PDB Short entry for 2KOO HEADER TRANSPORT PROTEIN 29-SEP-09 2KOO TITLE NMR SOLUTION STRUCTURES OF HEXANOYL-ACP FROM THE STREPTOMYCES TITLE 2 COELICOLOR FATTY ACID SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL CARRIER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 GENE: ACPP, SCO2389, SC4A7.17; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SC-APOFAS-PET21 KEYWDS ACYL CARRIER PROTEIN, INTERMEDIATE BINDING, FATTY ACID SYNTHASE, KEYWDS 2 TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.PLOSKON,C.J.ARTHUR,M.P.CRUMP REVDAT 2 16-MAR-22 2KOO 1 REMARK LINK REVDAT 1 18-AUG-10 2KOO 0 JRNL AUTH E.PLOSKON,C.J.ARTHUR,A.L.KANARI,P.WATTANA-AMORN,C.WILLIAMS, JRNL AUTH 2 J.CROSBY,T.J.SIMPSON,C.L.WILLIS,M.P.CRUMP JRNL TITL RECOGNITION OF INTERMEDIATE FUNCTIONALITY BY ACYL CARRIER JRNL TITL 2 PROTEIN OVER A COMPLETE CYCLE OF FATTY ACID BIOSYNTHESIS JRNL REF CHEM.BIOL. V. 17 776 2010 JRNL REFN ISSN 1074-5521 JRNL PMID 20659690 JRNL DOI 10.1016/J.CHEMBIOL.2010.05.024 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE, NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 20 BEST STRUCTURES FROM LAST ITERATION REMARK 3 WERE SELECTED FOR WATER REFINEMENT. WATER REFINED STRUCTURES REMARK 3 WERE CALCULATED USING THE SLIGHTLY MODIFIED REFINEMENT SCRIPT REMARK 3 APPLIED TO THE RECOORD DATABASE. REMARK 4 REMARK 4 2KOO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000101381. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM POTASSIUM PHOSPHATE-1, REMARK 210 0.5MM SODIUM AZIDE-2, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 13C,15N FILTERED NOESY; 2D 13C, REMARK 210 15N FILTERED TOCSY; 2D F2 13C REMARK 210 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRPIPE, CCPN_ANALYSIS REMARK 210 1. REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3 TYR A 75 CE1 TYR A 75 CZ -0.083 REMARK 500 9 PHE A 32 CZ PHE A 32 CE2 0.131 REMARK 500 10 PHE A 32 CZ PHE A 32 CE2 0.138 REMARK 500 15 PHE A 32 CZ PHE A 32 CE2 0.116 REMARK 500 19 TYR A 75 CE1 TYR A 75 CZ 0.079 REMARK 500 19 TYR A 75 CZ TYR A 75 CE2 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 3 -168.00 -128.90 REMARK 500 1 VAL A 26 96.55 -64.10 REMARK 500 1 ASP A 34 -47.13 -147.08 REMARK 500 1 LEU A 36 -80.85 -69.60 REMARK 500 1 ASP A 37 -25.20 163.87 REMARK 500 1 VAL A 38 121.49 -29.82 REMARK 500 1 SER A 40 -12.92 75.58 REMARK 500 1 LYS A 57 95.81 68.03 REMARK 500 1 LYS A 67 9.97 -46.70 REMARK 500 2 VAL A 26 94.78 -62.68 REMARK 500 2 ASP A 34 -63.07 176.52 REMARK 500 2 LEU A 36 -90.64 -93.27 REMARK 500 2 ASP A 37 62.61 151.30 REMARK 500 2 SER A 40 -25.82 74.16 REMARK 500 2 LYS A 57 109.88 73.59 REMARK 500 2 LEU A 66 39.65 -91.50 REMARK 500 2 LYS A 67 -8.21 -43.55 REMARK 500 3 VAL A 26 102.14 -59.65 REMARK 500 3 THR A 33 46.14 -89.93 REMARK 500 3 ASP A 34 -52.85 -154.13 REMARK 500 3 LEU A 36 -78.66 -70.41 REMARK 500 3 ASP A 37 67.83 135.17 REMARK 500 3 SER A 40 -23.49 68.06 REMARK 500 3 ASP A 55 17.78 58.30 REMARK 500 3 LYS A 57 109.78 67.35 REMARK 500 3 LEU A 66 -60.60 -92.38 REMARK 500 3 LYS A 67 -30.35 56.25 REMARK 500 4 THR A 3 -159.61 -114.25 REMARK 500 4 VAL A 26 93.40 -64.03 REMARK 500 4 ASP A 34 -67.18 174.28 REMARK 500 4 LEU A 36 -93.26 -84.36 REMARK 500 4 ASP A 37 63.97 156.28 REMARK 500 4 SER A 40 -6.15 72.18 REMARK 500 4 LYS A 57 103.95 72.55 REMARK 500 4 LYS A 67 -28.03 -39.44 REMARK 500 4 GLN A 80 159.33 -48.55 REMARK 500 5 VAL A 26 83.99 -65.56 REMARK 500 5 SER A 31 104.99 -52.08 REMARK 500 5 THR A 33 44.59 -77.77 REMARK 500 5 ASP A 34 -61.55 -171.42 REMARK 500 5 LEU A 36 -88.07 -92.78 REMARK 500 5 ASP A 37 69.34 144.94 REMARK 500 5 SER A 40 -25.40 68.16 REMARK 500 5 LYS A 57 92.69 64.17 REMARK 500 5 LEU A 66 37.99 -99.01 REMARK 500 5 LYS A 67 -29.59 -35.22 REMARK 500 6 THR A 3 -169.52 -118.35 REMARK 500 6 VAL A 26 97.55 -68.60 REMARK 500 6 LYS A 27 -93.57 -102.61 REMARK 500 6 LEU A 28 -57.33 -148.53 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 53 0.10 SIDE CHAIN REMARK 500 7 ARG A 53 0.08 SIDE CHAIN REMARK 500 8 TYR A 75 0.06 SIDE CHAIN REMARK 500 13 ARG A 53 0.10 SIDE CHAIN REMARK 500 14 ARG A 53 0.08 SIDE CHAIN REMARK 500 15 ARG A 53 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SXH A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KOP RELATED DB: PDB REMARK 900 ACP WITH OTHER BOUND INTERMEDIATE REMARK 900 RELATED ID: 2KOQ RELATED DB: PDB REMARK 900 ACP WITH OTHER BOUND INTERMEDIATE REMARK 900 RELATED ID: 2KOR RELATED DB: PDB REMARK 900 ACP WITH OTHER BOUND INTERMEDIATE REMARK 900 RELATED ID: 2KOS RELATED DB: PDB REMARK 900 ACP WITH OTHER BOUND INTERMEDIATE DBREF 2KOO A 1 81 UNP P72393 P72393_STRCO 2 82 SEQRES 1 A 81 ALA ALA THR GLN GLU GLU ILE VAL ALA GLY LEU ALA GLU SEQRES 2 A 81 ILE VAL ASN GLU ILE ALA GLY ILE PRO VAL GLU ASP VAL SEQRES 3 A 81 LYS LEU ASP LYS SER PHE THR ASP ASP LEU ASP VAL ASP SEQRES 4 A 81 SER LEU SER MET VAL GLU VAL VAL VAL ALA ALA GLU GLU SEQRES 5 A 81 ARG PHE ASP VAL LYS ILE PRO ASP ASP ASP VAL LYS ASN SEQRES 6 A 81 LEU LYS THR VAL GLY ASP ALA THR LYS TYR ILE LEU ASP SEQRES 7 A 81 HIS GLN ALA HET SXH A 101 59 HETNAM SXH S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY) HETNAM 2 SXH BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] HEXANETHIOATE FORMUL 2 SXH C17 H33 N2 O8 P S HELIX 1 1 THR A 3 ALA A 19 1 17 HELIX 2 2 SER A 40 ASP A 55 1 16 HELIX 3 3 PRO A 59 LYS A 64 1 6 HELIX 4 4 ASN A 65 LYS A 67 5 3 HELIX 5 5 THR A 68 HIS A 79 1 12 LINK OG SER A 40 P24 SXH A 101 1555 1555 1.58 SITE 1 AC1 12 PHE A 32 THR A 33 SER A 40 MET A 43 SITE 2 AC1 12 VAL A 44 ASP A 60 VAL A 63 LYS A 64 SITE 3 AC1 12 LEU A 66 LYS A 67 THR A 68 ALA A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000