PDB Short entry for 2K0P HEADER PROTEIN BINDING 11-FEB-08 2K0P TITLE DETERMINATION OF A PROTEIN STRUCTURE IN THE SOLID STATE FROM NMR TITLE 2 CHEMICAL SHIFTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GB1; COMPND 5 SYNONYM: IGG-BINDING PROTEIN G; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP. GROUP G; SOURCE 3 GENE: SPG; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SOLID-STATE, CHEMICAL SHIFT RESTRAINTS, GB1, CELL WALL, IGG-BINDING KEYWDS 2 PROTEIN, PEPTIDOGLYCAN-ANCHOR, SECRETED, PROTEIN BINDING EXPDTA SOLID-STATE NMR AUTHOR P.ROBUSTELLI,A.CAVALLI,X.SALVATELLA,M.VENDRUSCOLO REVDAT 2 20-OCT-21 2K0P 1 REMARK SEQADV REVDAT 1 03-MAR-09 2K0P 0 JRNL AUTH P.ROBUSTELLI,A.CAVALLI,M.VENDRUSCOLO JRNL TITL DETERMINATION OF PROTEIN STRUCTURES IN THE SOLID STATE FROM JRNL TITL 2 NMR CHEMICAL SHIFTS. JRNL REF STRUCTURE V. 16 1764 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 19081052 JRNL DOI 10.1016/J.STR.2008.10.016 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.H.ZHOU,J.J.SHEA,A.J.NIEUWKOOP,W.T.FRANKS,B.J.WYLIE, REMARK 1 AUTH 2 C.MULLEN,D.SANDOZ,C.M.RIENSTRA REMARK 1 TITL SOLID-STATE PROTEIN-STRUCTURE DETERMINATION WITH REMARK 1 TITL 2 PROTON-DETECTED TRIPLE-RESONANCE 3D MAGIC-ANGLE-SPINNING NMR REMARK 1 TITL 3 SPECTROSCOPY. REMARK 1 REF ANGEW.CHEM.INT.ED.ENGL. V. 46 8380 2007 REMARK 1 REFN ISSN 1433-7851 REMARK 1 PMID 17907259 REMARK 1 DOI 10.1002/ANIE.200702905 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.H.ZHOU,G.SHAH,M.CORMOS,C.MULLEN,D.SANDOZ,C.M.RIENSTRA REMARK 1 TITL PROTON-DETECTED SOLID-STATE NMR SPECTROSCOPY OF FULLY REMARK 1 TITL 2 PROTONATED PROTEINS AT 40 KHZ MAGIC-ANGLE SPINNING. REMARK 1 REF J.AM.CHEM.SOC. V. 129 11791 2007 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 17725352 REMARK 1 DOI 10.1021/JA073462M REMARK 1 REFERENCE 3 REMARK 1 AUTH A.CAVALLI,X.SALVATELLA,C.M.DOBSON,M.VENDRUSCOLO REMARK 1 TITL PROTEIN STRUCTURE DETERMINATION FROM NMR CHEMICAL SHIFTS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 104 9615 2007 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 17535901 REMARK 1 DOI 10.1073/PNAS.0610313104 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ALMOST 1.0.0, ALMOST 1.0.0 REMARK 3 AUTHORS : CAVALLI, A. ET AL. (ALMOST), CAVALLI, A. ET AL. REMARK 3 (ALMOST) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE SELECTION AND REFINEMENT WERE REMARK 3 PERFORMED ACCORDING TO CHESHIRE PROTOCOL FOR CALCULATION OF REMARK 3 STRUCTURES FROM NMR CHEMICAL SHIFTS (CAVALLI ET AL., 2007, PNAS, REMARK 3 104, 9615-9620) REMARK 4 REMARK 4 2K0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000100528. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10 MG/ML [U-100% 13C; U-100% REMARK 210 15N] GB1, 0.5 V/V METHYL PENTANE REMARK 210 DIOL, 0.25 V/V ISOPROPANOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D CC DARR MIXING; 2D N(CA)CX; REMARK 210 2D N(CO)CX; 3D NCACX; 3D NCOCX; REMARK 210 3D CAN(COCX); 2D CC SPC5 DQ REMARK 210 MIXING REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INFINITY PLUS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MD/MC HYBRID REFINMENT AGAINST REMARK 210 TARGET FUCTION WEIGHTED BY REMARK 210 CHEMICAL SHIFT ACCURACY AND A REMARK 210 MOLECULAR MECHANICS FORCE FIELD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: FOR EXPERIMENTAL DATA SEE BMRB ENTRY 15156 REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 33 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -84.66 51.43 REMARK 500 VAL A 21 -63.26 66.29 REMARK 500 ALA A 23 -57.27 -7.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 3 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JU6 RELATED DB: PDB REMARK 900 SOLID-STATE NMR STRUCTURE DBREF 2K0P A 2 56 UNP P06654 SPG1_STRSG 228 282 SEQADV 2K0P MET A 1 UNP P06654 INITIATING METHIONINE SEQADV 2K0P GLN A 2 UNP P06654 THR 228 ENGINEERED MUTATION SEQRES 1 A 56 MET GLN TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 A 56 GLY GLU THR THR THR GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 A 56 GLU LYS VAL PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 A 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 A 56 THR VAL THR GLU HELIX 1 1 ASP A 22 GLY A 38 1 17 SHEET 1 A 4 LEU A 12 THR A 18 0 SHEET 2 A 4 TYR A 3 GLY A 9 -1 N LEU A 7 O GLY A 14 SHEET 3 A 4 THR A 51 THR A 55 1 O VAL A 54 N ILE A 6 SHEET 4 A 4 GLU A 42 ASP A 46 -1 N GLU A 42 O THR A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000