PDB Short entry for 2K4T HEADER MEMBRANE PROTEIN,APOPTOSIS 17-JUN-08 2K4T TITLE SOLUTION STRUCTURE OF HUMAN VDAC-1 IN LDAO MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDAC-1, HVDAC1, OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN COMPND 5 1, PLASMALEMMAL PORIN, PORIN 31HL, PORIN 31HM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VDAC1, VDAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS MEMBRANE PROTEIN, ACETYLATION, APOPTOSIS, HOST-VIRUS INTERACTION, ION KEYWDS 2 TRANSPORT, MEMBRANE, MITOCHONDRION, OUTER MEMBRANE, PHOSPHOPROTEIN, KEYWDS 3 PORIN, TRANSMEMBRANE, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.HILLER,R.G.GARCES,T.J.MALIA,V.Y.OREKHOV,M.COLOMBINI,G.WAGNER REVDAT 3 16-MAR-22 2K4T 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K4T 1 VERSN REVDAT 1 09-SEP-08 2K4T 0 JRNL AUTH S.HILLER,R.G.GARCES,T.J.MALIA,V.Y.OREKHOV,M.COLOMBINI, JRNL AUTH 2 G.WAGNER JRNL TITL SOLUTION STRUCTURE OF THE INTEGRAL HUMAN MEMBRANE PROTEIN JRNL TITL 2 VDAC-1 IN DETERGENT MICELLES. JRNL REF SCIENCE V. 321 1206 2008 JRNL REFN ISSN 0036-8075 JRNL PMID 18755977 JRNL DOI 10.1126/SCIENCE.1161302 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K4T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100676. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N; U-2H] VDAC REMARK 210 -1, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY, 4D NUS-MDD-1H-13C-13C REMARK 210 NOESY, 4D NUS-MDD-1H-15N-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 49 -70.63 -66.91 REMARK 500 1 THR A 52 71.50 -109.05 REMARK 500 1 TRP A 64 -60.89 -145.87 REMARK 500 1 GLU A 66 -73.00 -59.77 REMARK 500 1 LYS A 74 -149.87 170.51 REMARK 500 1 THR A 77 166.82 -49.11 REMARK 500 1 GLN A 90 -67.12 -91.19 REMARK 500 1 ARG A 93 162.98 -48.97 REMARK 500 1 ASN A 106 86.71 -68.48 REMARK 500 1 HIS A 122 29.29 -151.90 REMARK 500 1 ILE A 133 27.47 -151.25 REMARK 500 1 ALA A 134 52.21 70.83 REMARK 500 1 GLU A 147 94.58 -60.98 REMARK 500 1 ARG A 163 121.86 -176.91 REMARK 500 1 THR A 165 -74.88 -53.44 REMARK 500 1 GLU A 177 -71.47 -108.16 REMARK 500 1 VAL A 198 -72.60 -72.06 REMARK 500 1 ALA A 212 102.30 -59.33 REMARK 500 1 LEU A 251 178.31 -57.50 REMARK 500 1 PRO A 253 -170.46 -69.78 REMARK 500 2 VAL A 3 68.90 61.13 REMARK 500 2 TYR A 22 122.97 -174.19 REMARK 500 2 THR A 49 41.07 -93.57 REMARK 500 2 GLU A 50 -54.34 -126.21 REMARK 500 2 TYR A 67 -175.04 61.48 REMARK 500 2 LYS A 74 -151.18 170.09 REMARK 500 2 ASN A 79 -42.04 -152.17 REMARK 500 2 GLN A 90 -74.88 -61.61 REMARK 500 2 PRO A 105 -163.27 -69.77 REMARK 500 2 HIS A 122 -65.53 -91.93 REMARK 500 2 THR A 165 -78.69 -54.02 REMARK 500 2 GLU A 177 -62.24 -107.87 REMARK 500 2 VAL A 198 -168.59 -108.43 REMARK 500 2 ASN A 199 164.55 -48.35 REMARK 500 2 ALA A 212 103.69 -49.50 REMARK 500 2 PHE A 219 -65.09 -160.91 REMARK 500 2 ASN A 239 22.42 48.26 REMARK 500 2 SER A 240 16.25 54.09 REMARK 500 2 LEU A 251 -77.12 -134.23 REMARK 500 2 PRO A 253 -173.56 -69.74 REMARK 500 2 LYS A 266 19.08 59.87 REMARK 500 2 GLU A 280 103.51 -177.72 REMARK 500 2 PHE A 281 -69.02 -126.37 REMARK 500 2 LEU A 284 104.55 -52.57 REMARK 500 3 ALA A 2 51.66 -118.94 REMARK 500 3 ASN A 37 -48.16 -153.89 REMARK 500 3 THR A 65 44.09 37.25 REMARK 500 3 GLU A 66 -76.14 -145.57 REMARK 500 3 TYR A 67 -160.58 -109.54 REMARK 500 3 ASN A 79 -44.54 -146.01 REMARK 500 REMARK 500 THIS ENTRY HAS 512 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K4T A 1 283 UNP P21796 VDAC1_HUMAN 1 283 SEQADV 2K4T LEU A 284 UNP P21796 EXPRESSION TAG SEQADV 2K4T GLU A 285 UNP P21796 EXPRESSION TAG SEQADV 2K4T HIS A 286 UNP P21796 EXPRESSION TAG SEQADV 2K4T HIS A 287 UNP P21796 EXPRESSION TAG SEQADV 2K4T HIS A 288 UNP P21796 EXPRESSION TAG SEQADV 2K4T HIS A 289 UNP P21796 EXPRESSION TAG SEQADV 2K4T HIS A 290 UNP P21796 EXPRESSION TAG SEQADV 2K4T HIS A 291 UNP P21796 EXPRESSION TAG SEQRES 1 A 291 MET ALA VAL PRO PRO THR TYR ALA ASP LEU GLY LYS SER SEQRES 2 A 291 ALA ARG ASP VAL PHE THR LYS GLY TYR GLY PHE GLY LEU SEQRES 3 A 291 ILE LYS LEU ASP LEU LYS THR LYS SER GLU ASN GLY LEU SEQRES 4 A 291 GLU PHE THR SER SER GLY SER ALA ASN THR GLU THR THR SEQRES 5 A 291 LYS VAL THR GLY SER LEU GLU THR LYS TYR ARG TRP THR SEQRES 6 A 291 GLU TYR GLY LEU THR PHE THR GLU LYS TRP ASN THR ASP SEQRES 7 A 291 ASN THR LEU GLY THR GLU ILE THR VAL GLU ASP GLN LEU SEQRES 8 A 291 ALA ARG GLY LEU LYS LEU THR PHE ASP SER SER PHE SER SEQRES 9 A 291 PRO ASN THR GLY LYS LYS ASN ALA LYS ILE LYS THR GLY SEQRES 10 A 291 TYR LYS ARG GLU HIS ILE ASN LEU GLY CYS ASP MET ASP SEQRES 11 A 291 PHE ASP ILE ALA GLY PRO SER ILE ARG GLY ALA LEU VAL SEQRES 12 A 291 LEU GLY TYR GLU GLY TRP LEU ALA GLY TYR GLN MET ASN SEQRES 13 A 291 PHE GLU THR ALA LYS SER ARG VAL THR GLN SER ASN PHE SEQRES 14 A 291 ALA VAL GLY TYR LYS THR ASP GLU PHE GLN LEU HIS THR SEQRES 15 A 291 ASN VAL ASN ASP GLY THR GLU PHE GLY GLY SER ILE TYR SEQRES 16 A 291 GLN LYS VAL ASN LYS LYS LEU GLU THR ALA VAL ASN LEU SEQRES 17 A 291 ALA TRP THR ALA GLY ASN SER ASN THR ARG PHE GLY ILE SEQRES 18 A 291 ALA ALA LYS TYR GLN ILE ASP PRO ASP ALA CYS PHE SER SEQRES 19 A 291 ALA LYS VAL ASN ASN SER SER LEU ILE GLY LEU GLY TYR SEQRES 20 A 291 THR GLN THR LEU LYS PRO GLY ILE LYS LEU THR LEU SER SEQRES 21 A 291 ALA LEU LEU ASP GLY LYS ASN VAL ASN ALA GLY GLY HIS SEQRES 22 A 291 LYS LEU GLY LEU GLY LEU GLU PHE GLN ALA LEU GLU HIS SEQRES 23 A 291 HIS HIS HIS HIS HIS HELIX 1 1 ASN A 267 GLY A 271 5 5 SHEET 1 A20 LEU A 26 THR A 33 0 SHEET 2 A20 GLU A 40 ASN A 48 -1 O ALA A 47 N ILE A 27 SHEET 3 A20 THR A 55 TYR A 62 -1 O THR A 55 N SER A 46 SHEET 4 A20 GLY A 68 ASN A 76 -1 O PHE A 71 N TYR A 62 SHEET 5 A20 THR A 80 GLU A 88 -1 O THR A 80 N ASN A 76 SHEET 6 A20 LEU A 95 PHE A 103 -1 O PHE A 103 N LEU A 81 SHEET 7 A20 LYS A 110 LYS A 119 -1 O LYS A 115 N THR A 98 SHEET 8 A20 ASN A 124 PHE A 131 -1 O MET A 129 N ILE A 114 SHEET 9 A20 SER A 137 TYR A 146 -1 O VAL A 143 N ASN A 124 SHEET 10 A20 TRP A 149 GLU A 158 -1 O TYR A 153 N LEU A 142 SHEET 11 A20 SER A 167 LYS A 174 -1 O GLY A 172 N LEU A 150 SHEET 12 A20 PHE A 178 ASN A 185 -1 O THR A 182 N VAL A 171 SHEET 13 A20 GLU A 189 GLN A 196 -1 O GLU A 189 N ASN A 185 SHEET 14 A20 GLU A 203 THR A 211 -1 O THR A 204 N GLN A 196 SHEET 15 A20 THR A 217 ASP A 228 -1 O GLY A 220 N ASN A 207 SHEET 16 A20 ALA A 231 ASN A 238 -1 O ALA A 235 N ALA A 223 SHEET 17 A20 ILE A 243 THR A 250 -1 O GLY A 244 N LYS A 236 SHEET 18 A20 LYS A 256 LEU A 263 -1 O ALA A 261 N LEU A 245 SHEET 19 A20 LYS A 274 GLN A 282 -1 O GLY A 278 N THR A 258 SHEET 20 A20 LEU A 26 THR A 33 1 N LEU A 26 O LEU A 277 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000