PDB Short entry for 2JZY HEADER TRANSCRIPTION 22-JAN-08 2JZY TITLE SOLUTION STRUCTURE OF C-TERMINAL EFFECTOR DOMAIN OF PUTATIVE TWO- TITLE 2 COMPONENT-SYSTEM RESPONSE REGULATOR INVOLVED IN COPPER RESISTANCE TITLE 3 FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN PCOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 126-228; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: PCOR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET22B(+) KEYWDS TWO-COMPONENT-SYSTEM RESPONSE REGULATOR, EFFECTOR DOMAIN, DNA- KEYWDS 2 BINDING, PHOSPHOPROTEIN, PLASMID, TRANSCRIPTION, TRANSCRIPTION KEYWDS 3 REGULATION, TWO-COMPONENT REGULATORY SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.HUNG,P.FANG,C.CHANG,S.TSAI,T.HUANG REVDAT 3 01-MAY-24 2JZY 1 REMARK REVDAT 2 19-FEB-20 2JZY 1 REMARK SEQADV REVDAT 1 27-JAN-09 2JZY 0 JRNL AUTH K.HUNG,P.FANG,Y.LIN,C.CHANG,S.TSAI,T.HUANG JRNL TITL SOLUTION STRUCTURE OF C-TERMINAL EFFECTOR DOMAIN OF PUTATIVE JRNL TITL 2 TWO-COMPONENT-SYSTEM RESPONSE REGULATOR INVOLVED IN COPPER JRNL TITL 3 RESISTANCE FROM KLEBSIELLA PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100501. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150MM NACL AND 150MM GLU/ARG. REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] C-TERMINAL REMARK 210 DOMAIN OF TCS RESPONSE REGULATOR, REMARK 210 20 MM TRIS, 150 MM NACL, 150 MM REMARK 210 GLU, 150 MM ARG, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 HNCO; 3D HCACO; 3D 1H-13C NOESY; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 105 REMARK 465 GLU A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 4 29.27 -142.78 REMARK 500 1 VAL A 5 129.71 -170.48 REMARK 500 1 ASP A 10 58.77 -156.36 REMARK 500 1 VAL A 57 -75.44 -124.20 REMARK 500 1 TRP A 58 -75.29 -81.72 REMARK 500 1 ASN A 59 174.41 179.98 REMARK 500 1 ILE A 80 -42.94 -151.20 REMARK 500 1 PHE A 84 -75.71 -54.05 REMARK 500 1 PRO A 86 -179.04 -69.72 REMARK 500 1 LYS A 87 90.18 -66.89 REMARK 500 1 ARG A 93 99.73 -57.61 REMARK 500 1 ALA A 95 -74.60 -144.42 REMARK 500 2 ASP A 10 58.93 -154.41 REMARK 500 2 VAL A 57 -75.01 -124.03 REMARK 500 2 TRP A 58 -75.35 -81.90 REMARK 500 2 ASN A 59 174.55 179.74 REMARK 500 2 ILE A 80 -44.80 -146.71 REMARK 500 2 ASP A 83 38.15 -147.31 REMARK 500 2 PHE A 84 -69.71 -130.68 REMARK 500 2 LYS A 87 107.03 -57.82 REMARK 500 2 ALA A 95 -70.76 -141.96 REMARK 500 3 THR A 4 30.41 -140.40 REMARK 500 3 ILE A 8 -169.44 -126.99 REMARK 500 3 ASP A 10 59.35 -159.33 REMARK 500 3 VAL A 57 -75.92 -124.41 REMARK 500 3 TRP A 58 -75.52 -84.02 REMARK 500 3 ASP A 65 91.68 -65.52 REMARK 500 3 ILE A 80 -45.97 -153.09 REMARK 500 3 PHE A 84 -41.66 -138.03 REMARK 500 3 PRO A 86 -170.82 -69.78 REMARK 500 3 ARG A 93 102.81 -52.59 REMARK 500 3 ALA A 95 -75.86 -144.00 REMARK 500 3 GLU A 100 131.23 -174.58 REMARK 500 3 ILE A 101 -177.06 -68.66 REMARK 500 4 THR A 4 28.64 -142.14 REMARK 500 4 ASP A 10 57.89 -154.33 REMARK 500 4 VAL A 57 -75.48 -124.16 REMARK 500 4 TRP A 58 -75.20 -81.43 REMARK 500 4 ASP A 65 88.14 -67.71 REMARK 500 4 PHE A 84 -70.90 -122.80 REMARK 500 4 LYS A 87 94.12 -62.03 REMARK 500 4 ARG A 93 100.00 -56.53 REMARK 500 4 ALA A 95 -75.83 -146.52 REMARK 500 5 ASP A 10 58.91 -155.42 REMARK 500 5 VAL A 57 -76.35 -128.88 REMARK 500 5 TRP A 58 -75.19 -80.32 REMARK 500 5 ILE A 80 -44.83 -151.59 REMARK 500 5 PHE A 84 -75.01 -126.62 REMARK 500 5 PRO A 86 -177.13 -69.71 REMARK 500 5 LYS A 87 99.04 -67.21 REMARK 500 REMARK 500 THIS ENTRY HAS 206 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15632 RELATED DB: BMRB DBREF 2JZY A 2 104 UNP Q6U5P9 Q6U5P9_KLEPN 126 228 SEQADV 2JZY MET A 1 UNP Q6U5P9 INITIATING METHIONINE SEQADV 2JZY LEU A 105 UNP Q6U5P9 EXPRESSION TAG SEQADV 2JZY GLU A 106 UNP Q6U5P9 EXPRESSION TAG SEQADV 2JZY HIS A 107 UNP Q6U5P9 EXPRESSION TAG SEQADV 2JZY HIS A 108 UNP Q6U5P9 EXPRESSION TAG SEQADV 2JZY HIS A 109 UNP Q6U5P9 EXPRESSION TAG SEQADV 2JZY HIS A 110 UNP Q6U5P9 EXPRESSION TAG SEQADV 2JZY HIS A 111 UNP Q6U5P9 EXPRESSION TAG SEQADV 2JZY HIS A 112 UNP Q6U5P9 EXPRESSION TAG SEQRES 1 A 112 MET ALA ALA THR VAL CYS THR ILE ALA ASP MET THR VAL SEQRES 2 A 112 ASP MET VAL ARG ARG THR VAL ILE ARG SER GLY LYS LYS SEQRES 3 A 112 ILE HIS LEU THR GLY LYS GLU TYR VAL LEU LEU GLU LEU SEQRES 4 A 112 LEU LEU GLN ARG THR GLY GLU VAL LEU PRO ARG SER LEU SEQRES 5 A 112 ILE SER SER LEU VAL TRP ASN MET ASN PHE ASP SER ASP SEQRES 6 A 112 THR ASN VAL ILE ASP VAL ALA VAL ARG ARG LEU ARG SER SEQRES 7 A 112 LYS ILE ASP ASP ASP PHE GLU PRO LYS LEU ILE HIS THR SEQRES 8 A 112 VAL ARG GLY ALA GLY TYR VAL LEU GLU ILE ARG GLU GLU SEQRES 9 A 112 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 30 ARG A 43 1 14 HELIX 2 2 PRO A 49 TRP A 58 1 10 HELIX 3 3 ASN A 67 SER A 78 1 12 SHEET 1 A 4 CYS A 6 ILE A 8 0 SHEET 2 A 4 MET A 11 VAL A 13 -1 O VAL A 13 N CYS A 6 SHEET 3 A 4 VAL A 20 ARG A 22 -1 O ILE A 21 N THR A 12 SHEET 4 A 4 LYS A 25 LYS A 26 -1 O LYS A 25 N ARG A 22 SHEET 1 B 2 ILE A 89 HIS A 90 0 SHEET 2 B 2 VAL A 98 LEU A 99 -1 O VAL A 98 N HIS A 90 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000