PDB Short entry for 2KV4 HEADER HORMONE 08-MAR-10 2KV4 TITLE EGF COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-32A KEYWDS EPITHERMAL GROWTH FACTOR, EGF-LIKE DOMAIN, HORMONE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.W.HUANG,S.K.MOHAN,C.YU REVDAT 3 14-JUN-23 2KV4 1 REMARK REVDAT 2 26-FEB-20 2KV4 1 REMARK REVDAT 1 23-FEB-11 2KV4 0 JRNL AUTH H.W.HUANG,S.K.MOHAN,C.YU JRNL TITL THE NMR SOLUTION STRUCTURE OF HUMAN EPIDERMAL GROWTH FACTOR JRNL TITL 2 (HEGF) AT PHYSIOLOGICAL PH AND ITS INTERACTIONS WITH SURAMIN JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 402 705 2010 JRNL REFN ISSN 0006-291X JRNL PMID 21029725 JRNL DOI 10.1016/J.BBRC.2010.10.089 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.1, ARIA 1.1 REMARK 3 AUTHORS : MICHAEL NILGES, INSTITUT PASTEUR (ARIA), MICHAEL REMARK 3 NILGES, INSTITUT PASTEUR (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA/CNS REMARK 4 REMARK 4 2KV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000101610. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.07 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN-1, 50 MM SODIUM REMARK 210 PHOSPHATE-2, 20 MM SODIUM REMARK 210 CHLORIDE-3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HCCH-TOCSY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA ILE A 38 HA CYS A 42 1.23 REMARK 500 HA ILE A 23 H LYS A 28 1.24 REMARK 500 OD1 ASN A 32 HZ3 LYS A 48 1.55 REMARK 500 O ASN A 1 HG SER A 2 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3 TYR A 29 CE1 TYR A 29 CZ 0.088 REMARK 500 3 TYR A 29 CZ TYR A 29 CE2 -0.094 REMARK 500 9 TYR A 22 CE1 TYR A 22 CZ 0.127 REMARK 500 9 TYR A 22 CZ TYR A 22 CE2 -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 7 -93.20 -33.10 REMARK 500 1 CYS A 14 -154.39 -123.03 REMARK 500 1 LEU A 15 -84.62 -113.56 REMARK 500 1 ASP A 17 -51.37 170.05 REMARK 500 1 TYR A 22 -31.29 177.47 REMARK 500 1 ILE A 23 -93.11 -24.68 REMARK 500 1 GLU A 24 36.32 70.41 REMARK 500 1 CYS A 33 -80.66 -73.16 REMARK 500 1 GLU A 40 -53.24 71.48 REMARK 500 1 ARG A 41 48.77 -153.12 REMARK 500 1 CYS A 42 94.36 58.95 REMARK 500 1 GLN A 43 13.26 -168.01 REMARK 500 1 ARG A 45 176.25 69.06 REMARK 500 2 SER A 2 74.71 55.81 REMARK 500 2 PRO A 7 -81.90 -66.76 REMARK 500 2 HIS A 10 -60.86 -102.39 REMARK 500 2 LEU A 15 -72.38 -121.29 REMARK 500 2 ASP A 17 -50.08 170.93 REMARK 500 2 TYR A 22 -23.04 90.32 REMARK 500 2 CYS A 33 -104.88 -89.09 REMARK 500 2 VAL A 35 93.23 -62.51 REMARK 500 2 GLU A 40 -42.52 71.82 REMARK 500 2 ARG A 41 -45.60 -138.34 REMARK 500 2 CYS A 42 89.72 151.56 REMARK 500 2 GLN A 43 23.54 171.93 REMARK 500 2 ARG A 45 -157.91 61.85 REMARK 500 3 SER A 2 76.12 63.18 REMARK 500 3 ASP A 3 74.74 55.44 REMARK 500 3 GLU A 5 -93.73 44.74 REMARK 500 3 CYS A 6 129.00 74.48 REMARK 500 3 LEU A 15 -84.37 -101.81 REMARK 500 3 ASP A 17 15.58 91.66 REMARK 500 3 MET A 21 110.43 -165.83 REMARK 500 3 TYR A 22 -48.17 -157.85 REMARK 500 3 ILE A 23 81.54 -1.34 REMARK 500 3 CYS A 33 -94.60 -83.24 REMARK 500 3 VAL A 35 78.05 -66.09 REMARK 500 3 GLU A 40 -47.80 75.84 REMARK 500 3 ARG A 41 -30.91 -147.10 REMARK 500 3 CYS A 42 103.35 158.05 REMARK 500 3 GLN A 43 16.95 -177.78 REMARK 500 3 ARG A 45 174.86 66.78 REMARK 500 3 ASP A 46 51.39 -118.70 REMARK 500 4 SER A 2 79.77 -166.93 REMARK 500 4 ASP A 3 95.31 59.63 REMARK 500 4 ASP A 17 -58.17 171.41 REMARK 500 4 TYR A 22 -73.22 -156.61 REMARK 500 4 ILE A 23 90.70 -64.11 REMARK 500 4 ASP A 27 56.52 73.65 REMARK 500 4 TYR A 29 102.42 -166.43 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 TYR A 22 0.09 SIDE CHAIN REMARK 500 9 TYR A 22 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16768 RELATED DB: BMRB DBREF 2KV4 A 1 53 UNP Q6QBS2 Q6QBS2_HUMAN 1 53 SEQRES 1 A 53 ASN SER ASP SER GLU CYS PRO LEU SER HIS ASP GLY TYR SEQRES 2 A 53 CYS LEU HIS ASP GLY VAL CYS MET TYR ILE GLU ALA LEU SEQRES 3 A 53 ASP LYS TYR ALA CYS ASN CYS VAL VAL GLY TYR ILE GLY SEQRES 4 A 53 GLU ARG CYS GLN TYR ARG ASP LEU LYS TRP TRP GLU LEU SEQRES 5 A 53 ARG HELIX 1 1 CYS A 6 ASP A 11 1 6 SSBOND 1 CYS A 6 CYS A 20 1555 1555 2.03 SSBOND 2 CYS A 14 CYS A 31 1555 1555 2.02 SSBOND 3 CYS A 33 CYS A 42 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000