PDB Short entry for 2K3G HEADER SIGNALING PROTEIN 07-MAY-08 2K3G TITLE NMR STRUCTURE ANALYSIS OF A BMP RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN RECEPTOR TYPE-1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (UNP RESIDUES 51-152); COMPND 5 SYNONYM: SERINE/THREONINE-PROTEIN KINASE RECEPTOR R5, SKR5, ACTIVIN COMPND 6 RECEPTOR-LIKE KINASE 3, ALK-3, CD292 ANTIGEN; COMPND 7 EC: 2.7.11.30; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 GENE: BMPR1A, ACVRLK3, ALK3; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET32A KEYWDS BMP, RECEPTOR, TGF-BETA SUPERFAMILY, ATP-BINDING, DISEASE MUTATION, KEYWDS 2 GLYCOPROTEIN, KINASE, MAGNESIUM, MANGANESE, MEMBRANE, METAL-BINDING, KEYWDS 3 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, POLYMORPHISM, SERINE/THREONINE- KEYWDS 4 PROTEIN KINASE, TRANSFERASE, TRANSMEMBRANE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR J.KLAGES,A.KOTZSCH,T.MUELLER,H.KESSLER REVDAT 2 20-OCT-21 2K3G 1 REMARK SEQADV REVDAT 1 16-DEC-08 2K3G 0 JRNL AUTH J.KLAGES,A.KOTZSCH,M.COLES,W.SEBALD,J.NICKEL,T.MULLER, JRNL AUTH 2 H.KESSLER JRNL TITL THE SOLUTION STRUCTURE OF BMPR-IA REVEALS A LOCAL JRNL TITL 2 DISORDER-TO-ORDER TRANSITION UPON BMP-2 BINDING. JRNL REF BIOCHEMISTRY V. 47 11930 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18937504 JRNL DOI 10.1021/BI801059J REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.9.4A, X-PLOR NIH 2.9.4A REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STANDARD PROTOCOLS WERE USED REMARK 4 REMARK 4 2K3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000100627. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-99% 15N] BONE REMARK 210 MORPHOGENETIC PROTEIN RECEPTOR REMARK 210 TYPE IA, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 0.2 W/V SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 0.5 MM [U-94% REMARK 210 13C; U-98% 15N] BONE REMARK 210 MORPHOGENETIC PROTEIN RECEPTOR REMARK 210 TYPE IA, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 0.2 W/V SODIUM AZIDE, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D HNCACB; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HNHB; 3D REMARK 210 HCCH-COSY; 3D 1H-15N-15N NOESY; REMARK 210 3D 1H-15N-13C NIOESY; 3D HN(CA) REMARK 210 HA; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, SPARKY, TALOS, REMARK 210 PROCHECKNMR, AQUA, WHAT IF REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 30 79.80 -155.34 REMARK 500 1 PHE A 35 49.32 -152.89 REMARK 500 1 ASN A 50 41.58 38.44 REMARK 500 1 GLU A 81 -47.22 -133.17 REMARK 500 1 PHE A 85 68.10 -155.62 REMARK 500 1 LYS A 92 33.90 -155.67 REMARK 500 1 GLN A 94 53.64 -119.81 REMARK 500 2 GLU A 30 78.84 -155.49 REMARK 500 2 PHE A 35 52.86 -157.55 REMARK 500 2 ASN A 50 43.61 37.52 REMARK 500 2 GLU A 81 -48.40 -140.97 REMARK 500 2 PHE A 85 30.00 -155.72 REMARK 500 2 LYS A 92 50.08 -155.67 REMARK 500 2 GLN A 94 -169.23 -64.56 REMARK 500 2 ARG A 103 48.67 -104.97 REMARK 500 3 GLU A 30 78.81 -155.40 REMARK 500 3 PHE A 35 53.37 -158.17 REMARK 500 3 ASN A 50 43.07 37.76 REMARK 500 3 GLU A 81 26.44 -155.02 REMARK 500 3 PHE A 85 76.69 -155.64 REMARK 500 3 CYS A 87 38.26 -140.19 REMARK 500 3 LYS A 92 36.38 -155.77 REMARK 500 3 GLN A 94 -168.84 -65.00 REMARK 500 3 ARG A 103 52.51 -106.35 REMARK 500 4 GLU A 30 47.20 -90.47 REMARK 500 4 THR A 32 51.67 -108.90 REMARK 500 4 PHE A 35 53.58 -158.28 REMARK 500 4 ASN A 50 43.29 38.70 REMARK 500 4 CYS A 87 62.85 -155.19 REMARK 500 4 LYS A 92 43.86 -155.41 REMARK 500 4 GLN A 94 67.16 -107.72 REMARK 500 4 ARG A 103 47.38 -106.98 REMARK 500 4 ASP A 125 -55.94 -155.38 REMARK 500 5 GLU A 30 47.13 -90.16 REMARK 500 5 PHE A 35 47.52 -150.17 REMARK 500 5 LEU A 36 114.38 -160.69 REMARK 500 5 ASN A 50 42.91 37.78 REMARK 500 5 GLU A 81 -47.89 -140.03 REMARK 500 5 PHE A 85 31.19 -155.78 REMARK 500 5 LYS A 92 45.07 -155.81 REMARK 500 5 ARG A 103 48.76 -103.73 REMARK 500 5 ILE A 120 51.67 -91.44 REMARK 500 6 GLU A 30 46.85 -90.36 REMARK 500 6 PHE A 35 50.99 -156.07 REMARK 500 6 ASN A 50 42.79 38.74 REMARK 500 6 GLU A 81 -47.02 -131.25 REMARK 500 6 PHE A 85 75.21 -155.50 REMARK 500 6 CYS A 87 36.53 -140.54 REMARK 500 6 LYS A 92 55.27 -155.46 REMARK 500 6 GLN A 94 -169.16 -64.56 REMARK 500 REMARK 500 THIS ENTRY HAS 186 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K3G A 28 129 UNP P36894 BMR1A_HUMAN 51 152 SEQADV 2K3G GLY A 28 UNP P36894 ALA 51 ENGINEERED MUTATION SEQRES 1 A 102 GLY PRO GLU ASP THR LEU PRO PHE LEU LYS CYS TYR CYS SEQRES 2 A 102 SER GLY HIS CYS PRO ASP ASP ALA ILE ASN ASN THR CYS SEQRES 3 A 102 ILE THR ASN GLY HIS CYS PHE ALA ILE ILE GLU GLU ASP SEQRES 4 A 102 ASP GLN GLY GLU THR THR LEU ALA SER GLY CYS MET LYS SEQRES 5 A 102 TYR GLU GLY SER ASP PHE GLN CYS LYS ASP SER PRO LYS SEQRES 6 A 102 ALA GLN LEU ARG ARG THR ILE GLU CYS CYS ARG THR ASN SEQRES 7 A 102 LEU CYS ASN GLN TYR LEU GLN PRO THR LEU PRO PRO VAL SEQRES 8 A 102 VAL ILE GLY PRO PHE PHE ASP GLY SER ILE ARG SHEET 1 A 2 LYS A 37 TYR A 39 0 SHEET 2 A 2 THR A 52 ILE A 54 -1 O CYS A 53 N CYS A 38 SHEET 1 B 3 THR A 71 MET A 78 0 SHEET 2 B 3 HIS A 58 GLU A 65 -1 N ILE A 62 O ALA A 74 SHEET 3 B 3 ARG A 97 CYS A 102 -1 O CYS A 102 N CYS A 59 SSBOND 1 CYS A 38 CYS A 59 1555 1555 1.99 SSBOND 2 CYS A 40 CYS A 44 1555 1555 2.02 SSBOND 3 CYS A 53 CYS A 77 1555 1555 2.03 SSBOND 4 CYS A 87 CYS A 101 1555 1555 2.02 SSBOND 5 CYS A 102 CYS A 107 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000