8.0, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.02550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 23 REMARK 465 ASN A 24 REMARK 465 ALA A 175 REMARK 465 SER A 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 174 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H1 HOH A 2034 O HOH A 2161 1.06 REMARK 500 H VAL A 108 H2 HOH A 2091 1.10 REMARK 500 H2 HOH A 2053 H1 HOH A 2123 1.12 REMARK 500 H THR A 138 H2 HOH A 2128 1.15 REMARK 500 HG1 THR A 66 H2 HOH A 2054 1.19 REMARK 500 H VAL A 112 H1 HOH A 2092 1.24 REMARK 500 HE ARG A 159 H1 HOH A 2147 1.25 REMARK 500 H1 HOH A 2034 H2 HOH A 2161 1.29 REMARK 500 H HIS A 118 H1 HOH A 2109 1.29 REMARK 500 HZ3 LYS A 162 H1 HOH A 2130 1.31 REMARK 500 H HIS A 169 H1 HOH A 2040 1.33 REMARK 500 H ALA A 99 H1 HOH A 2083 1.34 REMARK 500 O HOH A 2018 H1 HOH A 2173 1.55 REMARK 500 H2 HOH A 2062 O HOH A 2130 1.59 REMARK 500 OE1 GLN A 25 OD1 ASP A 27 2.04 REMARK 500 O HOH A 2046 O HOH A 2111 2.06 REMARK 500 O HOH A 2034 O HOH A 2161 2.06 REMARK 500 O HOH A 2062 O HOH A 2130 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H2 HOH A 2026 H1 HOH A 2055 1655 0.99 REMARK 500 H2 HOH A 2003 H1 HOH A 2050 1655 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 12.35 -151.87 REMARK 500 GLU A 131 -134.78 -109.47 REMARK 500 LEU A 140 79.20 -118.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JCP RELATED DB: PDB REMARK 900 THE HYALURONAN BINDING DOMAIN OF MURINE CD44 REMARK 900 RELATED ID: 2JCR RELATED DB: PDB REMARK 900 THE HYALURONAN BINDING DOMAIN OF MURINE CD44 IN A TYPE B COMPLEX REMARK 900 WITH AN HA 8-MER DBREF 2JCQ A 23 24 PDB 2JCQ 2JCQ 23 24 DBREF 2JCQ A 25 176 UNP P15379 CD44_MOUSE 23 174 SEQRES 1 A 154 MET ASN GLN ILE ASP LEU ASN VAL THR CYS ARG TYR ALA SEQRES 2 A 154 GLY VAL PHE HIS VAL GLU LYS ASN GLY ARG TYR SER ILE SEQRES 3 A 154 SER ARG THR GLU ALA ALA ASP LEU CYS GLN ALA PHE ASN SEQRES 4 A 154 SER THR LEU PRO THR MET ASP GLN MET LYS LEU ALA LEU SEQRES 5 A 154 SER LYS GLY PHE GLU THR CYS ARG TYR GLY PHE ILE GLU SEQRES 6 A 154 GLY ASN VAL VAL ILE PRO ARG ILE HIS PRO ASN ALA ILE SEQRES 7 A 154 CYS ALA ALA ASN HIS THR GLY VAL TYR ILE LEU VAL THR SEQRES 8 A 154 SER ASN THR SER HIS TYR ASP THR TYR CYS PHE ASN ALA SEQRES 9 A 154 SER ALA PRO PRO GLU GLU ASP CYS THR SER VAL THR ASP SEQRES 10 A 154 LEU PRO ASN SER PHE ASP GLY PRO VAL THR ILE THR ILE SEQRES 11 A 154 VAL ASN ARG ASP GLY THR ARG TYR SER LYS LYS GLY GLU SEQRES 12 A 154 TYR ARG THR HIS GLN GLU ASP ILE ASP ALA SER HET NAG B 1 29 HET BDP B 2 19 HET NAG B 3 27 HET BDP B 4 19 HET NAG B 5 27 HET BDP B 6 19 HET NAG B 7 28 HET GOL A1174 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BDP 3(C6 H10 O7) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *175(H2 O) HELIX 1 1 SER A 49 PHE A 60 1 12 HELIX 2 2 THR A 66 LYS A 76 1 11 HELIX 3 3 HIS A 169 ILE A 173 5 5 SHEET 1 AA 8 GLY A 107 ILE A 110 0 SHEET 2 AA 8 VAL A 90 ARG A 94 -1 O ILE A 92 N TYR A 109 SHEET 3 AA 8 GLY A 84 PHE A 85 -1 O GLY A 84 N VAL A 91 SHEET 4 AA 8 ASP A 120 PHE A 124 1 O ASP A 120 N PHE A 85 SHEET 5 AA 8 VAL A 37 LYS A 42 -1 O PHE A 38 N CYS A 123 SHEET 6 AA 8 ILE A 26 VAL A 30 -1 O ASN A 29 N GLU A 41 SHEET 7 AA 8 PHE A 144 ASN A 154 1 O THR A 149 N ILE A 26 SHEET 8 AA 8 ARG A 159 GLU A 165 -1 O TYR A 160 N ILE A 152 SHEET 1 AB 2 ARG A 33 TYR A 34 0 SHEET 2 AB 2 GLU A 132 ASP A 133 -1 O ASP A 133 N ARG A 33 SSBOND 1 CYS A 32 CYS A 134 1555 1555 2.08 SSBOND 2 CYS A 57 CYS A 123 1555 1555 2.17 SSBOND 3 CYS A 81 CYS A 101 1555 1555 2.05 LINK O3 NAG B 1 C1 BDP B 2 1555 1555 1.45 LINK O4 BDP B 2 C1 NAG B 3 1555 1555 1.44 LINK O3 NAG B 3 C1 BDP B 4 1555 1555 1.44 LINK O4 BDP B 4 C1 NAG B 5 1555 1555 1.43 LINK O3 NAG B 5 C1 BDP B 6 1555 1555 1.44 LINK O4 BDP B 6 C1 NAG B 7 1555 1555 1.44 CRYST1 30.794 82.051 32.278 90.00 117.89 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032474 0.000000 0.017187 0.00000 SCALE2 0.000000 0.012188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035052 0.00000