PDB Short entry for 2KNO HEADER HYDROLASE 27-AUG-09 2KNO TITLE NMR SOLUTION STRUCTURE OF SH2 DOMAIN OF THE HUMAN TENSIN LIKE C1 TITLE 2 DOMAIN CONTAINING PHOSPHATASE (TENC1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENSIN-LIKE C1 DOMAIN-CONTAINING PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SRC HOMOLOG 2 DOMAIN OF TENC1, UNP RESIDUES 1135-1249; COMPND 5 SYNONYM: C1 DOMAIN-CONTAINING PHOSPHATASE AND TENSIN HOMOLOG, C1-TEN, COMPND 6 TENSIN-2; COMPND 7 EC: 3.1.3.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1075, TENC1, TENSIN LIKE C1 DOMAIN CONTAINING PHOSPHATASE, SOURCE 6 TNS2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SH2 DOMAIN, TENC1, SOLUTION STRUCTURE, TENSIN2, CELL JUNCTION, CELL KEYWDS 2 MEMBRANE, HYDROLASE, MEMBRANE, METAL-BINDING, PHORBOL-ESTER BINDING, KEYWDS 3 PHOSPHOPROTEIN, PROTEIN PHOSPHATASE, ZINC-FINGER EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.CHEN,R.FENG,C.LIU,G.ZHU REVDAT 1 01-SEP-10 2KNO 0 JRNL AUTH L.CHEN,C.LIU,R.FENG,G.ZHU JRNL TITL NMR SOLUTION STRUCTURE OF SH2 DOMAIN OF THE HUMAN TENSIN JRNL TITL 2 LIKE C1 DOMAIN CONTAINING PHOSPHATASE (TENC1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KNO COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB101346. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-100% 13C] SH2-1, 100MM REMARK 210 SODIUM ACETATE-2, 100MM SODIUM REMARK 210 CHLORIDE-3, 100% D2O; 1MM [U-100% REMARK 210 15N] SH2-4, 100MM SODIUM ACETATE- REMARK 210 5, 100MM SODIUM CHLORIDE-6, 90% REMARK 210 H2O/10% D2O; 1MM [U-100% 13C; U- REMARK 210 100% 15N] SH2-7, 100MM SODIUM REMARK 210 ACETATE-8, 100MM SODIUM CHLORIDE- REMARK 210 9, 90% H2O/10% D2O; 1MM SH2-10, REMARK 210 100MM SODIUM ACETATE-11, 100MM REMARK 210 SODIUM CHLORIDE-12, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 2D 1H-1H NOESY; 3D HNCO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRPIPE, SPARKY, CYANA REMARK 210 METHOD USED : WATER REFINE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 14 -50.72 -122.69 REMARK 500 1 SER A 68 -43.20 -134.45 REMARK 500 1 LYS A 73 81.70 -158.15 REMARK 500 1 PRO A 76 -78.43 -32.47 REMARK 500 1 LYS A 91 -73.34 -73.74 REMARK 500 1 ILE A 119 -64.02 -90.28 REMARK 500 2 HIS A 7 -50.47 -129.40 REMARK 500 2 SER A 8 73.64 55.38 REMARK 500 2 SER A 9 45.57 -77.30 REMARK 500 2 PRO A 25 21.55 -73.88 REMARK 500 2 PRO A 71 82.39 -69.62 REMARK 500 2 SER A 100 -148.00 -148.40 REMARK 500 2 GLU A 101 123.93 80.75 REMARK 500 3 HIS A 3 -66.12 -105.88 REMARK 500 3 SER A 9 -62.27 70.78 REMARK 500 3 ALA A 69 -3.04 74.56 REMARK 500 3 PRO A 99 32.93 -90.04 REMARK 500 3 SER A 100 -147.65 -92.69 REMARK 500 3 GLU A 101 -55.52 -152.62 REMARK 500 4 HIS A 3 149.35 72.82 REMARK 500 4 HIS A 7 113.69 70.90 REMARK 500 4 SER A 8 103.16 71.51 REMARK 500 4 LEU A 11 -14.83 73.80 REMARK 500 4 ARG A 14 -74.52 -127.09 REMARK 500 4 LYS A 73 -61.25 -127.54 REMARK 500 4 SER A 100 -83.99 156.21 REMARK 500 4 GLU A 101 -59.55 -144.50 REMARK 500 4 LYS A 130 -166.53 -77.22 REMARK 500 5 HIS A 7 -83.56 -79.53 REMARK 500 5 SER A 8 -102.98 51.86 REMARK 500 5 SER A 9 -148.62 42.88 REMARK 500 5 ASP A 17 106.85 -55.71 REMARK 500 5 SER A 51 -62.24 -142.28 REMARK 500 5 TRP A 72 127.74 -34.71 REMARK 500 5 SER A 129 11.79 59.05 REMARK 500 6 HIS A 7 -66.50 68.13 REMARK 500 6 SER A 51 -45.71 -150.61 REMARK 500 6 SER A 100 -19.14 -145.40 REMARK 500 6 ILE A 119 -64.33 -95.18 REMARK 500 6 SER A 129 18.26 58.95 REMARK 500 7 SER A 100 -82.76 -85.79 REMARK 500 7 GLU A 101 97.26 46.95 REMARK 500 8 SER A 8 -53.77 65.12 REMARK 500 8 SER A 16 40.46 -103.69 REMARK 500 8 PHE A 104 -72.59 -79.14 REMARK 500 8 HIS A 114 -26.07 77.87 REMARK 500 8 ILE A 119 -71.15 -95.02 REMARK 500 9 HIS A 4 142.41 73.22 REMARK 500 9 HIS A 5 86.15 -171.21 REMARK 500 10 HIS A 4 104.77 66.56 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 82 0.10 SIDE CHAIN REMARK 500 1 ARG A 126 0.07 SIDE CHAIN REMARK 500 3 ARG A 126 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 19 THR A 18 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 2KNO A 17 131 UNP Q63HR2 TENC1_HUMAN 1135 1249 SEQADV 2KNO MET A 1 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO HIS A 2 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO HIS A 3 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO HIS A 4 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO HIS A 5 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO HIS A 6 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO HIS A 7 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO SER A 8 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO SER A 9 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO GLY A 10 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO LEU A 11 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO VAL A 12 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO PRO A 13 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO ARG A 14 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO GLY A 15 UNP Q63HR2 EXPRESSION TAG SEQADV 2KNO SER A 16 UNP Q63HR2 EXPRESSION TAG SEQRES 1 A 131 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 131 ARG GLY SER ASP THR SER LYS PHE TRP TYR LYS PRO HIS SEQRES 3 A 131 LEU SER ARG ASP GLN ALA ILE ALA LEU LEU LYS ASP LYS SEQRES 4 A 131 ASP PRO GLY ALA PHE LEU ILE ARG ASP SER HIS SER PHE SEQRES 5 A 131 GLN GLY ALA TYR GLY LEU ALA LEU LYS VAL ALA THR PRO SEQRES 6 A 131 PRO PRO SER ALA GLN PRO TRP LYS GLY ASP PRO VAL GLU SEQRES 7 A 131 GLN LEU VAL ARG HIS PHE LEU ILE GLU THR GLY PRO LYS SEQRES 8 A 131 GLY VAL LYS ILE LYS GLY CYS PRO SER GLU PRO TYR PHE SEQRES 9 A 131 GLY SER LEU SER ALA LEU VAL SER GLN HIS SER ILE SER SEQRES 10 A 131 PRO ILE SER LEU PRO CYS CYS LEU ARG ILE PRO SER LYS SEQRES 11 A 131 ASP HELIX 1 1 THR A 18 TYR A 23 1 6 HELIX 2 2 SER A 28 LYS A 37 1 10 HELIX 3 3 ASP A 75 LEU A 80 1 6 HELIX 4 4 SER A 106 GLN A 113 1 8 SHEET 1 A 4 PHE A 44 ASP A 48 0 SHEET 2 A 4 ALA A 55 LYS A 61 -1 O GLY A 57 N ARG A 47 SHEET 3 A 4 VAL A 81 GLU A 87 -1 O ILE A 86 N TYR A 56 SHEET 4 A 4 ILE A 95 LYS A 96 -1 O LYS A 96 N LEU A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000