PDB Short entry for 2KSD HEADER TRANSFERASE 02-JAN-10 2KSD TITLE BACKBONE STRUCTURE OF THE MEMBRANE DOMAIN OF E. COLI HISTIDINE KINASE TITLE 2 RECEPTOR ARCB, CENTER FOR STRUCTURES OF MEMBRANE PROTEINS (CSMP) TITLE 3 TARGET 4310C COMPND MOL_ID: 1; COMPND 2 MOLECULE: AEROBIC RESPIRATION CONTROL SENSOR PROTEIN ARCB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-115; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ARCB, B3210, JW5536; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PIVEX2.3 KEYWDS METHODS DEVELOPMENT, HISTIDINE KINASE RECEPTOR, MEMBRANE DOMAIN, TWO- KEYWDS 2 HELICAL HAIRPIN, CELL-FREE SYNTHESIS, CELL INNER MEMBRANE, CELL KEYWDS 3 MEMBRANE, KINASE, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 4 TRANSFERASE, TRANSMEMBRANE, TWO-COMPONENT REGULATORY SYSTEM, KEYWDS 5 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, CENTER FOR KEYWDS 6 STRUCTURES OF MEMBRANE PROTEINS, CSMP EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.MASLENNIKOV,C.KLAMMT,E.HWANG,G.KEFALA,W.KWIATKOWSKI,Y.JEON,S.CHOE, AUTHOR 2 CENTER FOR STRUCTURES OF MEMBRANE PROTEINS (CSMP) REVDAT 2 05-DEC-12 2KSD 1 JRNL VERSN REVDAT 1 02-MAR-10 2KSD 0 JRNL AUTH I.MASLENNIKOV,C.KLAMMT,E.HWANG,G.KEFALA,M.OKAMURA, JRNL AUTH 2 L.ESQUIVIES,K.MORS,C.GLAUBITZ,W.KWIATKOWSKI,Y.H.JEON,S.CHOE JRNL TITL MEMBRANE DOMAIN STRUCTURES OF THREE CLASSES OF HISTIDINE JRNL TITL 2 KINASE RECEPTORS BY CELL-FREE EXPRESSION AND RAPID NMR JRNL TITL 3 ANALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 10902 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20498088 JRNL DOI 10.1073/PNAS.1001656107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.6 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-10. REMARK 100 THE RCSB ID CODE IS RCSB101514. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM DSS, 20 MM SODIUM REMARK 210 ACETATE, 200 MM 1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC- REMARK 210 (1-GLYCEROL)], 10 MM SODIUM CHLORIDE, 0.5 MM [U-98% 13C; U-98% REMARK 210 15N] PROTEIN, 95% H2O/5% D2O; 0.5 MM DSS, 100 MM 1-MYRISTOYL-2- REMARK 210 HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)], 20 MM MES- REMARK 210 BISTRIS, 0.3 MM [U-99% 13C; U-99% 15N] PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.0.6, TOPSPIN 2.1, CARA REMARK 210 1.8.4, MOLMOL 2K.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 3 REMARK 465 ILE A 4 REMARK 465 ARG A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 TYR A 10 REMARK 465 TYR A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 90 REMARK 465 VAL A 91 REMARK 465 GLN A 92 REMARK 465 LYS A 93 REMARK 465 LEU A 94 REMARK 465 GLU A 95 REMARK 465 GLU A 96 REMARK 465 MET A 97 REMARK 465 ARG A 98 REMARK 465 GLU A 99 REMARK 465 ARG A 100 REMARK 465 ASP A 101 REMARK 465 LEU A 102 REMARK 465 SER A 103 REMARK 465 LEU A 104 REMARK 465 ASN A 105 REMARK 465 VAL A 106 REMARK 465 GLN A 107 REMARK 465 LEU A 108 REMARK 465 LYS A 109 REMARK 465 ASP A 110 REMARK 465 ASN A 111 REMARK 465 ILE A 112 REMARK 465 ALA A 113 REMARK 465 GLN A 114 REMARK 465 LEU A 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 39 HG1 THR A 43 1.51 REMARK 500 O MET A 44 HD1 HIS A 47 1.52 REMARK 500 HG SER A 24 OE2 GLU A 82 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 18 -78.59 -137.75 REMARK 500 1 VAL A 21 -51.39 -128.89 REMARK 500 1 PHE A 23 65.32 32.00 REMARK 500 1 SER A 24 -155.02 -140.05 REMARK 500 1 MET A 25 72.25 74.51 REMARK 500 1 HIS A 47 67.15 -66.90 REMARK 500 1 VAL A 50 -69.29 -141.93 REMARK 500 1 GLU A 51 -64.02 -157.56 REMARK 500 1 SER A 52 80.91 -175.70 REMARK 500 1 ILE A 56 71.96 42.00 REMARK 500 1 ARG A 57 141.03 82.25 REMARK 500 1 GLN A 79 105.13 -45.66 REMARK 500 1 LEU A 80 64.05 -69.84 REMARK 500 1 GLU A 82 -67.55 63.00 REMARK 500 1 GLN A 85 -73.99 -137.35 REMARK 500 1 ARG A 86 81.62 58.01 REMARK 500 2 LYS A 17 111.90 -173.41 REMARK 500 2 LEU A 18 -66.45 -140.56 REMARK 500 2 LEU A 20 59.89 38.97 REMARK 500 2 VAL A 21 -19.76 88.12 REMARK 500 2 SER A 24 177.77 65.88 REMARK 500 2 ILE A 53 -57.02 -175.50 REMARK 500 2 ASP A 54 -62.39 -134.47 REMARK 500 2 SER A 58 -83.10 -65.78 REMARK 500 2 LEU A 80 38.02 35.69 REMARK 500 2 GLU A 81 -76.13 -146.96 REMARK 500 2 SER A 83 58.81 -158.43 REMARK 500 2 ARG A 86 -67.88 -160.89 REMARK 500 2 LEU A 87 -56.56 -166.30 REMARK 500 3 LEU A 20 58.68 -66.76 REMARK 500 3 VAL A 21 -58.64 -147.22 REMARK 500 3 MET A 25 -65.43 63.39 REMARK 500 3 LEU A 46 75.36 -69.37 REMARK 500 3 GLN A 49 -72.24 -126.51 REMARK 500 3 SER A 52 -157.99 59.66 REMARK 500 3 VAL A 55 -65.26 67.09 REMARK 500 3 LEU A 80 112.03 -35.68 REMARK 500 3 GLU A 81 -68.40 -162.87 REMARK 500 3 SER A 83 -156.88 -127.11 REMARK 500 3 ARG A 84 55.74 -113.32 REMARK 500 3 LEU A 87 45.01 172.16 REMARK 500 4 MET A 16 -51.77 -140.43 REMARK 500 4 LYS A 17 -165.29 74.66 REMARK 500 4 LEU A 18 -64.56 71.43 REMARK 500 4 LEU A 20 83.08 51.40 REMARK 500 4 VAL A 21 -74.56 -121.02 REMARK 500 4 ARG A 22 -51.94 -174.62 REMARK 500 4 SER A 24 -83.49 -127.27 REMARK 500 4 VAL A 50 68.79 -155.42 REMARK 500 4 ASP A 54 -74.63 -99.87 REMARK 500 REMARK 500 THIS ENTRY HAS 259 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4310C RELATED DB: TARGETDB DBREF 2KSD A 1 115 UNP P0AEC3 ARCB_ECOLI 1 115 SEQRES 1 A 115 MET LYS GLN ILE ARG LEU LEU ALA GLN TYR TYR VAL ASP SEQRES 2 A 115 LEU MET MET LYS LEU GLY LEU VAL ARG PHE SER MET LEU SEQRES 3 A 115 LEU ALA LEU ALA LEU VAL VAL LEU ALA ILE VAL VAL GLN SEQRES 4 A 115 MET ALA VAL THR MET VAL LEU HIS GLY GLN VAL GLU SER SEQRES 5 A 115 ILE ASP VAL ILE ARG SER ILE PHE PHE GLY LEU LEU ILE SEQRES 6 A 115 THR PRO TRP ALA VAL TYR PHE LEU SER VAL VAL VAL GLU SEQRES 7 A 115 GLN LEU GLU GLU SER ARG GLN ARG LEU SER ARG LEU VAL SEQRES 8 A 115 GLN LYS LEU GLU GLU MET ARG GLU ARG ASP LEU SER LEU SEQRES 9 A 115 ASN VAL GLN LEU LYS ASP ASN ILE ALA GLN LEU HELIX 1 1 LEU A 26 LEU A 46 1 21 HELIX 2 2 PHE A 60 GLN A 79 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000