PDB Short entry for 2JUH HEADER NUCLEAR PROTEIN 27-AUG-07 2JUH TITLE SOLUTION STRUCTURE OF DNA BINDING DOMAIN OF NGTRF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERE BINDING PROTEIN TBP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, RESIDUES 561-681; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA GLUTINOSA; SOURCE 3 ORGANISM_COMMON: TOBACCO; SOURCE 4 ORGANISM_TAXID: 35889; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS HELIX, NUCLEUS, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.LEE,S.KO REVDAT 4 14-JUN-23 2JUH 1 REMARK REVDAT 3 19-FEB-20 2JUH 1 SOURCE REMARK REVDAT 2 24-FEB-09 2JUH 1 VERSN REVDAT 1 16-SEP-08 2JUH 0 JRNL AUTH N.LEE,S.KO JRNL TITL SOLUTION STRUCTURE OF DNA BINDING DOMAIN OF NGTRF1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.5 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JUH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100305. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] NGTRF1, 1 MM REMARK 210 [U-100% 13C; U-100% 15N] NGTRF1, REMARK 210 25MM SODIUM PHOSPHATE, 100MM REMARK 210 NACL, PH 7 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.2.5, NMRDRAW 2.4, REMARK 210 NMRPIPE 2.3, SPARKY 3.114, REMARK 210 AUTOASSIGN 3.1, TALOS 1.0, REMARK 210 MOLMOL 2.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 562 125.83 -175.32 REMARK 500 1 LEU A 571 -64.72 -127.92 REMARK 500 1 GLN A 573 145.03 -174.50 REMARK 500 1 ARG A 575 146.64 -174.05 REMARK 500 1 ASN A 610 66.81 -101.59 REMARK 500 1 SER A 631 68.79 170.28 REMARK 500 1 ILE A 632 -75.84 -130.57 REMARK 500 1 GLN A 661 -74.49 -100.40 REMARK 500 1 LYS A 663 119.89 -166.41 REMARK 500 1 GLN A 664 -52.00 -136.35 REMARK 500 1 HIS A 665 102.76 -174.81 REMARK 500 1 PRO A 668 84.69 -69.80 REMARK 500 1 ALA A 674 148.18 -174.30 REMARK 500 2 VAL A 562 124.88 -173.13 REMARK 500 2 ASN A 563 143.05 -170.57 REMARK 500 2 ARG A 568 140.94 -174.02 REMARK 500 2 ARG A 574 -177.43 -178.60 REMARK 500 2 PRO A 579 93.86 -69.70 REMARK 500 2 ALA A 607 -70.84 -86.92 REMARK 500 2 ASN A 610 73.89 -102.44 REMARK 500 2 ASP A 612 -72.53 -89.07 REMARK 500 2 SER A 631 69.06 173.20 REMARK 500 2 ILE A 632 -75.95 -129.73 REMARK 500 2 LYS A 663 138.45 -176.33 REMARK 500 2 PRO A 668 -174.51 -69.81 REMARK 500 2 ILE A 671 135.53 -175.26 REMARK 500 2 GLN A 677 129.45 -172.42 REMARK 500 3 VAL A 562 126.16 -175.93 REMARK 500 3 PRO A 579 75.28 -69.74 REMARK 500 3 ARG A 599 78.13 -119.75 REMARK 500 3 ASP A 612 -63.97 -97.63 REMARK 500 3 SER A 631 68.76 173.61 REMARK 500 3 ILE A 632 -74.33 -128.52 REMARK 500 3 GLN A 660 -65.77 -93.67 REMARK 500 3 PRO A 668 -171.14 -69.76 REMARK 500 3 ALA A 674 -176.22 -175.91 REMARK 500 4 VAL A 562 44.18 37.01 REMARK 500 4 ARG A 575 173.54 -54.58 REMARK 500 4 ARG A 577 -71.31 -82.06 REMARK 500 4 ASN A 610 40.13 -95.31 REMARK 500 4 ALA A 611 -168.21 -64.09 REMARK 500 4 HIS A 613 -39.32 -165.35 REMARK 500 4 SER A 631 68.52 173.26 REMARK 500 4 ILE A 632 -76.43 -130.28 REMARK 500 4 GLN A 664 -72.08 -96.37 REMARK 500 5 ARG A 575 -75.32 -145.71 REMARK 500 5 PRO A 579 82.10 -69.78 REMARK 500 5 ARG A 599 71.74 -105.68 REMARK 500 5 ASN A 610 79.45 -119.85 REMARK 500 5 SER A 631 70.64 173.32 REMARK 500 REMARK 500 THIS ENTRY HAS 230 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15444 RELATED DB: BMRB DBREF 2JUH A 561 681 UNP Q84ZU4 Q84ZU4_NICGU 561 681 SEQRES 1 A 121 PRO VAL ASN GLN LYS SER LYS ARG SER GLU LEU SER GLN SEQRES 2 A 121 ARG ARG ILE ARG ARG PRO PHE SER VAL ALA GLU VAL GLU SEQRES 3 A 121 ALA LEU VAL GLU ALA VAL GLU HIS LEU GLY THR GLY ARG SEQRES 4 A 121 TRP ARG ASP VAL LYS MET ARG ALA PHE ASP ASN ALA ASP SEQRES 5 A 121 HIS ARG THR TYR VAL ASP LEU LYS ASP LYS TRP LYS THR SEQRES 6 A 121 LEU VAL HIS THR ALA SER ILE ALA PRO GLN GLN ARG ARG SEQRES 7 A 121 GLY GLU PRO VAL PRO GLN ASP LEU LEU ASP ARG VAL LEU SEQRES 8 A 121 ALA ALA HIS ALA TYR TRP SER GLN GLN GLN GLY LYS GLN SEQRES 9 A 121 HIS VAL GLU PRO LEU LYS ILE LEU ASP ALA LYS ALA GLN SEQRES 10 A 121 LYS VAL GLY ALA HELIX 1 1 SER A 581 GLY A 596 1 16 HELIX 2 2 ARG A 599 PHE A 608 1 10 HELIX 3 3 TYR A 616 ILE A 632 1 17 HELIX 4 4 PRO A 643 GLY A 662 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000