PDB Short entry for 2JUP HEADER TRANSCRIPTION 01-SEP-07 2JUP TITLE FBP28WW2 DOMAIN IN COMPLEX WITH THE PPLIPPPP PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION REGULATOR 1; COMPND 3 CHAIN: W; COMPND 4 FRAGMENT: WW 2 DOMAIN, SEQUENCE DATABASE RESIDUES 430-466; COMPND 5 SYNONYM: TATA BOX-BINDING PROTEIN- ASSOCIATED FACTOR 2S, COMPND 6 TRANSCRIPTION FACTOR CA150, P144, FORMIN- BINDING PROTEIN 28, FBP 28; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: FORMIN-1; COMPND 10 CHAIN: P; COMPND 11 FRAGMENT: SEQUENCE DATABASE RESIDUES, 881-888; COMPND 12 SYNONYM: LIMB DEFORMITY PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TCERG1, TAF2S; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETM30; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: THE AUTHORS STATE THAT THE PEPTIDE WAS CHEMICALLY SOURCE 15 SYNTHESIZED AND THE SEQUENCE CORRESPONDS TO THE MOUSE FORMIN SOURCE 16 PROTEIN. KEYWDS FBP28WW DOMAIN, PPLIPPPP PEPTIDE, ALTERNATIVE SPLICING, COILED COIL, KEYWDS 2 NUCLEUS, POLYMORPHISM, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION KEYWDS 3 REGULATION, ACTIN-BINDING, CELL JUNCTION, CYTOPLASM, MEMBRANE, KEYWDS 4 PHOSPHORYLATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.RAMIREZ-ESPAIN,L.RUIZ,P.MARTIN-MALPARTIDA,H.OSCHKINAT,M.J.MACIAS REVDAT 3 19-FEB-20 2JUP 1 SOURCE REMARK SEQADV REVDAT 2 24-FEB-09 2JUP 1 VERSN REVDAT 1 06-NOV-07 2JUP 0 JRNL AUTH X.RAMIREZ-ESPAIN,L.RUIZ,P.MARTIN-MALPARTIDA,H.OSCHKINAT, JRNL AUTH 2 M.J.MACIAS JRNL TITL STRUCTURAL CHARACTERIZATION OF A NEW BINDING MOTIF AND A JRNL TITL 2 NOVEL BINDING MODE IN GROUP 2 WW DOMAINS JRNL REF J.MOL.BIOL. V. 373 1255 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17915251 JRNL DOI 10.1016/J.JMB.2007.08.052 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UXNMR, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (UXNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JUP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000100313. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 0.100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM FBP28WW2+LIGAND, 90% REMARK 210 H2O/10% D2O; 1 MM FBP28WW2+ REMARK 210 LIGAND, 100% D2O; 1 MM [U-100% REMARK 210 15N] FBP28WW2+LIGAND, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, CNS, NMRPIPE, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: W, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR W 19 HG2 PRO P 106 1.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN W 23 53.59 -95.26 REMARK 500 1 ARG W 24 -89.70 -75.84 REMARK 500 1 LEU W 26 97.22 76.28 REMARK 500 1 PRO W 33 151.30 -48.76 REMARK 500 2 ALA W 2 97.20 -174.78 REMARK 500 2 THR W 3 138.27 76.37 REMARK 500 2 ALA W 4 131.38 73.35 REMARK 500 2 ARG W 24 -87.03 -59.72 REMARK 500 2 LEU W 26 98.72 70.97 REMARK 500 2 TRP W 30 -68.17 -90.52 REMARK 500 2 PRO W 33 160.57 -47.17 REMARK 500 3 ALA W 2 83.68 68.83 REMARK 500 3 ASN W 22 103.52 -57.22 REMARK 500 3 ARG W 24 -73.45 -67.29 REMARK 500 3 LEU W 26 84.50 63.06 REMARK 500 3 GLU W 31 -167.69 -106.94 REMARK 500 4 ARG W 24 -79.44 -67.07 REMARK 500 4 LEU W 26 88.74 73.86 REMARK 500 4 TRP W 30 -71.78 -69.44 REMARK 500 4 GLU W 31 -168.12 -108.97 REMARK 500 4 PRO W 33 171.44 -52.43 REMARK 500 5 ARG W 24 -89.78 -60.12 REMARK 500 5 LEU W 26 80.48 65.69 REMARK 500 5 TRP W 30 -70.37 -72.15 REMARK 500 5 LYS W 32 109.22 -38.32 REMARK 500 5 PRO W 33 157.82 -48.10 REMARK 500 6 ALA W 2 -30.76 -149.57 REMARK 500 6 ARG W 24 -81.46 -66.01 REMARK 500 6 LEU W 26 90.04 69.25 REMARK 500 6 TRP W 30 -80.86 -75.31 REMARK 500 6 LYS W 32 99.77 -17.66 REMARK 500 7 ARG W 24 -84.28 -69.36 REMARK 500 7 TRP W 30 -78.51 -73.82 REMARK 500 7 GLU W 31 -167.37 -100.07 REMARK 500 7 LYS W 32 118.63 -39.89 REMARK 500 8 ARG W 24 -75.55 -60.27 REMARK 500 8 LEU W 26 67.05 65.93 REMARK 500 9 ARG W 24 -87.50 -61.54 REMARK 500 9 LEU W 26 73.11 67.14 REMARK 500 9 GLU W 31 -168.40 -108.81 REMARK 500 9 PRO W 33 -178.77 -55.22 REMARK 500 10 ARG W 24 -85.63 -67.92 REMARK 500 10 LEU W 26 91.25 69.54 REMARK 500 10 PRO W 33 167.32 -48.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RLY RELATED DB: PDB REMARK 900 RELATED ID: 2RM0 RELATED DB: PDB REMARK 900 RELATED ID: 15453 RELATED DB: BMRB DBREF 2JUP W 1 37 UNP Q8CGF7 TCRG1_MOUSE 430 466 DBREF 2JUP P 102 109 UNP Q05860 FMN1_MOUSE 881 888 SEQADV 2JUP GLY P 101 UNP Q05860 EXPRESSION TAG SEQRES 1 W 37 GLY ALA THR ALA VAL SER GLU TRP THR GLU TYR LYS THR SEQRES 2 W 37 ALA ASP GLY LYS THR TYR TYR TYR ASN ASN ARG THR LEU SEQRES 3 W 37 GLU SER THR TRP GLU LYS PRO GLN GLU LEU LYS SEQRES 1 P 9 GLY PRO PRO LEU ILE PRO PRO PRO PRO SHEET 1 A 2 TYR W 20 ASN W 22 0 SHEET 2 A 2 GLU W 27 THR W 29 -1 O GLU W 27 N ASN W 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000