PDB Short entry for 2JX8 HEADER TRANSCRIPTION 09-NOV-07 2JX8 TITLE SOLUTION STRUCTURE OF HPCIF1 WW DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORYLATED CTD-INTERACTING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WW DOMAIN; COMPND 5 SYNONYM: HPCIF1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS PROTEIN FRAGMENT, WW DOMAIN, TRIPLE-STANDED BETA-SHEET, ALPHA-HELIX, KEYWDS 2 NUCLEUS, PHOSPHORYLATION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.KOUNO,Y.IWAMOTO,Y.HIROSE,T.AIZAWA,M.DEMURA,K.KAWANO,Y.OHKUMA, AUTHOR 2 M.MIZUGUCHI REVDAT 4 14-JUN-23 2JX8 1 REMARK REVDAT 3 26-FEB-20 2JX8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JX8 1 VERSN REVDAT 1 11-NOV-08 2JX8 0 JRNL AUTH T.KOUNO,Y.IWAMOTO,Y.HIROSE,T.AIZAWA,M.DEMURA,K.KAWANO, JRNL AUTH 2 Y.OHKUMA,M.MIZUGUCHI JRNL TITL 1H, 13C, AND 15N RESONANCE ASSIGNMENTS OF HPCIF1 WW DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JX8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000100404. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM [U-15N] HPCIF1 WW DOMAIN, REMARK 210 20MM SODIUM PHOSPHATE, 20MM REMARK 210 SODIUM CHLORIDE, 1MM [U-2H] DTT, REMARK 210 1MM SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.6MM [U-13C; U-15N] HPCIF1 WW REMARK 210 DOMAIN, 20MM SODIUM PHOSPHATE, REMARK 210 20MM SODIUM CHLORIDE, 1MM [U-2H] REMARK 210 DTT, 1MM SODIUM AZIDE, 100% D2O; REMARK 210 0.6MM HPCIF1 WW DOMAIN, 20MM REMARK 210 SODIUM PHOSPHATE, 20MM SODIUM REMARK 210 CHLORIDE, 1MM [U-2H] DTT, 1MM REMARK 210 SODIUM AZIDE, 100% D2O; 0.6MM [U- REMARK 210 13C; U-15N] HPCIF1 WW DOMAIN, REMARK 210 20MM SODIUM PHOSPHATE, 20MM REMARK 210 SODIUM CHLORIDE, 1MM [U-2H] DTT, REMARK 210 1MM SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D HNHA; 3D 1H REMARK 210 -13C NOESY; 2D 1H-1H NOESY; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D C(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D HNCO; 3D HCCH- REMARK 210 COSY; 3D HCCH-TOCSY; 2D 1H-1H REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 22 -148.30 -171.11 REMARK 500 1 ASN A 29 15.83 56.57 REMARK 500 1 MET A 35 127.16 -39.45 REMARK 500 1 PRO A 36 -167.88 -79.61 REMARK 500 1 HIS A 41 -154.33 -66.63 REMARK 500 2 TYR A 22 -148.26 -169.18 REMARK 500 2 ASN A 29 19.17 58.51 REMARK 500 2 PRO A 36 -165.12 -79.97 REMARK 500 2 GLN A 40 -173.63 -59.61 REMARK 500 2 ASP A 42 -165.03 -122.01 REMARK 500 2 VAL A 43 75.11 -101.91 REMARK 500 2 SER A 45 -90.90 -88.47 REMARK 500 3 TYR A 22 -154.74 -173.34 REMARK 500 3 HIS A 41 77.64 -151.09 REMARK 500 3 ASP A 46 106.45 -166.92 REMARK 500 4 TYR A 22 -153.60 -174.51 REMARK 500 4 ASN A 29 19.04 58.38 REMARK 500 4 HIS A 41 75.78 175.90 REMARK 500 4 ASP A 42 -162.25 -104.92 REMARK 500 4 SER A 45 72.43 -155.94 REMARK 500 4 ASP A 46 83.43 -179.46 REMARK 500 5 TYR A 22 -152.77 -175.70 REMARK 500 5 ASN A 29 15.96 56.90 REMARK 500 5 ASP A 42 -169.22 -100.34 REMARK 500 6 ALA A 8 -72.23 -64.98 REMARK 500 6 TYR A 22 -146.44 -166.66 REMARK 500 6 ASN A 29 16.85 54.82 REMARK 500 6 SER A 31 85.16 -150.12 REMARK 500 6 HIS A 41 75.61 -152.71 REMARK 500 6 ASP A 42 -165.57 -118.72 REMARK 500 6 ILE A 44 -179.85 -58.03 REMARK 500 7 TYR A 22 -142.35 -170.66 REMARK 500 7 ASN A 29 14.98 57.30 REMARK 500 7 MET A 35 129.58 -39.33 REMARK 500 7 LEU A 38 -163.20 -163.03 REMARK 500 7 HIS A 41 -178.57 -56.70 REMARK 500 7 ASP A 42 -158.91 -161.95 REMARK 500 7 ASP A 46 79.41 59.12 REMARK 500 8 TYR A 22 -144.57 -169.29 REMARK 500 8 ASN A 29 18.98 58.46 REMARK 500 8 PRO A 36 -166.51 -79.65 REMARK 500 8 GLN A 40 -171.94 -59.09 REMARK 500 8 ASP A 42 -162.56 -102.52 REMARK 500 9 TYR A 22 -151.62 -177.15 REMARK 500 9 ASN A 29 16.49 55.81 REMARK 500 9 MET A 35 120.21 -39.05 REMARK 500 9 ASP A 42 -156.57 -124.24 REMARK 500 9 SER A 45 49.99 -96.97 REMARK 500 9 ASP A 46 159.14 56.64 REMARK 500 10 TYR A 22 -150.46 -166.49 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.23 SIDE CHAIN REMARK 500 1 ARG A 17 0.32 SIDE CHAIN REMARK 500 1 ARG A 20 0.26 SIDE CHAIN REMARK 500 1 ARG A 26 0.32 SIDE CHAIN REMARK 500 2 ARG A 16 0.21 SIDE CHAIN REMARK 500 2 ARG A 17 0.28 SIDE CHAIN REMARK 500 2 ARG A 20 0.32 SIDE CHAIN REMARK 500 2 ARG A 26 0.31 SIDE CHAIN REMARK 500 3 ARG A 16 0.26 SIDE CHAIN REMARK 500 3 ARG A 17 0.17 SIDE CHAIN REMARK 500 3 ARG A 20 0.24 SIDE CHAIN REMARK 500 3 ARG A 26 0.26 SIDE CHAIN REMARK 500 4 ARG A 16 0.30 SIDE CHAIN REMARK 500 4 ARG A 17 0.30 SIDE CHAIN REMARK 500 4 ARG A 20 0.28 SIDE CHAIN REMARK 500 4 ARG A 26 0.28 SIDE CHAIN REMARK 500 5 ARG A 16 0.16 SIDE CHAIN REMARK 500 5 ARG A 17 0.32 SIDE CHAIN REMARK 500 5 ARG A 20 0.17 SIDE CHAIN REMARK 500 5 ARG A 26 0.25 SIDE CHAIN REMARK 500 6 ARG A 16 0.32 SIDE CHAIN REMARK 500 6 ARG A 17 0.16 SIDE CHAIN REMARK 500 6 ARG A 20 0.17 SIDE CHAIN REMARK 500 6 ARG A 26 0.20 SIDE CHAIN REMARK 500 7 ARG A 16 0.30 SIDE CHAIN REMARK 500 7 ARG A 17 0.25 SIDE CHAIN REMARK 500 7 ARG A 20 0.17 SIDE CHAIN REMARK 500 7 ARG A 26 0.08 SIDE CHAIN REMARK 500 8 ARG A 16 0.27 SIDE CHAIN REMARK 500 8 ARG A 17 0.14 SIDE CHAIN REMARK 500 8 ARG A 20 0.23 SIDE CHAIN REMARK 500 8 ARG A 26 0.32 SIDE CHAIN REMARK 500 9 ARG A 17 0.32 SIDE CHAIN REMARK 500 9 ARG A 20 0.27 SIDE CHAIN REMARK 500 9 ARG A 26 0.31 SIDE CHAIN REMARK 500 10 ARG A 16 0.09 SIDE CHAIN REMARK 500 10 ARG A 17 0.28 SIDE CHAIN REMARK 500 10 ARG A 20 0.16 SIDE CHAIN REMARK 500 10 ARG A 26 0.31 SIDE CHAIN REMARK 500 11 ARG A 16 0.09 SIDE CHAIN REMARK 500 11 ARG A 17 0.30 SIDE CHAIN REMARK 500 11 ARG A 20 0.19 SIDE CHAIN REMARK 500 11 ARG A 26 0.19 SIDE CHAIN REMARK 500 12 ARG A 16 0.16 SIDE CHAIN REMARK 500 12 ARG A 17 0.23 SIDE CHAIN REMARK 500 12 ARG A 20 0.14 SIDE CHAIN REMARK 500 13 ARG A 16 0.25 SIDE CHAIN REMARK 500 13 ARG A 20 0.13 SIDE CHAIN REMARK 500 13 ARG A 26 0.29 SIDE CHAIN REMARK 500 14 ARG A 16 0.13 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 75 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15550 RELATED DB: BMRB DBREF 2JX8 A 1 47 UNP Q9H4Z3 PCIF1_HUMAN 40 86 SEQADV 2JX8 GLY A -4 UNP Q9H4Z3 EXPRESSION TAG SEQADV 2JX8 PRO A -3 UNP Q9H4Z3 EXPRESSION TAG SEQADV 2JX8 LEU A -2 UNP Q9H4Z3 EXPRESSION TAG SEQADV 2JX8 GLY A -1 UNP Q9H4Z3 EXPRESSION TAG SEQADV 2JX8 SER A 0 UNP Q9H4Z3 EXPRESSION TAG SEQRES 1 A 52 GLY PRO LEU GLY SER LEU PRO GLU GLU LEU VAL HIS ALA SEQRES 2 A 52 GLY TRP GLU LYS CYS TRP SER ARG ARG GLU ASN ARG PRO SEQRES 3 A 52 TYR TYR PHE ASN ARG PHE THR ASN GLN SER LEU TRP GLU SEQRES 4 A 52 MET PRO VAL LEU GLY GLN HIS ASP VAL ILE SER ASP PRO HELIX 1 1 PRO A 2 GLY A 9 1 8 SHEET 1 A 3 LYS A 12 SER A 15 0 SHEET 2 A 3 ARG A 20 ASN A 25 -1 O ARG A 20 N SER A 15 SHEET 3 A 3 GLN A 30 LEU A 32 -1 O LEU A 32 N TYR A 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000