PDB Short entry for 2KUH HEADER METAL BINDING PROTEIN 17-FEB-10 2KUH TITLE HALOTHANE BINDS TO DRUGGABLE SITES IN CALCIUM-CALMODULIN: SOLUTION TITLE 2 STRUCTURE OF HALOTHANE-CAM C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN EF-HANDS 3 AND 4; COMPND 5 SYNONYM: CAM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, SOURCE 6 CAM3, CAMC, CAMIII; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET 15B KEYWDS CALMODULIN, CALCIUM BINDING, VOLATILE ANESTHETIC, HALOTHANE, KEYWDS 2 CYTOSKELETON, ISOPEPTIDE BOND, METHYLATION, PHOSPHOPROTEIN, METAL KEYWDS 3 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR N.JURANIC,S.MACURA,M.V.SIMEONOV,K.A.JONES,A.R.PENHEITER,T.J.HOCK, AUTHOR 2 J.H.STREIFF REVDAT 3 11-DEC-13 2KUH 1 JRNL VERSN REVDAT 2 16-MAR-10 2KUH 1 TITLE REVDAT 1 09-MAR-10 2KUH 0 JRNL AUTH N.O.JURANIC,K.A.JONES,A.R.PENHEITER,T.J.HOCK,J.H.STREIFF JRNL TITL HALOTHANE BINDS TO DRUGGABLE SITES IN THE [CA2+]4-CALMODULIN JRNL TITL 2 (CAM) COMPLEX, BUT DOES NOT INHIBIT [CA2+]4-CAM ACTIVATION JRNL TITL 3 OF KINASE. JRNL REF J. SERB. CHEM. SOC. V. 78 1655 2013 JRNL REFN ISSN 0352-5139 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR MSI XPLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR, 100 STEPS STEEPEST DESCEND - REMARK 3 FINAL REFINEMENT REMARK 4 REMARK 4 2KUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-10. REMARK 100 THE RCSB ID CODE IS RCSB101587. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-99% 13C; U-99% 15N] REMARK 210 CALCIUM ION, 20 MM CALCIUM ION, 20 MM N-{[2-({[1-(4- REMARK 210 CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY] REMARK 210 ACETYL}-2-PHENYLETHYLAMINE, 95% H2O/5% D2O; 2 MM [U-99% 15N] REMARK 210 CALCIUM ION, 20 MM CALCIUM ION, 20 MM N-{[2-({[1-(4- REMARK 210 CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY] REMARK 210 ACETYL}-2-PHENYLETHYLAMINE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HNHA; REMARK 210 2D 1H-15N NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR MSI XPLOR 3.843 REMARK 210 METHOD USED : SIMULATED ANNEALING, CHARMM22 REMARK 210 ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 86 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 5 ARG A 86 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 147 -167.21 56.25 REMARK 500 2 ALA A 147 -163.63 57.03 REMARK 500 3 ALA A 147 -159.09 52.66 REMARK 500 4 ALA A 147 -168.70 56.62 REMARK 500 5 ALA A 147 -162.41 56.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 993 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 135 O REMARK 620 2 ASP A 133 OD1 68.7 REMARK 620 3 ASP A 129 OD1 73.0 74.8 REMARK 620 4 ASP A 131 OD1 135.4 80.7 68.0 REMARK 620 5 ASP A 131 OD2 171.3 119.9 107.3 49.8 REMARK 620 6 GLU A 140 OE2 111.8 132.2 61.3 66.6 62.1 REMARK 620 7 GLU A 140 OE1 79.0 144.8 82.9 115.8 92.4 49.3 REMARK 620 8 ASP A 133 OD2 95.9 46.8 119.2 85.0 91.5 149.5 155.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 992 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 97 OD1 REMARK 620 2 TYR A 99 O 86.6 REMARK 620 3 GLU A 104 OE1 170.9 84.5 REMARK 620 4 ASP A 93 OD1 100.5 88.3 81.0 REMARK 620 5 GLU A 104 OE2 139.9 133.4 49.1 81.9 REMARK 620 6 ASP A 95 OD1 72.8 131.4 114.7 54.7 76.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 992 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 993 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HLT A 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KUG RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF THE SAME COMPLEX REMARK 900 RELATED ID: 16765 RELATED DB: BMRB DBREF 2KUH A 82 148 UNP P62158 CALM_HUMAN 83 149 SEQRES 1 A 67 GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL PHE ASP LYS SEQRES 2 A 67 ASP GLY ASN GLY TYR ILE SER ALA ALA GLU LEU ARG HIS SEQRES 3 A 67 VAL MET THR ASN LEU GLY GLU LYS LEU THR ASP GLU GLU SEQRES 4 A 67 VAL ASP GLU MET ILE ARG GLU ALA ASP ILE ASP GLY ASP SEQRES 5 A 67 GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN MET MET THR SEQRES 6 A 67 ALA LYS HET CA A 992 1 HET CA A 993 1 HET HLT A 150 8 HETNAM CA CALCIUM ION HETNAM HLT 2-BROMO-2-CHLORO-1,1,1-TRIFLUOROETHANE FORMUL 2 CA 2(CA 2+) FORMUL 4 HLT C2 H BR CL F3 HELIX 1 1 GLU A 82 ASP A 93 1 12 HELIX 2 2 SER A 101 GLY A 113 1 13 HELIX 3 3 THR A 117 ASP A 129 1 13 HELIX 4 4 TYR A 138 THR A 146 1 9 SHEET 1 A 2 TYR A 99 ILE A 100 0 SHEET 2 A 2 VAL A 136 ASN A 137 -1 O VAL A 136 N ILE A 100 LINK O GLN A 135 CA CA A 993 1555 1555 2.48 LINK OD1 ASP A 133 CA CA A 993 1555 1555 2.50 LINK OD1 ASN A 97 CA CA A 992 1555 1555 2.51 LINK O TYR A 99 CA CA A 992 1555 1555 2.55 LINK OD1 ASP A 129 CA CA A 993 1555 1555 2.56 LINK OD1 ASP A 131 CA CA A 993 1555 1555 2.56 LINK OE1 GLU A 104 CA CA A 992 1555 1555 2.56 LINK OD2 ASP A 131 CA CA A 993 1555 1555 2.58 LINK OE2 GLU A 140 CA CA A 993 1555 1555 2.58 LINK OE1 GLU A 140 CA CA A 993 1555 1555 2.59 LINK OD1 ASP A 93 CA CA A 992 1555 1555 2.63 LINK OE2 GLU A 104 CA CA A 992 1555 1555 2.63 LINK OD1 ASP A 95 CA CA A 992 1555 1555 2.80 LINK OD2 ASP A 133 CA CA A 993 1555 1555 2.87 SITE 1 AC1 5 ASP A 93 ASP A 95 ASN A 97 TYR A 99 SITE 2 AC1 5 GLU A 104 SITE 1 AC2 5 ASP A 129 ASP A 131 ASP A 133 GLN A 135 SITE 2 AC2 5 GLU A 140 SITE 1 AC3 4 MET A 109 MET A 124 GLU A 127 MET A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000