PDB Short entry for 2KAT HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-NOV-08 2KAT TITLE SOLUTION STRUCTURE OF PROTEIN BPP2914 FROM BORDETELLA PARAPERTUSSIS. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BPR206 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PARAPERTUSSIS; SOURCE 3 ORGANISM_TAXID: 519; SOURCE 4 GENE: BPP2914; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21-23C KEYWDS NESG, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WU,J.L.MILLS,D.WANG,M.JIANG,E.L.FOOTE,R.XIAO,B.SATHYAMOORTHY, AUTHOR 2 D.SUKUMARAN,R.NAIR,J.K.EVERETT,G.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 5 08-MAY-24 2KAT 1 REMARK REVDAT 4 14-JUN-23 2KAT 1 REMARK REVDAT 3 20-OCT-21 2KAT 1 SEQADV REVDAT 2 19-FEB-20 2KAT 1 REMARK REVDAT 1 16-DEC-08 2KAT 0 JRNL AUTH Y.WU,J.L.MILLS,D.WANG,M.JIANG,E.L.FOOTE,R.XIAO, JRNL AUTH 2 B.SATHYAMOORTHY,D.SUKUMARAN,R.NAIR,J.K.EVERETT,G.SWAPNA, JRNL AUTH 3 T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION STRUCTURE OF PROTEIN BPP2914 FROM BORDETELLA JRNL TITL 2 PARAPERTUSSIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET BPR206 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000100891. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-5% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 0.3 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; (4,3) REMARK 210 D GFT HCCH-COSY; 3D, 15N-13C REMARK 210 RESOLVED SIMULTANIOUS NOESY; 3D REMARK 210 HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, AUTOASSIGN, REMARK 210 AUTOSTRUCTURE, XEASY, NMRPIPE, REMARK 210 PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 114.23 73.53 REMARK 500 1 GLN A 34 47.48 -96.26 REMARK 500 2 ASP A 17 82.18 -68.33 REMARK 500 2 GLN A 34 46.10 -97.18 REMARK 500 2 HIS A 114 139.98 60.59 REMARK 500 3 ALA A 3 165.83 67.83 REMARK 500 3 ASN A 18 -58.96 -158.55 REMARK 500 3 MET A 19 -40.73 -158.21 REMARK 500 3 GLU A 109 -95.62 -88.71 REMARK 500 3 HIS A 111 45.35 -91.72 REMARK 500 3 HIS A 113 -82.18 72.55 REMARK 500 4 ASP A 17 -79.79 -72.06 REMARK 500 4 ASN A 18 -162.95 54.49 REMARK 500 4 GLN A 34 71.67 -103.94 REMARK 500 4 HIS A 112 79.42 58.40 REMARK 500 4 HIS A 113 -69.45 -159.95 REMARK 500 4 HIS A 114 148.98 68.28 REMARK 500 5 ALA A 3 149.11 69.48 REMARK 500 5 THR A 51 83.41 -158.17 REMARK 500 5 HIS A 111 -96.58 -145.19 REMARK 500 5 HIS A 112 22.25 -152.76 REMARK 500 5 HIS A 113 105.79 62.60 REMARK 500 6 THR A 16 55.47 -99.77 REMARK 500 6 ASP A 17 -70.37 -71.76 REMARK 500 6 ASN A 18 173.28 67.36 REMARK 500 6 GLN A 34 45.64 -89.72 REMARK 500 6 HIS A 111 46.17 -81.70 REMARK 500 7 ALA A 3 160.36 64.75 REMARK 500 7 GLN A 34 73.64 -104.54 REMARK 500 7 HIS A 112 48.37 -84.76 REMARK 500 8 THR A 16 39.64 -95.41 REMARK 500 8 MET A 19 -44.72 -170.78 REMARK 500 8 THR A 51 55.36 -98.95 REMARK 500 8 GLU A 109 -66.29 -105.59 REMARK 500 9 THR A 16 75.96 -113.85 REMARK 500 9 GLN A 34 45.82 -87.57 REMARK 500 9 HIS A 111 86.57 -164.08 REMARK 500 10 GLN A 34 46.28 -91.16 REMARK 500 10 GLU A 109 -78.17 -70.52 REMARK 500 10 HIS A 110 14.35 -161.35 REMARK 500 11 MET A 19 -61.39 -102.65 REMARK 500 11 GLN A 34 46.74 -103.43 REMARK 500 12 ASN A 18 -76.95 -135.04 REMARK 500 12 MET A 19 -57.30 -145.40 REMARK 500 12 LEU A 21 -33.19 -175.14 REMARK 500 12 GLN A 34 45.94 -98.69 REMARK 500 13 ALA A 3 156.48 64.46 REMARK 500 13 GLN A 34 45.10 -97.79 REMARK 500 13 GLU A 109 -2.40 65.66 REMARK 500 13 HIS A 113 30.73 -175.61 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16030 RELATED DB: BMRB REMARK 900 RELATED ID: BPR206 RELATED DB: TARGETDB DBREF 2KAT A 1 107 UNP Q7W6J5 Q7W6J5_BORPA 1 107 SEQADV 2KAT ILE A 4 UNP Q7W6J5 MET 4 ENGINEERED MUTATION SEQADV 2KAT LEU A 108 UNP Q7W6J5 EXPRESSION TAG SEQADV 2KAT GLU A 109 UNP Q7W6J5 EXPRESSION TAG SEQADV 2KAT HIS A 110 UNP Q7W6J5 EXPRESSION TAG SEQADV 2KAT HIS A 111 UNP Q7W6J5 EXPRESSION TAG SEQADV 2KAT HIS A 112 UNP Q7W6J5 EXPRESSION TAG SEQADV 2KAT HIS A 113 UNP Q7W6J5 EXPRESSION TAG SEQADV 2KAT HIS A 114 UNP Q7W6J5 EXPRESSION TAG SEQADV 2KAT HIS A 115 UNP Q7W6J5 EXPRESSION TAG SEQRES 1 A 115 MET GLN ALA ILE THR GLU ARG LEU GLU ALA MET LEU ALA SEQRES 2 A 115 GLN GLY THR ASP ASN MET LEU LEU ARG PHE THR LEU GLY SEQRES 3 A 115 LYS THR TYR ALA GLU HIS GLU GLN PHE ASP ALA ALA LEU SEQRES 4 A 115 PRO HIS LEU ARG ALA ALA LEU ASP PHE ASP PRO THR TYR SEQRES 5 A 115 SER VAL ALA TRP LYS TRP LEU GLY LYS THR LEU GLN GLY SEQRES 6 A 115 GLN GLY ASP ARG ALA GLY ALA ARG GLN ALA TRP GLU SER SEQRES 7 A 115 GLY LEU ALA ALA ALA GLN SER ARG GLY ASP GLN GLN VAL SEQRES 8 A 115 VAL LYS GLU LEU GLN VAL PHE LEU ARG ARG LEU ALA ARG SEQRES 9 A 115 GLU ASP ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ALA A 3 ALA A 13 1 11 HELIX 2 2 ASN A 18 HIS A 32 1 15 HELIX 3 3 GLN A 34 ASP A 49 1 16 HELIX 4 4 TYR A 52 GLY A 67 1 16 HELIX 5 5 ASP A 68 GLY A 87 1 20 HELIX 6 6 ASP A 88 HIS A 110 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000