PDB Short entry for 2JOD HEADER SIGNALING PROTEIN 07-MAR-07 2JOD TITLE PAC1-RSHORT N-TERMINAL EC DOMAIN PACAP(6-38) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE TYPE I COMPND 3 RECEPTOR; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 22-143; COMPND 6 SYNONYM: PACAP TYPE I RECEPTOR, PACAP-R-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SEQUENCE DATABASE RESIDUES, 137-169; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADCYAP1R1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ADCYAP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PEPTIDE COMPLEX, SIGNALING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR E.T.OLEJNICZAK,C.SUN,D.SONG,R.A.DAVIS-TABER,L.W.BARRETT,V.E.SCOTT, AUTHOR 2 P.L.RICHARDSON,A.PEREDA-LOPEZ,M.E.UCHIC,L.R.SOLOMON,M.R.LAKE, AUTHOR 3 K.A.WALTER,P.J.HAJDUK REVDAT 5 20-DEC-23 2JOD 1 REMARK REVDAT 4 20-OCT-21 2JOD 1 SEQADV REVDAT 3 05-FEB-20 2JOD 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JOD 1 VERSN REVDAT 1 22-MAY-07 2JOD 0 JRNL AUTH C.SUN,D.SONG,R.A.DAVIS-TABER,L.W.BARRETT,V.E.SCOTT, JRNL AUTH 2 P.L.RICHARDSON,A.PEREDA-LOPEZ,M.E.UCHIC,L.R.SOLOMON, JRNL AUTH 3 M.R.LAKE,K.A.WALTER,P.J.HAJDUK,E.T.OLEJNICZAK JRNL TITL SOLUTION STRUCTURE AND MUTATIONAL ANALYSIS OF PITUITARY JRNL TITL 2 ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE BINDING TO THE JRNL TITL 3 EXTRACELLULAR DOMAIN OF PAC1-RS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 7875 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17470806 JRNL DOI 10.1073/PNAS.0611397104 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100085. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PAC1-R N-TERMINAL EC DOMAIN, 0.5 REMARK 210 MM PACAP (6-38), 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 22 77.67 60.21 REMARK 500 PHE A 27 45.38 37.18 REMARK 500 LYS A 28 -144.43 51.78 REMARK 500 MET A 45 -142.44 42.33 REMARK 500 ASN A 48 -142.39 64.39 REMARK 500 ASP A 49 74.25 -104.68 REMARK 500 SER A 50 -53.47 -161.21 REMARK 500 PRO A 52 -175.42 -68.57 REMARK 500 ASP A 59 -164.47 -107.39 REMARK 500 ILE A 61 -22.72 -167.09 REMARK 500 GLU A 79 96.99 67.03 REMARK 500 PHE A 84 -86.76 -112.75 REMARK 500 ASP A 89 90.75 66.35 REMARK 500 PHE A 106 104.30 -164.04 REMARK 500 TYR A 109 -108.85 -87.42 REMARK 500 ASP A 111 81.07 63.91 REMARK 500 ALA A 112 -80.49 -67.60 REMARK 500 TYR A 118 -97.71 -77.94 REMARK 500 THR B 7 58.75 -92.60 REMARK 500 ALA B 18 -77.22 -93.56 REMARK 500 LEU B 27 41.03 -88.82 REMARK 500 LYS B 32 -40.42 -156.66 REMARK 500 ARG B 34 -116.84 -105.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15166 RELATED DB: BMRB DBREF 2JOD A 22 122 UNP P41586 PACR_HUMAN 22 143 DBREF 2JOD B 6 38 UNP P18509 PACA_HUMAN 137 169 SEQADV 2JOD MET A 17 UNP P41586 CLONING ARTIFACT SEQADV 2JOD GLY A 18 UNP P41586 CLONING ARTIFACT SEQADV 2JOD SER A 19 UNP P41586 CLONING ARTIFACT SEQADV 2JOD MET A 20 UNP P41586 CLONING ARTIFACT SEQADV 2JOD ALA A 21 UNP P41586 CLONING ARTIFACT SEQADV 2JOD GLY A 25 UNP P41586 CYS 25 ENGINEERED MUTATION SEQADV 2JOD A UNP P41586 VAL 89 DELETION SEQADV 2JOD A UNP P41586 TRP 90 DELETION SEQADV 2JOD A UNP P41586 GLU 91 DELETION SEQADV 2JOD A UNP P41586 THR 92 DELETION SEQADV 2JOD A UNP P41586 GLU 93 DELETION SEQADV 2JOD A UNP P41586 THR 94 DELETION SEQADV 2JOD A UNP P41586 ILE 95 DELETION SEQADV 2JOD A UNP P41586 GLY 96 DELETION SEQADV 2JOD A UNP P41586 GLU 97 DELETION SEQADV 2JOD A UNP P41586 SER 98 DELETION SEQADV 2JOD A UNP P41586 ASP 99 DELETION SEQADV 2JOD A UNP P41586 PHE 100 DELETION SEQADV 2JOD A UNP P41586 GLY 101 DELETION SEQADV 2JOD A UNP P41586 ASP 102 DELETION SEQADV 2JOD A UNP P41586 SER 103 DELETION SEQADV 2JOD A UNP P41586 ASN 104 DELETION SEQADV 2JOD A UNP P41586 SER 105 DELETION SEQADV 2JOD A UNP P41586 LEU 106 DELETION SEQADV 2JOD A UNP P41586 ASP 107 DELETION SEQADV 2JOD A UNP P41586 LEU 108 DELETION SEQADV 2JOD A UNP P41586 SER 109 DELETION SEQRES 1 A 106 MET GLY SER MET ALA HIS SER ASP GLY ILE PHE LYS LYS SEQRES 2 A 106 GLU GLN ALA MET CYS LEU GLU LYS ILE GLN ARG ALA ASN SEQRES 3 A 106 GLU LEU MET GLY PHE ASN ASP SER SER PRO GLY CYS PRO SEQRES 4 A 106 GLY MET TRP ASP ASN ILE THR CYS TRP LYS PRO ALA HIS SEQRES 5 A 106 VAL GLY GLU MET VAL LEU VAL SER CYS PRO GLU LEU PHE SEQRES 6 A 106 ARG ILE PHE ASN PRO ASP GLN ASP MET GLY VAL VAL SER SEQRES 7 A 106 ARG ASN CYS THR GLU ASP GLY TRP SER GLU PRO PHE PRO SEQRES 8 A 106 HIS TYR PHE ASP ALA CYS GLY PHE ASP GLU TYR GLU SER SEQRES 9 A 106 GLU THR SEQRES 1 B 33 PHE THR ASP SER TYR SER ARG TYR ARG LYS GLN MET ALA SEQRES 2 B 33 VAL LYS LYS TYR LEU ALA ALA VAL LEU GLY LYS ARG TYR SEQRES 3 B 33 LYS GLN ARG VAL LYS ASN LYS HELIX 1 1 SER A 23 PHE A 27 5 5 HELIX 2 2 LYS A 29 MET A 45 1 17 HELIX 3 3 TYR B 10 LYS B 15 1 6 HELIX 4 4 LYS B 21 ARG B 30 1 10 SHEET 1 A 2 MET A 57 TRP A 58 0 SHEET 2 A 2 CYS A 63 TRP A 64 -1 O TRP A 64 N MET A 57 SHEET 1 B 2 VAL A 73 VAL A 75 0 SHEET 2 B 2 VAL A 93 ARG A 95 -1 O ARG A 95 N VAL A 73 SSBOND 1 CYS A 34 CYS A 63 1555 1555 2.03 SSBOND 2 CYS A 54 CYS A 97 1555 1555 2.03 SSBOND 3 CYS A 77 CYS A 113 1555 1555 2.03 CISPEP 1 PHE A 106 PRO A 107 0 1.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000