PDB Short entry for 2KN0 HEADER APOPTOSIS 11-AUG-09 2KN0 TITLE SOLUTION NMR STRUCTURE OF XENOPUS FN14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FN14; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23-72; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: FN14, TNFRSF12A; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS FN14, TWEAK, TNF RECEPTOR, CRD, MUTAGENESIS, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.PELLEGRINI,L.WILLEN,M.PERROUD,D.KRUSHINSKIE,K.STRAUCH,H.CUERVO, AUTHOR 2 Y.SUN,E.S.DAY,P.SCHNEIDER,T.S.ZHENG REVDAT 3 01-MAY-13 2KN0 1 JRNL REVDAT 2 10-APR-13 2KN0 1 JRNL VERSN REVDAT 1 29-JUN-11 2KN0 0 JRNL AUTH M.PELLEGRINI,L.WILLEN,M.PERROUD,D.KRUSHINSKIE,K.STRAUCH, JRNL AUTH 2 H.CUERVO,E.S.DAY,P.SCHNEIDER,T.S.ZHENG JRNL TITL STRUCTURE OF THE EXTRACELLULAR DOMAINS OF HUMAN AND XENOPUS JRNL TITL 2 FN14: IMPLICATIONS IN THE EVOLUTION OF TWEAK AND FN14 JRNL TITL 3 INTERACTIONS. JRNL REF FEBS J. V. 280 1818 2013 JRNL REFN ISSN 1742-464X JRNL PMID 23438059 JRNL DOI 10.1111/FEBS.12206 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB101322. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 140 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 500-700 UM [U-99% 15N] XEFN14-1, REMARK 210 10 MM SODIUM PHOSPHATE-2, 137 MM REMARK 210 SODIUM CHLORIDE-3, 2.7 MM REMARK 210 POTASSIUM CHLORIDE-4, 95% H2O, 5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, SPARKY 3.11 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 LOWEST ENERGY STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLU A 55 REMARK 465 GLN A 56 REMARK 465 LYS A 57 REMARK 465 LEU A 58 REMARK 465 ILE A 59 REMARK 465 SER A 60 REMARK 465 GLU A 61 REMARK 465 GLU A 62 REMARK 465 ASP A 63 REMARK 465 LEU A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 10 -179.57 -64.43 REMARK 500 1 GLU A 11 -177.55 -66.35 REMARK 500 1 MET A 23 -159.48 -133.43 REMARK 500 1 LYS A 29 -79.39 -114.19 REMARK 500 1 ASN A 30 -70.44 -108.98 REMARK 500 1 SER A 31 104.62 -54.59 REMARK 500 1 LYS A 33 38.79 -159.87 REMARK 500 1 CYS A 37 0.55 -59.58 REMARK 500 1 CYS A 40 100.95 -44.56 REMARK 500 1 LYS A 43 -176.43 -59.46 REMARK 500 1 THR A 44 82.44 67.57 REMARK 500 1 ASP A 48 63.14 -161.81 REMARK 500 1 PRO A 50 172.88 -49.38 REMARK 500 1 TRP A 51 153.42 61.75 REMARK 500 2 PRO A 10 -165.98 -59.91 REMARK 500 2 GLU A 11 -177.98 -65.07 REMARK 500 2 SER A 31 126.35 63.48 REMARK 500 2 GLU A 32 -78.92 -139.16 REMARK 500 2 CYS A 37 -4.33 -58.25 REMARK 500 2 CYS A 40 -58.75 -23.74 REMARK 500 2 LYS A 43 132.95 67.33 REMARK 500 2 GLU A 45 66.32 61.16 REMARK 500 2 ASP A 48 37.43 -159.42 REMARK 500 3 CYS A 9 93.02 59.71 REMARK 500 3 PRO A 10 -167.35 -66.23 REMARK 500 3 GLU A 11 -177.29 -62.01 REMARK 500 3 LYS A 29 -56.33 -131.66 REMARK 500 3 SER A 31 99.51 60.73 REMARK 500 3 LYS A 33 43.63 -93.32 REMARK 500 3 CYS A 37 -4.58 -58.50 REMARK 500 3 LYS A 43 161.62 64.97 REMARK 500 3 PRO A 47 47.75 -84.21 REMARK 500 4 CYS A 9 129.70 63.55 REMARK 500 4 PRO A 10 -166.19 -62.46 REMARK 500 4 CYS A 37 1.99 -62.70 REMARK 500 4 PRO A 41 -172.97 -54.67 REMARK 500 4 LYS A 43 128.92 -177.30 REMARK 500 4 ASP A 48 40.31 -148.22 REMARK 500 4 TRP A 51 116.93 61.95 REMARK 500 4 TRP A 53 89.91 67.41 REMARK 500 5 PRO A 10 -174.26 -55.89 REMARK 500 5 GLU A 11 179.10 -55.83 REMARK 500 5 ALA A 14 148.42 -178.53 REMARK 500 5 CYS A 28 -171.98 -67.32 REMARK 500 5 LYS A 29 -61.33 -131.90 REMARK 500 5 ASN A 30 -41.57 -176.45 REMARK 500 5 CYS A 37 2.36 -65.70 REMARK 500 5 THR A 44 71.53 53.42 REMARK 500 5 GLN A 46 108.32 -56.95 REMARK 500 5 ASP A 48 43.49 -158.96 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KMZ RELATED DB: PDB REMARK 900 HUMAN FN14 SOLUTION NMR STRUCTURE DBREF 2KN0 A 5 54 UNP Q6SIX7 Q6SIX7_XENLA 23 72 SEQADV 2KN0 GLU A 55 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 GLN A 56 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 LYS A 57 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 LEU A 58 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 ILE A 59 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 SER A 60 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 GLU A 61 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 GLU A 62 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 ASP A 63 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 LEU A 64 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 HIS A 65 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 HIS A 66 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 HIS A 67 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 HIS A 68 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 HIS A 69 UNP Q6SIX7 EXPRESSION TAG SEQADV 2KN0 HIS A 70 UNP Q6SIX7 EXPRESSION TAG SEQRES 1 A 66 SER GLN GLY GLU CYS PRO GLU GLY ARG ALA TYR SER GLN SEQRES 2 A 66 ASP LEU GLY LYS CYS MET GLU CYS SER VAL CYS LYS ASN SEQRES 3 A 66 SER GLU LYS SER ASP PHE CYS GLN ASN CYS PRO SER LYS SEQRES 4 A 66 THR GLU GLN PRO ASP PHE PRO TRP ILE TRP VAL GLU GLN SEQRES 5 A 66 LYS LEU ILE SER GLU GLU ASP LEU HIS HIS HIS HIS HIS SEQRES 6 A 66 HIS SHEET 1 A 2 ARG A 13 SER A 16 0 SHEET 2 A 2 LYS A 21 GLU A 24 -1 O MET A 23 N ALA A 14 SSBOND 1 CYS A 9 CYS A 22 1555 1555 2.03 SSBOND 2 CYS A 25 CYS A 40 1555 1555 2.03 SSBOND 3 CYS A 28 CYS A 37 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000