PDB Short entry for 2KK5 HEADER DNA 15-JUN-09 2KK5 TITLE HIGH FIDELITY BASE PAIRING AT THE 3'-TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*CP*GP*CP*GP*(2AU))-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS ANTHRAQUINONE-LINKED DNA, DNA EXPDTA SOLUTION NMR NUMMDL 3 AUTHOR A.PATRA,C.RICHERT REVDAT 3 16-MAR-22 2KK5 1 REMARK LINK REVDAT 2 08-SEP-09 2KK5 1 JRNL REVDAT 1 21-JUL-09 2KK5 0 JRNL AUTH A.PATRA,C.RICHERT JRNL TITL HIGH FIDELITY BASE PAIRING AT THE 3'-TERMINUS. JRNL REF J.AM.CHEM.SOC. V. 131 12671 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19722718 JRNL DOI 10.1021/JA9033654 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101220. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM ANTHRAQUINON CAPPED DNA REMARK 210 DUPLEX, 100% D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 3 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AQC A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AQC B 7 DBREF 2KK5 A 1 6 PDB 2KK5 2KK5 1 6 DBREF 2KK5 B 1 6 PDB 2KK5 2KK5 1 6 SEQRES 1 A 6 DA DC DG DC DG 2AU SEQRES 1 B 6 DA DC DG DC DG 2AU MODRES 2KK5 2AU A 6 U 2'-AMINOURIDINE MODRES 2KK5 2AU B 6 U 2'-AMINOURIDINE HET 2AU A 6 29 HET 2AU B 6 29 HET AQC A 7 27 HET AQC B 7 27 HETNAM 2AU 2'-AMINOURIDINE HETNAM AQC 9,10-DIOXO-9,10-DIHYDROANTHRACENE-2-CARBOXAMIDE FORMUL 1 2AU 2(C9 H14 N3 O8 P) FORMUL 3 AQC 2(C15 H9 N O3) LINK O3' DG A 5 P 2AU A 6 1555 1555 1.61 LINK C2' 2AU A 6 N2' AQC A 7 1555 1555 1.46 LINK O3' DG B 5 P 2AU B 6 1555 1555 1.61 LINK C2' 2AU B 6 N2' AQC B 7 1555 1555 1.45 SITE 1 AC1 4 DG A 5 2AU A 6 DA B 1 DC B 2 SITE 1 AC2 4 DA A 1 DC A 2 DG B 5 2AU B 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000