PDB Short entry for 2JV3 HEADER TRANSCRIPTION 11-SEP-07 2JV3 TITLE ETS-1 PNT DOMAIN (29-138) NMR STRUCTURE ENSEMBLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ETS1 PROTO-ONCOGENE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ETS-1 PNT DOMAIN (RESIDUES 29-138); COMPND 5 SYNONYM: E26 AVIAN LEUKEMIA ONCOGENE 1, 5' DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ETS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS ETS-1 POINTED (PNT) DOMAIN, MAP KINASE PHOSPHORYLATION SITE, ALPHA- KEYWDS 2 HELICAL BUNDLE, TRANSCRIPTION FACTOR, DNA-BINDING, NUCLEUS, KEYWDS 3 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR G.M.LEE,H.KANG,M.SCHAERPF,C.M.SLUPSKY,M.P.LAWRENCE REVDAT 3 16-MAR-22 2JV3 1 REMARK REVDAT 2 24-FEB-09 2JV3 1 VERSN REVDAT 1 16-OCT-07 2JV3 0 SPRSDE 16-OCT-07 2JV3 1BQV JRNL AUTH H.KANG,M.L.NELSON,G.M.LEE,B.J.GRAVES,L.P.MCINTOSH JRNL TITL ETS-1 PNT DOMAIN (29-138) NMR STRUCTURE ENSEMBLE JRNL REF TO BE PUBLISHED REF NOW ASSIGNED AS JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.M.SLUPSKY,L.N.GENTILE,L.W.DONALDSON,C.D.MACKERETH, REMARK 1 AUTH 2 J.J.SEIDEL,B.J.GRAVES,L.P.MCINTOSH REMARK 1 TITL STRUCTURE OF THE ETS-1 POINTED DOMAIN AND MITOGEN-ACTIVATED REMARK 1 TITL 2 PROTEIN KINASE PHOSPHORYLATION SITE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 95 12129 1998 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 9770451 REMARK 1 DOI 10.1073/PNAS.95.21.12129 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 10000 STEPS @ 10000K, TIME STEP = REMARK 3 0.003FS, 10000K -> 1000 K IN 5000 STEPS (FIRST STAGE); 1000 K -> REMARK 3 50K IN 4000 STEPS (SECOND STAGE). FINAL 25 STRUCTURES REFINED IN REMARK 3 ARIA WATER BOX. REMARK 4 REMARK 4 2JV3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100327. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 200-300 UM [U-100% 13C; U-100% REMARK 210 15N] ETSPNT, SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O; 200-300 UM [U- REMARK 210 100% 15N] ETSPNT, SODIUM REMARK 210 PHOSPHATE, PF1 PHAGE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CCC-TOCSY-NNH; 3D HCC-TOCSY- REMARK 210 NNH; 3D HCCH-TOCSY; SIMULTANEOUS REMARK 210 3D 15N-13C-NOESY; SIMULTANEOUS REMARK 210 3D 15N-13C-NOESY (METHYL); 3D 1H- REMARK 210 13C NOESY(AROMATICS); 2D 1H-15N REMARK 210 IPAP HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRPIPE, SPARKY 3.11, REMARK 210 MOLMOL 2K2, TALOS 2003.027.13.05, REMARK 210 PROCHECKNMR 3.5.4 REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING, MD/SA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS SOLVED WITH A COMBINATION OF NOESY AND REMARK 210 RDC DATA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG LEU A 49 HE2 PHE A 88 1.25 REMARK 500 HA LYS A 134 HB VAL A 137 1.28 REMARK 500 O LEU A 90 H GLY A 92 1.54 REMARK 500 OE1 GLU A 59 HH21 ARG A 62 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 36 -94.28 -118.80 REMARK 500 1 SER A 41 -69.20 -93.52 REMARK 500 1 ARG A 70 7.77 -66.90 REMARK 500 1 LYS A 91 59.54 -57.49 REMARK 500 1 ASP A 136 25.91 -142.18 REMARK 500 2 GLU A 30 -47.84 74.06 REMARK 500 2 CYS A 31 -60.83 73.39 REMARK 500 2 LEU A 36 134.95 164.53 REMARK 500 2 PRO A 39 88.20 -53.82 REMARK 500 2 SER A 40 -62.92 -126.90 REMARK 500 2 SER A 41 -71.80 -91.87 REMARK 500 2 ARG A 70 9.96 -63.04 REMARK 500 2 GLN A 71 19.10 -141.47 REMARK 500 3 SER A 41 -69.49 -92.91 REMARK 500 3 LYS A 91 51.85 -52.30 REMARK 500 4 CYS A 31 -69.54 -133.98 REMARK 500 4 SER A 40 -65.38 -134.90 REMARK 500 4 SER A 41 -67.52 -93.31 REMARK 500 4 ARG A 70 7.54 -62.05 REMARK 500 4 GLN A 71 16.20 -140.15 REMARK 500 4 LYS A 91 22.37 48.86 REMARK 500 4 ASP A 136 35.38 -142.17 REMARK 500 5 SER A 41 -67.03 -91.12 REMARK 500 5 LYS A 91 26.35 45.25 REMARK 500 5 ASP A 136 60.60 -165.00 REMARK 500 6 SER A 40 -62.35 -108.60 REMARK 500 6 SER A 41 -70.55 -89.37 REMARK 500 6 ARG A 70 0.79 -58.95 REMARK 500 6 GLN A 71 19.21 -145.92 REMARK 500 6 LYS A 91 65.39 -45.26 REMARK 500 6 ASP A 136 36.85 -141.43 REMARK 500 7 PRO A 39 64.02 -65.14 REMARK 500 7 SER A 40 -62.83 -95.48 REMARK 500 7 SER A 41 -68.83 -92.37 REMARK 500 7 ARG A 70 6.87 -65.81 REMARK 500 7 GLN A 71 18.03 -145.70 REMARK 500 7 LYS A 91 62.30 -59.75 REMARK 500 8 ASP A 33 89.93 -169.83 REMARK 500 8 PRO A 39 62.78 -67.35 REMARK 500 8 SER A 41 -70.89 -86.65 REMARK 500 8 ARG A 70 8.95 -62.65 REMARK 500 8 LYS A 91 34.48 39.08 REMARK 500 9 CYS A 31 179.35 68.18 REMARK 500 9 LEU A 36 54.66 -114.42 REMARK 500 9 SER A 40 -62.26 -90.28 REMARK 500 9 SER A 41 -70.67 -90.74 REMARK 500 9 ARG A 70 9.88 -67.34 REMARK 500 9 LYS A 91 64.11 -59.33 REMARK 500 9 ASP A 136 -50.23 -127.12 REMARK 500 10 GLU A 30 -134.38 54.44 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4205 RELATED DB: BMRB REMARK 900 THE CHEMICAL SHIFTS FOR THIS PROTEIN, ACQUIRED AT 500MHZ REMARK 900 RELATED ID: 1BQV RELATED DB: PDB REMARK 900 THE ORIGINAL NMR ENSEMBLE COORDINATES, TO BE REPLACED BY THE REMARK 900 CURRENT ENSEMBLE. DBREF 2JV3 A 29 138 UNP Q540Q5 Q540Q5_MOUSE 29 138 SEQRES 1 A 110 MET GLU CYS ALA ASP VAL PRO LEU LEU THR PRO SER SER SEQRES 2 A 110 LYS GLU MET MET SER GLN ALA LEU LYS ALA THR PHE SER SEQRES 3 A 110 GLY PHE THR LYS GLU GLN GLN ARG LEU GLY ILE PRO LYS SEQRES 4 A 110 ASP PRO ARG GLN TRP THR GLU THR HIS VAL ARG ASP TRP SEQRES 5 A 110 VAL MET TRP ALA VAL ASN GLU PHE SER LEU LYS GLY VAL SEQRES 6 A 110 ASP PHE GLN LYS PHE CYS MET SER GLY ALA ALA LEU CYS SEQRES 7 A 110 ALA LEU GLY LYS GLU CYS PHE LEU GLU LEU ALA PRO ASP SEQRES 8 A 110 PHE VAL GLY ASP ILE LEU TRP GLU HIS LEU GLU ILE LEU SEQRES 9 A 110 GLN LYS GLU ASP VAL LYS HELIX 1 1 LYS A 42 PHE A 53 1 12 HELIX 2 2 PHE A 53 LEU A 63 1 11 HELIX 3 3 THR A 73 SER A 89 1 17 HELIX 4 4 SER A 101 LEU A 108 1 8 HELIX 5 5 LEU A 108 ALA A 117 1 10 HELIX 6 6 PRO A 118 GLU A 135 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000