PDB Short entry for 2JCS HEADER TRANSFERASE 03-JAN-07 2JCS TITLE ACTIVE SITE MUTANT OF DNK FROM D. MELANOGASTER WITH DTTP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYNUCLEOSIDE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-230; COMPND 5 SYNONYM: DEOXYRIBONUCLEOSIDE KINASE, DM-DNK, MULTISPECIFIC COMPND 6 DEOXYNUCLEOSIDE KINASE; COMPND 7 EC: 2.7.1.145; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS KINASE, TRANSFERASE, ATP-BINDING, DNA SYNTHESIS, NUCLEOTIDE- BINDING, KEYWDS 2 DEOXYRIBONUCLEOSIDE KINASE EXPDTA X-RAY DIFFRACTION AUTHOR L.EGEBLAD-WELIN,Y.SONNTAG,H.EKLUND,B.MUNCH-PETERSEN REVDAT 4 13-DEC-23 2JCS 1 LINK REVDAT 3 17-JAN-18 2JCS 1 REMARK REVDAT 2 24-FEB-09 2JCS 1 VERSN REVDAT 1 27-FEB-07 2JCS 0 JRNL AUTH L.EGEBLAD-WELIN,Y.SONNTAG,H.EKLUND,B.MUNCH-PETERSEN JRNL TITL FUNCTIONAL STUDIES OF ACTIVE-SITE MUTANTS FROM DROSOPHILA JRNL TITL 2 MELANOGASTER DEOXYRIBONUCLEOSIDE KINASE. INVESTIGATIONS OF JRNL TITL 3 THE PUTATIVE CATALYTIC GLUTAMATE- ARGININE PAIR AND OF JRNL TITL 4 RESIDUES RESPONSIBLE FOR SUBSTRATE SPECIFICITY. JRNL REF FEBS J. V. 274 1542 2007 JRNL REFN ISSN 1742-464X JRNL PMID 17302737 JRNL DOI 10.1111/J.1742-4658.2007.05701.X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : -2.56000 REMARK 3 B33 (A**2) : 3.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.564 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.474 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3432 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4654 ; 0.885 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 4.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2560 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1555 ; 0.158 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1982 ; 0.314 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3224 ; 0.581 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1450 ; 0.557 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1430 ; 0.960 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 12 A 164 1 REMARK 3 1 B 12 B 164 1 REMARK 3 2 A 166 A 193 1 REMARK 3 2 B 166 B 193 1 REMARK 3 3 A 202 A 209 1 REMARK 3 3 B 202 B 209 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1568 ; 0.01 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1568 ; 0.02 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1290030178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.087 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 32.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1OE0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M NAAC,0.1 M MES PH 6.5, 18% MPEG REMARK 280 2000, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.73350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 52 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 52 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 CYS A 7 REMARK 465 ALA A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 ASN A 210 REMARK 465 LEU A 211 REMARK 465 GLU A 212 REMARK 465 ASN A 213 REMARK 465 ILE A 214 REMARK 465 GLY A 215 REMARK 465 THR A 216 REMARK 465 GLU A 217 REMARK 465 TYR A 218 REMARK 465 GLN A 219 REMARK 465 ARG A 220 REMARK 465 SER A 221 REMARK 465 GLU A 222 REMARK 465 SER A 223 REMARK 465 SER A 224 REMARK 465 ILE A 225 REMARK 465 PHE A 226 REMARK 465 ASP A 227 REMARK 465 ALA A 228 REMARK 465 ILE A 229 REMARK 465 SER A 230 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 CYS B 7 REMARK 465 ALA B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 GLY B 11 REMARK 465 ASN B 210 REMARK 465 LEU B 211 REMARK 465 GLU B 212 REMARK 465 ASN B 213 REMARK 465 ILE B 214 REMARK 465 GLY B 215 REMARK 465 THR B 216 REMARK 465 GLU B 217 REMARK 465 TYR B 218 REMARK 465 GLN B 219 REMARK 465 ARG B 220 REMARK 465 SER B 221 REMARK 465 GLU B 222 REMARK 465 SER B 223 REMARK 465 SER B 224 REMARK 465 ILE B 225 REMARK 465 PHE B 226 REMARK 465 ASP B 227 REMARK 465 ALA B 228 REMARK 465 ILE B 229 REMARK 465 SER B 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 43 42.25 -99.65 REMARK 500 ASP A 52 68.63 39.62 REMARK 500 ARG A 105 173.87 67.43 REMARK 500 PRO A 197 88.03 -61.59 REMARK 500 TYR B 43 42.77 -99.05 REMARK 500 ASN B 59 83.62 -150.99 REMARK 500 ARG B 105 173.41 66.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1211 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 34 OG1 REMARK 620 2 ASP A 52 OD1 75.9 REMARK 620 3 GLU A 104 OE2 80.3 85.0 REMARK 620 4 TTP A1210 O1B 165.0 90.1 104.3 REMARK 620 5 TTP A1210 O3G 92.4 167.7 89.3 101.9 REMARK 620 6 TTP A1210 O3B 140.5 137.3 82.4 54.5 52.1 REMARK 620 7 HOH A2004 O 81.9 84.2 161.0 91.3 98.1 115.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1211 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 34 OG1 REMARK 620 2 ASP B 52 OD1 77.6 REMARK 620 3 GLU B 104 OE2 82.2 85.5 REMARK 620 4 TTP B1210 O1B 171.5 94.3 99.8 REMARK 620 5 TTP B1210 O3G 92.6 168.3 87.0 95.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP B1210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J90 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DROSOPHILA DEOXYRIBONUCLEOSIDE KINASE REMARK 900 RELATED ID: 1OE0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DROSOPHILA DEOXYRIBONUCLEOSIDE KINASE IN REMARK 900 COMPLEX WITH DTTP REMARK 900 RELATED ID: 1OT3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DROSOPHILA DEOXYRIBONUCLEOTIDE KINASECOMPLEXED REMARK 900 WITH THE SUBSTRATE DEOXYTHYMIDINE REMARK 900 RELATED ID: 1ZM7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF D. MELANOGASTER DEOXYRIBONUCLEOSIDEKINASE REMARK 900 MUTANT N64D IN COMPLEX WITH DTTP REMARK 900 RELATED ID: 1ZMX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF D. MELANOGASTER DEOXYRIBONUCLEOSIDEKINASE N64D REMARK 900 MUTANT IN COMPLEX WITH THYMIDINE DBREF 2JCS A 1 230 UNP Q9XZT6 DNK_DROME 1 230 DBREF 2JCS B 1 230 UNP Q9XZT6 DNK_DROME 1 230 SEQADV 2JCS ASP A 52 UNP Q9XZT6 GLU 52 ENGINEERED MUTATION SEQADV 2JCS ASP B 52 UNP Q9XZT6 GLU 52 ENGINEERED MUTATION SEQRES 1 A 230 MET ALA GLU ALA ALA SER CYS ALA ARG LYS GLY THR LYS SEQRES 2 A 230 TYR ALA GLU GLY THR GLN PRO PHE THR VAL LEU ILE GLU SEQRES 3 A 230 GLY ASN ILE GLY SER GLY LYS THR THR TYR LEU ASN HIS SEQRES 4 A 230 PHE GLU LYS TYR LYS ASN ASP ILE CYS LEU LEU THR ASP SEQRES 5 A 230 PRO VAL GLU LYS TRP ARG ASN VAL ASN GLY VAL ASN LEU SEQRES 6 A 230 LEU GLU LEU MET TYR LYS ASP PRO LYS LYS TRP ALA MET SEQRES 7 A 230 PRO PHE GLN SER TYR VAL THR LEU THR MET LEU GLN SER SEQRES 8 A 230 HIS THR ALA PRO THR ASN LYS LYS LEU LYS ILE MET GLU SEQRES 9 A 230 ARG SER ILE PHE SER ALA ARG TYR CYS PHE VAL GLU ASN SEQRES 10 A 230 MET ARG ARG ASN GLY SER LEU GLU GLN GLY MET TYR ASN SEQRES 11 A 230 THR LEU GLU GLU TRP TYR LYS PHE ILE GLU GLU SER ILE SEQRES 12 A 230 HIS VAL GLN ALA ASP LEU ILE ILE TYR LEU ARG THR SER SEQRES 13 A 230 PRO GLU VAL ALA TYR GLU ARG ILE ARG GLN ARG ALA ARG SEQRES 14 A 230 SER GLU GLU SER CYS VAL PRO LEU LYS TYR LEU GLN GLU SEQRES 15 A 230 LEU HIS GLU LEU HIS GLU ASP TRP LEU ILE HIS GLN ARG SEQRES 16 A 230 ARG PRO GLN SER CYS LYS VAL LEU VAL LEU ASP ALA ASP SEQRES 17 A 230 LEU ASN LEU GLU ASN ILE GLY THR GLU TYR GLN ARG SER SEQRES 18 A 230 GLU SER SER ILE PHE ASP ALA ILE SER SEQRES 1 B 230 MET ALA GLU ALA ALA SER CYS ALA ARG LYS GLY THR LYS SEQRES 2 B 230 TYR ALA GLU GLY THR GLN PRO PHE THR VAL LEU ILE GLU SEQRES 3 B 230 GLY ASN ILE GLY SER GLY LYS THR THR TYR LEU ASN HIS SEQRES 4 B 230 PHE GLU LYS TYR LYS ASN ASP ILE CYS LEU LEU THR ASP SEQRES 5 B 230 PRO VAL GLU LYS TRP ARG ASN VAL ASN GLY VAL ASN LEU SEQRES 6 B 230 LEU GLU LEU MET TYR LYS ASP PRO LYS LYS TRP ALA MET SEQRES 7 B 230 PRO PHE GLN SER TYR VAL THR LEU THR MET LEU GLN SER SEQRES 8 B 230 HIS THR ALA PRO THR ASN LYS LYS LEU LYS ILE MET GLU SEQRES 9 B 230 ARG SER ILE PHE SER ALA ARG TYR CYS PHE VAL GLU ASN SEQRES 10 B 230 MET ARG ARG ASN GLY SER LEU GLU GLN GLY MET TYR ASN SEQRES 11 B 230 THR LEU GLU GLU TRP TYR LYS PHE ILE GLU GLU SER ILE SEQRES 12 B 230 HIS VAL GLN ALA ASP LEU ILE ILE TYR LEU ARG THR SER SEQRES 13 B 230 PRO GLU VAL ALA TYR GLU ARG ILE ARG GLN ARG ALA ARG SEQRES 14 B 230 SER GLU GLU SER CYS VAL PRO LEU LYS TYR LEU GLN GLU SEQRES 15 B 230 LEU HIS GLU LEU HIS GLU ASP TRP LEU ILE HIS GLN ARG SEQRES 16 B 230 ARG PRO GLN SER CYS LYS VAL LEU VAL LEU ASP ALA ASP SEQRES 17 B 230 LEU ASN LEU GLU ASN ILE GLY THR GLU TYR GLN ARG SER SEQRES 18 B 230 GLU SER SER ILE PHE ASP ALA ILE SER HET TTP A1210 29 HET MG A1211 1 HET TTP B1210 29 HET MG B1211 1 HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 TTP 2(C10 H17 N2 O14 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *142(H2 O) HELIX 1 1 GLY A 32 ASN A 38 1 7 HELIX 2 2 HIS A 39 LYS A 44 5 6 HELIX 3 3 PRO A 53 ARG A 58 1 6 HELIX 4 4 ASN A 64 ASP A 72 1 9 HELIX 5 5 ASP A 72 THR A 93 1 22 HELIX 6 6 SER A 106 CYS A 113 1 8 HELIX 7 7 CYS A 113 ASN A 121 1 9 HELIX 8 8 GLU A 125 ILE A 143 1 19 HELIX 9 9 SER A 156 ALA A 168 1 13 HELIX 10 10 ARG A 169 SER A 173 5 5 HELIX 11 11 PRO A 176 ILE A 192 1 17 HELIX 12 12 GLY B 32 ASN B 38 1 7 HELIX 13 13 HIS B 39 LYS B 44 5 6 HELIX 14 14 PRO B 53 ARG B 58 1 6 HELIX 15 15 ASN B 64 ASP B 72 1 9 HELIX 16 16 ASP B 72 THR B 93 1 22 HELIX 17 17 SER B 106 CYS B 113 1 8 HELIX 18 18 CYS B 113 ASN B 121 1 9 HELIX 19 19 GLU B 125 ILE B 143 1 19 HELIX 20 20 SER B 156 ALA B 168 1 13 HELIX 21 21 ARG B 169 SER B 173 5 5 HELIX 22 22 PRO B 176 ILE B 192 1 17 SHEET 1 AA 5 ILE A 47 LEU A 50 0 SHEET 2 AA 5 LEU A 100 GLU A 104 1 O LEU A 100 N CYS A 48 SHEET 3 AA 5 PHE A 21 GLU A 26 1 O PHE A 21 N LYS A 101 SHEET 4 AA 5 LEU A 149 ARG A 154 1 O LEU A 149 N LEU A 24 SHEET 5 AA 5 LYS A 201 ASP A 206 1 O LYS A 201 N ILE A 150 SHEET 1 BA 5 ILE B 47 LEU B 50 0 SHEET 2 BA 5 LEU B 100 GLU B 104 1 O LEU B 100 N CYS B 48 SHEET 3 BA 5 PHE B 21 GLU B 26 1 O PHE B 21 N LYS B 101 SHEET 4 BA 5 LEU B 149 ARG B 154 1 O LEU B 149 N LEU B 24 SHEET 5 BA 5 LYS B 201 ASP B 206 1 O LYS B 201 N ILE B 150 LINK OG1 THR A 34 MG MG A1211 1555 1555 2.14 LINK OD1 ASP A 52 MG MG A1211 1555 1555 2.35 LINK OE2 GLU A 104 MG MG A1211 1555 1555 2.33 LINK O1B TTP A1210 MG MG A1211 1555 1555 1.82 LINK O3G TTP A1210 MG MG A1211 1555 1555 1.97 LINK O3B TTP A1210 MG MG A1211 1555 1555 3.14 LINK MG MG A1211 O HOH A2004 1555 1555 2.19 LINK OG1 THR B 34 MG MG B1211 1555 1555 2.05 LINK OD1 ASP B 52 MG MG B1211 1555 1555 2.29 LINK OE2 GLU B 104 MG MG B1211 1555 1555 2.31 LINK O1B TTP B1210 MG MG B1211 1555 1555 1.71 LINK O3G TTP B1210 MG MG B1211 1555 1555 2.04 SITE 1 AC1 5 THR A 34 ASP A 52 GLU A 104 TTP A1210 SITE 2 AC1 5 HOH A2004 SITE 1 AC2 4 THR B 34 ASP B 52 GLU B 104 TTP B1210 SITE 1 AC3 28 ASN A 28 ILE A 29 GLY A 30 SER A 31 SITE 2 AC3 28 GLY A 32 LYS A 33 THR A 34 ASP A 52 SITE 3 AC3 28 VAL A 54 TRP A 57 LEU A 66 MET A 69 SITE 4 AC3 28 TYR A 70 PHE A 80 GLN A 81 VAL A 84 SITE 5 AC3 28 GLU A 104 ARG A 105 ALA A 110 PHE A 114 SITE 6 AC3 28 ARG A 167 ARG A 169 GLU A 172 MG A1211 SITE 7 AC3 28 HOH A2004 HOH A2005 HOH A2058 HOH A2070 SITE 1 AC4 26 ILE B 29 GLY B 30 SER B 31 GLY B 32 SITE 2 AC4 26 LYS B 33 THR B 34 ASP B 52 VAL B 54 SITE 3 AC4 26 TRP B 57 LEU B 66 MET B 69 TYR B 70 SITE 4 AC4 26 PHE B 80 GLN B 81 VAL B 84 GLU B 104 SITE 5 AC4 26 ARG B 105 ALA B 110 PHE B 114 ARG B 167 SITE 6 AC4 26 ARG B 169 GLU B 172 MG B1211 HOH B2064 SITE 7 AC4 26 HOH B2071 HOH B2072 CRYST1 33.523 119.467 68.900 90.00 92.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029830 0.000000 0.001261 0.00000 SCALE2 0.000000 0.008371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014527 0.00000 MTRIX1 1 -1.000000 0.001845 0.003595 30.19000 1 MTRIX2 1 -0.001330 -0.996400 0.138500 30.22000 1 MTRIX3 1 0.003816 0.138400 0.990400 -2.16200 1