PDB Short entry for 2KCX HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-DEC-08 2KCX TITLE SOLUTION NMR STRUCTURE OF KAZAL-1 DOMAIN OF HUMAN FOLLISTATIN-RELATED TITLE 2 PROTEIN 3 (FSTL-3). NORTHEAST STRUCTURAL GENOMICS TARGET HR6186A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOLLISTATIN-RELATED PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KAZAL-1 DOMAIN, RESIDUES 97-169; COMPND 5 SYNONYM: FOLLISTATIN-LIKE 3, FOLLISTATIN-RELATED GENE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FSTL3, FLRG, UNQ674/PRO1308; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KAZAL-1, FOLLISTATIN, CHROMOSOMAL REARRANGEMENT, GLYCOPROTEIN, KEYWDS 2 NUCLEUS, PROTO-ONCOGENE, SECRETED, STRUCTURAL GENOMICS, PSI-2, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, NESG, UNKNOWN FUNCTION, NUCLEOTIDE-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROSSI,Y.CHIANG,S.ANDERSON,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (NESG) REVDAT 3 16-MAR-22 2KCX 1 REMARK REVDAT 2 07-JUL-09 2KCX 1 AUTHOR REVDAT 1 10-MAR-09 2KCX 0 JRNL AUTH P.ROSSI,Y.CHIANG,S.ANDERSON,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF KAZAL-1 DOMAIN OF HUMAN JRNL TITL 2 FOLLISTATIN-RELATED PROTEIN 3 (FSTL-3). NORTHEAST STRUCTURAL JRNL TITL 3 GENOMICS TARGET HR6186A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CNS 1.2, PROCHECK, MOLPROBITY REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 LASKOWSKI, MACARTHUR, SMITH, JONES, HUTCHINSON, REMARK 3 MORRIS, MOSS AND THO (PROCHECK), RICHARDSON REMARK 3 (MOLPROBITY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MONOMER BY GEL FILTRATION REMARK 3 CHROMATOGRAPHY/LIGHT SCATTERING AND BY NMR. T1/T2(CPMG) (MS) = REMARK 3 516.1/136.2, TAUC = 3.94(NS). CONSISTENT WITH MOLECULAR WEIGHT. REMARK 3 STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. NOESY REMARK 3 ASSIGNMENTS BY CYANA2.1. 20 OF 100 STRUCTURES LOWEST TARGET REMARK 3 FUNCTION SELECTED WITH CYANA-2.1. SELECTED MODELS ARE FURTHER REMARK 3 REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL WITH REMARK 3 PARAM19). ASSIGNMENT STATS (EXCLUDING C-TERM TAG): BACKBONE REMARK 3 98.10%, SIDECHAIN 88.50%, AROMATIC (SC) 75.00%. STRUCTURE BASED REMARK 3 ON 912 NOE, 65 DIHE. MAX NOE VIOLATION: 0.19 A (1MODEL); MAX REMARK 3 DIHE VIOLATION: 5.4 DEG. 6 TOTAL CLOSE CONTACTS PER 20 MODELS. REMARK 3 STRUCTURE QUALITY FACTOR (PSVS 1.3): ORDERED RESIDUES RANGES: 4- REMARK 3 9, 13-27, 33-34, 37-58, 61-69, 72-73 FOR [S(PHI)+S(PSI)] > 1.8. REMARK 3 SECONDARY STRUCTURE - ALPHA HELICES: 50-60, BETA STRANDS: 13-18, REMARK 3 21-26, 46-47, 39-41, 66-69. RMSD 1.3 BACKBONE, 1.8 ALL HEAVY REMARK 3 ATOMS. RAMA. DISTRIBUTION: 92.1/7.8/0.1/0.0. PROCHECK (PSI-PHI): REMARK 3 -0.34/-1.02 (RAW/Z), PROCHECK (ALL): -0.33/-1.95 (RAW/Z), REMARK 3 MOLPROBITY CLASH: 19.69/-1.85 (RAW/Z). RPF SCORES ALL ASSIGNED REMARK 3 RESIDUES (FIT OF NOESY PEAKLISTS TO STRUCTURE): RECALL: 0.99, REMARK 3 PRECISION: 0.85, F-MEASURE: 0.91, DP-SCORE: 0.82. REMARK 4 REMARK 4 2KCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000100964. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 FSTL-3-1, 20 MM MES-2, 200 MM REMARK 210 SODIUM CHLORIDE-3, 90% H2O/10% REMARK 210 D2O; 0.2 MM [U-100% 15N] FSTL-3- REMARK 210 4, 20 MM MES-5, 200 MM SODIUM REMARK 210 CHLORIDE-6, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D CCH- REMARK 210 TOCSY; 2D 1H-15N HET_NOE; 2D N15 REMARK 210 T1; 2D N15 T2 CPMG REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, PSVS 1.3, NMRPIPE 2008, REMARK 210 SPARKY 2.113, TOPSPIN 2.1, PINE, REMARK 210 MOLMOL, PDBSTAT REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 11 88.59 -60.67 REMARK 500 1 PRO A 28 107.75 -59.71 REMARK 500 1 SER A 31 -145.83 -78.76 REMARK 500 1 ARG A 59 34.85 -78.04 REMARK 500 2 PRO A 11 107.84 -50.39 REMARK 500 2 ASP A 29 31.70 -76.41 REMARK 500 2 SER A 31 75.88 -69.17 REMARK 500 2 ARG A 59 51.69 -106.35 REMARK 500 3 ASP A 2 97.50 -60.26 REMARK 500 3 CYS A 26 108.55 -54.26 REMARK 500 3 ASP A 29 82.50 -67.86 REMARK 500 3 SER A 31 -53.90 -145.65 REMARK 500 3 ALA A 35 38.80 -82.29 REMARK 500 3 CYS A 72 94.86 -61.90 REMARK 500 4 PRO A 11 90.35 -67.51 REMARK 500 4 ASP A 29 41.49 -78.35 REMARK 500 4 CYS A 72 99.59 -48.28 REMARK 500 5 PRO A 11 90.53 -65.14 REMARK 500 5 CYS A 26 97.88 -56.86 REMARK 500 5 ASP A 29 36.22 -75.66 REMARK 500 5 ARG A 36 -15.20 69.33 REMARK 500 6 CYS A 26 99.83 -62.82 REMARK 500 6 ASP A 29 94.22 -65.36 REMARK 500 6 CYS A 72 91.80 34.84 REMARK 500 7 CYS A 26 105.04 -58.60 REMARK 500 7 CYS A 30 -39.91 73.40 REMARK 500 7 CYS A 72 98.16 -67.01 REMARK 500 8 PRO A 11 92.13 -61.23 REMARK 500 8 PRO A 28 24.45 -79.59 REMARK 500 8 CYS A 72 83.78 -66.08 REMARK 500 9 CYS A 26 106.74 -52.18 REMARK 500 9 ASP A 29 96.86 63.36 REMARK 500 9 ARG A 36 15.21 177.51 REMARK 500 9 ARG A 59 49.51 -97.17 REMARK 500 10 SER A 31 -76.44 -77.01 REMARK 500 11 CYS A 30 78.62 -65.52 REMARK 500 11 CYS A 72 102.49 -53.85 REMARK 500 12 PRO A 11 92.76 -61.67 REMARK 500 12 PRO A 22 93.80 -66.75 REMARK 500 12 CYS A 26 97.82 -68.42 REMARK 500 12 CYS A 30 40.97 -169.60 REMARK 500 12 CYS A 72 97.96 -60.89 REMARK 500 13 SER A 31 -83.01 -138.43 REMARK 500 13 ARG A 36 -13.38 -143.87 REMARK 500 13 ARG A 59 30.31 -84.99 REMARK 500 13 CYS A 72 84.63 -55.17 REMARK 500 14 SER A 3 -166.41 -123.76 REMARK 500 14 PRO A 11 42.83 -78.36 REMARK 500 14 CYS A 26 95.86 -58.72 REMARK 500 14 PRO A 28 -158.87 -82.68 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR6186A RELATED DB: TARGETDB DBREF 2KCX A 2 74 UNP O95633 FSTL3_HUMAN 97 169 SEQADV 2KCX SER A 1 UNP O95633 EXPRESSION TAG SEQRES 1 A 74 SER ASP SER CYS ASP GLY VAL GLU CYS GLY PRO GLY LYS SEQRES 2 A 74 ALA CYS ARG MET LEU GLY GLY ARG PRO ARG CYS GLU CYS SEQRES 3 A 74 ALA PRO ASP CYS SER GLY LEU PRO ALA ARG LEU GLN VAL SEQRES 4 A 74 CYS GLY SER ASP GLY ALA THR TYR ARG ASP GLU CYS GLU SEQRES 5 A 74 LEU ARG ALA ALA ARG CYS ARG GLY HIS PRO ASP LEU SER SEQRES 6 A 74 VAL MET TYR ARG GLY ARG CYS ARG LYS HELIX 1 1 ASP A 49 ARG A 59 1 11 SHEET 1 A 2 ALA A 14 LEU A 18 0 SHEET 2 A 2 ARG A 21 GLU A 25 -1 O ARG A 21 N LEU A 18 SHEET 1 B 3 THR A 46 TYR A 47 0 SHEET 2 B 3 VAL A 39 GLY A 41 -1 N VAL A 39 O TYR A 47 SHEET 3 B 3 VAL A 66 ARG A 69 -1 O TYR A 68 N CYS A 40 SSBOND 1 CYS A 4 CYS A 15 1555 1555 2.03 SSBOND 2 CYS A 9 CYS A 24 1555 1555 2.03 SSBOND 3 CYS A 26 CYS A 58 1555 1555 2.03 SSBOND 4 CYS A 30 CYS A 51 1555 1555 2.03 SSBOND 5 CYS A 40 CYS A 72 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000