PDB Short entry for 2K7I HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-AUG-08 2K7I TITLE SOLUTION NMR STRUCTURE OF PROTEIN ATU0232 FROM AGROBACTERIUM TITLE 2 TUMEFACIENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET TITLE 3 ATT3. ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET ATC0223. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0339 PROTEIN ATU0232; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: ATU0232, AGR_C_390; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS PROTEIN OF UNKNOWN FUNCTION, SWAPPED DIMER. PSI2, STRUCTURAL KEYWDS 2 GENOMICS, UNKNOWN FUNCTION, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,S.SRISAILAM,A.YEE,S.BANSAL,A.SEMESI,J.PRESTEGARD, AUTHOR 2 G.T.MONTELIONE,C.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 5 19-FEB-20 2K7I 1 REMARK REVDAT 4 23-MAY-12 2K7I 1 REMARK REVDAT 3 13-JUL-11 2K7I 1 VERSN REVDAT 2 24-FEB-09 2K7I 1 VERSN REVDAT 1 07-OCT-08 2K7I 0 JRNL AUTH A.LEMAK,S.SRISAILAM,A.YEE,S.BANSAL,A.SEMESI,J.PRESTEGARD, JRNL AUTH 2 C.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF PROTEIN ATU0232 FROM AGROBACTERIUM JRNL TITL 2 TUMEFACIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR DYNAMICS IN WATER BATH WITH REMARK 3 RDC RESTRAINTS REMARK 4 REMARK 4 2K7I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000100773. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.7 REMARK 210 IONIC STRENGTH : 500 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] ATU0232, REMARK 210 10 MM TRIS, 500 MM SODIUM REMARK 210 CHLORIDE, 10 UM ZNSO4, 10 MM DTT, REMARK 210 0.01 % NAN3, 10 MM BENZAMIDINE, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-13C; REMARK 210 U-15N] ATU0232, 10 MM TRIS, 500 REMARK 210 MM SODIUM CHLORIDE, 10 UM ZNSO4, REMARK 210 10 MM DTT, 0.01 % NAN3, 10 MM REMARK 210 BENZAMIDINE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D (H)C(CO)NH_ REMARK 210 TOCSY; 3D H(CCO)NH_TOCSY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D 1H-13C_AROM REMARK 210 NOESY; 2D 1H-15N HSQC(IPAP) REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FMC, TALOS, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 32 -53.55 82.79 REMARK 500 1 LYS A 33 -57.45 -165.88 REMARK 500 1 ASN A 48 17.25 -163.64 REMARK 500 1 TYR B 32 -53.72 82.63 REMARK 500 1 LYS B 33 -57.84 -166.45 REMARK 500 1 ASN B 48 17.72 -163.51 REMARK 500 2 TYR A 32 -63.05 75.74 REMARK 500 2 LYS A 33 -49.51 -152.87 REMARK 500 2 ASN A 48 16.49 -174.07 REMARK 500 2 MET A 60 45.52 -99.78 REMARK 500 2 TYR B 32 -63.34 75.63 REMARK 500 2 LYS B 33 -49.48 -152.67 REMARK 500 2 ASN B 48 16.21 -174.59 REMARK 500 3 TYR A 32 -52.11 78.80 REMARK 500 3 LYS A 33 -57.82 -165.35 REMARK 500 3 ASN A 48 15.50 -153.26 REMARK 500 3 TYR B 32 -51.48 78.08 REMARK 500 3 LYS B 33 -58.02 -165.28 REMARK 500 3 ASN B 48 14.98 -151.59 REMARK 500 3 THR B 59 40.26 33.30 REMARK 500 4 TYR A 32 -57.31 81.71 REMARK 500 4 LYS A 33 -56.02 -154.96 REMARK 500 4 ASN A 48 15.62 -164.13 REMARK 500 4 MET A 60 90.43 -64.96 REMARK 500 4 TYR B 32 -56.66 81.06 REMARK 500 4 LYS B 33 -55.89 -154.76 REMARK 500 4 ASN B 48 15.57 -164.30 REMARK 500 4 THR B 61 -157.88 -113.78 REMARK 500 5 TYR A 32 -51.19 81.81 REMARK 500 5 LYS A 33 -53.97 -162.20 REMARK 500 5 ASN A 48 16.28 -154.96 REMARK 500 5 THR A 59 -42.39 -133.90 REMARK 500 5 TYR B 32 -51.19 81.34 REMARK 500 5 LYS B 33 -53.67 -162.43 REMARK 500 5 ARG B 47 -71.49 -69.29 REMARK 500 5 ASN B 48 16.46 -153.86 REMARK 500 6 TYR A 32 -58.17 78.38 REMARK 500 6 LYS A 33 -59.18 -158.85 REMARK 500 6 ASN A 48 17.79 -165.00 REMARK 500 6 MET A 60 -68.12 -136.36 REMARK 500 6 TYR B 32 -57.99 78.38 REMARK 500 6 LYS B 33 -59.30 -158.63 REMARK 500 6 ASN B 48 17.94 -165.13 REMARK 500 6 THR B 59 -66.58 50.45 REMARK 500 7 TYR A 32 -65.80 -16.84 REMARK 500 7 LYS A 33 -66.74 -163.56 REMARK 500 7 ASN A 48 17.43 -173.00 REMARK 500 7 LYS B 33 -67.31 -163.61 REMARK 500 7 ASN B 48 17.51 -172.05 REMARK 500 7 MET B 60 -79.83 -105.20 REMARK 500 REMARK 500 THIS ENTRY HAS 175 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 28 SER A 29 10 148.43 REMARK 500 SER B 28 SER B 29 10 147.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15916 RELATED DB: BMRB REMARK 900 RELATED ID: ATT3 RELATED DB: TARGETDB DBREF 2K7I A 1 62 UNP Q8UIR1 Y232_AGRT5 1 62 DBREF 2K7I B 1 62 UNP Q8UIR1 Y232_AGRT5 1 62 SEQADV 2K7I MET A -20 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLY A -19 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I SER A -18 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I SER A -17 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS A -16 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS A -15 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS A -14 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS A -13 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS A -12 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS A -11 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I SER A -10 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I SER A -9 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLY A -8 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I ARG A -7 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLU A -6 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I ASN A -5 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I LEU A -4 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I TYR A -3 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I PHE A -2 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLN A -1 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLY A 0 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I MET B -20 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLY B -19 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I SER B -18 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I SER B -17 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS B -16 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS B -15 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS B -14 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS B -13 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS B -12 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I HIS B -11 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I SER B -10 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I SER B -9 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLY B -8 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I ARG B -7 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLU B -6 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I ASN B -5 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I LEU B -4 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I TYR B -3 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I PHE B -2 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLN B -1 UNP Q8UIR1 EXPRESSION TAG SEQADV 2K7I GLY B 0 UNP Q8UIR1 EXPRESSION TAG SEQRES 1 A 83 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 83 ARG GLU ASN LEU TYR PHE GLN GLY MET TYR LYS PHE GLU SEQRES 3 A 83 ILE TYR GLN ASP LYS ALA GLY GLU TYR ARG PHE ARG PHE SEQRES 4 A 83 LYS ALA SER ASN GLY GLU THR MET PHE SER SER GLU GLY SEQRES 5 A 83 TYR LYS ALA LYS ALA SER ALA ILE HIS ALA ILE GLU SER SEQRES 6 A 83 ILE LYS ARG ASN SER ALA GLY ALA ASP THR VAL ASP LEU SEQRES 7 A 83 THR THR MET THR ALA SEQRES 1 B 83 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 83 ARG GLU ASN LEU TYR PHE GLN GLY MET TYR LYS PHE GLU SEQRES 3 B 83 ILE TYR GLN ASP LYS ALA GLY GLU TYR ARG PHE ARG PHE SEQRES 4 B 83 LYS ALA SER ASN GLY GLU THR MET PHE SER SER GLU GLY SEQRES 5 B 83 TYR LYS ALA LYS ALA SER ALA ILE HIS ALA ILE GLU SER SEQRES 6 B 83 ILE LYS ARG ASN SER ALA GLY ALA ASP THR VAL ASP LEU SEQRES 7 B 83 THR THR MET THR ALA HELIX 1 1 ALA A 34 SER A 49 1 16 HELIX 2 2 ALA B 34 SER B 49 1 16 HELIX 3 3 THR B 58 THR B 61 5 4 SHEET 1 A 4 PHE A 27 SER A 28 0 SHEET 2 A 4 TYR A 14 PHE A 18 -1 N PHE A 18 O PHE A 27 SHEET 3 A 4 LYS A 3 GLN A 8 -1 N TYR A 7 O ARG A 15 SHEET 4 A 4 ASP B 53 ASP B 56 1 O VAL B 55 N ILE A 6 SHEET 1 B 4 ASP A 53 ASP A 56 0 SHEET 2 B 4 LYS B 3 GLN B 8 1 O ILE B 6 N VAL A 55 SHEET 3 B 4 TYR B 14 PHE B 18 -1 O ARG B 15 N TYR B 7 SHEET 4 B 4 PHE B 27 SER B 28 -1 O PHE B 27 N PHE B 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000