PDB Short entry for 2K9P HEADER MEMBRANE PROTEIN 21-OCT-08 2K9P TITLE STRUCTURE OF TM1_TM2 IN LPPG MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE ALPHA FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TM1-TM2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: STE2, YFL026W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: AI (ARABINOSE INDUCED); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PLC01; SOURCE 12 OTHER_DETAILS: ARABINOSE-INDUCED E.COLI VECTOR, PROTEIN ENCODED AS SOURCE 13 THE DELTA-TRP FUSION, CLEAVED BY CNBR CLEAVAGE KEYWDS GPCR, MICELLE, STRUCTURRAL BIOLOGY, FRAGMENT, G-PROTEIN COUPLED KEYWDS 2 RECEPTOR, GLYCOPROTEIN, MEMBRANE, PHEROMONE RESPONSE, KEYWDS 3 PHOSPHOPROTEIN, RECEPTOR, TRANSDUCER, TRANSMEMBRANE, MEMBRANE KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.NEUMOIN,O.ZERBE,F.NAIDER REVDAT 6 14-JUN-23 2K9P 1 DBREF REVDAT 5 20-OCT-21 2K9P 1 SEQADV REVDAT 4 21-OCT-20 2K9P 1 SOURCE REVDAT 3 19-FEB-20 2K9P 1 REMARK REVDAT 2 13-OCT-10 2K9P 1 REMARK SOURCE REVDAT 1 05-MAY-09 2K9P 0 JRNL AUTH A.NEUMOIN,L.S.COHEN,B.ARSHAVA,S.TANTRY,J.M.BECKER,O.ZERBE, JRNL AUTH 2 F.NAIDER JRNL TITL STRUCTURE OF A DOUBLE TRANSMEMBRANE FRAGMENT OF A JRNL TITL 2 G-PROTEIN-COUPLED RECEPTOR IN MICELLES. JRNL REF BIOPHYS.J. V. 96 3187 2009 JRNL REFN ISSN 0006-3495 JRNL PMID 19383463 JRNL DOI 10.1016/J.BPJ.2009.01.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AMBER6 ENERGY MINIMIZATION IN EXPLICIT REMARK 3 SOLVENT REMARK 4 REMARK 4 2K9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000100852. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 320 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 200 MM LPPG, 20 MM NA-PHOSPHATE REMARK 210 BUFFER, 0.4 MM [U-100% 13C; U- REMARK 210 100% 15N] TM1-TM2 PEPTIDE, 90% REMARK 210 H2O/10% D2O; 200 MM LPPG, 20 MM REMARK 210 NA-PHOSPHATE BUFFER, 0.4 MM [U- REMARK 210 100% 15N] TM1-TM2 PEPTIDE, 90% REMARK 210 H2O/10% D2O; 200 MM LPPG, 20 MM REMARK 210 NA-PHOSPHATE BUFFER, 0.4 MM [U- REMARK 210 100% 15N; 80% 2H] TM1-TM2 REMARK 210 PEPTIDE, 90% H2O/10% D2O; 200 MM REMARK 210 [>85% 2H] LPPG, 20 MM NA- REMARK 210 PHOSPHATE BUFFER, 0.4 MM [U-100% REMARK 210 13C; U-100% 15N] TM1-TM2 PEPTIDE, REMARK 210 90% H2O/10% D2O; 200 MM [>85% REMARK 210 2H] LPPG, 20 MM NA-PHOSPHATE REMARK 210 BUFFER, 0.4 MM [U-100% 13C; U- REMARK 210 100% 15N; >98% 2H; ME(ILE(HD1), REMARK 210 LEU(HD),VAL(HG)) 1H] TM1-TM2 REMARK 210 PEPTIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D CBCA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HN(CA)CO; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 55, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 47 -46.25 -136.34 REMARK 500 1 THR A 72 -63.85 -102.85 REMARK 500 1 SER A 107 141.71 176.30 REMARK 500 2 SER A 47 49.17 -169.26 REMARK 500 2 THR A 48 -59.09 -132.27 REMARK 500 3 SER A 34 100.29 -54.35 REMARK 500 3 SER A 47 64.61 -170.01 REMARK 500 3 THR A 48 -57.37 -148.02 REMARK 500 3 THR A 78 78.78 -111.21 REMARK 500 3 SER A 108 23.09 -78.49 REMARK 500 4 SER A 47 34.90 -159.51 REMARK 500 4 THR A 48 -59.80 -127.96 REMARK 500 4 SER A 107 -167.38 -118.94 REMARK 500 5 SER A 47 51.44 -169.23 REMARK 500 5 THR A 48 -61.83 -133.92 REMARK 500 5 THR A 78 78.06 -114.67 REMARK 500 6 SER A 47 48.24 -166.37 REMARK 500 6 THR A 48 -58.77 -131.02 REMARK 500 7 THR A 37 173.45 -59.89 REMARK 500 7 SER A 47 50.46 -167.55 REMARK 500 7 THR A 48 -46.93 -132.17 REMARK 500 8 SER A 47 42.43 -157.06 REMARK 500 8 THR A 48 -61.80 -134.02 REMARK 500 9 THR A 35 26.66 47.32 REMARK 500 9 SER A 47 49.08 -153.46 REMARK 500 9 THR A 48 -58.47 -139.43 REMARK 500 9 THR A 72 -63.79 -106.89 REMARK 500 9 ARG A 76 94.25 -56.47 REMARK 500 9 LYS A 77 -163.43 -124.87 REMARK 500 9 SER A 108 13.57 59.58 REMARK 500 10 ASN A 32 -178.64 -170.22 REMARK 500 10 SER A 47 -46.38 -145.63 REMARK 500 10 SER A 73 54.44 -101.91 REMARK 500 10 ARG A 74 87.58 -41.18 REMARK 500 10 SER A 75 -74.93 -65.57 REMARK 500 10 ARG A 76 -72.59 -149.54 REMARK 500 10 LYS A 77 150.92 174.41 REMARK 500 11 ASN A 32 -63.17 -121.81 REMARK 500 11 SER A 47 52.66 -161.51 REMARK 500 11 THR A 48 -62.29 -139.71 REMARK 500 11 THR A 72 -60.29 -107.72 REMARK 500 11 SER A 75 -71.34 -50.30 REMARK 500 11 LYS A 77 89.87 -69.01 REMARK 500 11 SER A 107 94.27 -49.85 REMARK 500 12 SER A 47 -40.93 -145.78 REMARK 500 12 THR A 48 -76.71 -89.40 REMARK 500 12 THR A 72 -64.54 -102.67 REMARK 500 13 THR A 35 29.89 44.76 REMARK 500 13 SER A 47 61.34 -155.52 REMARK 500 13 THR A 48 -57.91 -151.24 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15995 RELATED DB: BMRB DBREF 2K9P A 31 110 UNP P06842 STE2_YEAST 31 110 SEQADV 2K9P LEU A 54 UNP P06842 MET 54 ENGINEERED MUTATION SEQADV 2K9P SER A 59 UNP P06842 CYS 59 ENGINEERED MUTATION SEQADV 2K9P VAL A 69 UNP P06842 MET 69 ENGINEERED MUTATION SEQADV 2K9P ILE A 71 UNP P06842 MET 71 ENGINEERED MUTATION SEQRES 1 A 80 GLY ASN GLY SER THR ILE THR PHE ASP GLU LEU GLN GLY SEQRES 2 A 80 LEU VAL ASN SER THR VAL THR GLN ALA ILE LEU PHE GLY SEQRES 3 A 80 VAL ARG SER GLY ALA ALA ALA LEU THR LEU ILE VAL VAL SEQRES 4 A 80 TRP ILE THR SER ARG SER ARG LYS THR PRO ILE PHE ILE SEQRES 5 A 80 ILE ASN GLN VAL SER LEU PHE LEU ILE ILE LEU HIS SER SEQRES 6 A 80 ALA LEU TYR PHE LYS TYR LEU LEU SER ASN TYR SER SER SEQRES 7 A 80 VAL THR HELIX 1 1 PHE A 38 SER A 73 1 36 HELIX 2 2 PRO A 79 SER A 107 1 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000