PDB Short entry for 2KWT HEADER VIRAL PROTEIN 19-APR-10 2KWT TITLE SOLUTION STRUCTURE OF NS2 [27-59] COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE NS2-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 836-868; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 333284 KEYWDS HEPATITIS C VIRUS, NS2 DOMAIN, MEMBRANE PROTEIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 36 AUTHOR R.MONTSERRET,R.BARTENSCHLAGER,F.PENIN REVDAT 1 02-MAR-11 2KWT 0 JRNL AUTH V.JIRASKO,R.MONTSERRET,J.Y.LEE,J.GOUTTENOIRE,D.MORADPOUR, JRNL AUTH 2 F.PENIN,R.BARTENSCHLAGER JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF NONSTRUCTURAL PROTEIN 2 JRNL TITL 2 OF THE HEPATITIS C VIRUS REVEAL ITS KEY ROLE AS ORGANIZER OF JRNL TITL 3 VIRION ASSEMBLY. JRNL REF PLOS PATHOG. V. 6 E1001 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 21187906 JRNL DOI 10.1371/JOURNAL.PPAT.1001233 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.19 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KWT COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-10. REMARK 100 THE RCSB ID CODE IS RCSB101671. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM TMS2, 50 V/V [U-2H] TFE, REMARK 210 50 V/V H2O, TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, SPARKY, X-PLOR_NIH 2.19 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 36 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 14 H ALA A 18 1.82 REMARK 500 O ILE A 15 H GLU A 19 1.94 REMARK 500 O LEU A 4 HH21 ARG A 6 1.97 REMARK 500 HE21 GLN A 12 OG1 THR A 16 2.01 REMARK 500 O TRP A 9 H TYR A 13 2.08 REMARK 500 O LEU A 7 H LEU A 11 2.12 REMARK 500 O ALA A 18 H LEU A 22 2.14 REMARK 500 O ILE A 8 H GLN A 12 2.15 REMARK 500 O GLN A 12 H THR A 16 2.15 REMARK 500 O THR A 16 H ALA A 20 2.16 REMARK 500 O LEU A 11 H ILE A 15 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 110.49 -170.37 REMARK 500 1 PHE A 3 139.52 62.52 REMARK 500 1 LEU A 4 -144.96 54.74 REMARK 500 1 ARG A 6 -57.22 -127.08 REMARK 500 1 GLN A 23 34.71 -88.95 REMARK 500 2 PHE A 3 -48.83 -171.94 REMARK 500 2 LEU A 4 -122.09 -84.09 REMARK 500 2 LEU A 29 47.86 -103.91 REMARK 500 3 ARG A 6 -61.24 -122.07 REMARK 500 3 LEU A 22 65.50 -104.79 REMARK 500 3 GLN A 23 54.36 82.65 REMARK 500 3 VAL A 24 37.39 33.09 REMARK 500 3 TRP A 25 62.27 61.05 REMARK 500 3 LEU A 29 59.48 -147.09 REMARK 500 4 PHE A 3 -62.16 66.70 REMARK 500 4 ALA A 5 -66.37 68.81 REMARK 500 4 LEU A 29 36.08 -160.97 REMARK 500 4 ARG A 32 -79.89 60.86 REMARK 500 5 ARG A 6 -64.07 -135.04 REMARK 500 5 ILE A 26 89.81 -158.18 REMARK 500 6 LEU A 2 123.55 68.41 REMARK 500 6 LEU A 4 -133.46 -87.20 REMARK 500 6 ARG A 6 -59.73 -144.71 REMARK 500 6 VAL A 24 45.25 35.48 REMARK 500 6 TRP A 25 49.96 33.58 REMARK 500 7 LEU A 4 -90.73 -130.16 REMARK 500 7 VAL A 24 71.76 33.29 REMARK 500 7 TRP A 25 97.44 63.16 REMARK 500 7 LEU A 29 45.40 -93.40 REMARK 500 8 LEU A 4 -161.24 56.90 REMARK 500 8 ARG A 6 -57.51 -159.71 REMARK 500 8 GLN A 23 34.94 -84.42 REMARK 500 9 ALA A 5 -58.90 -176.27 REMARK 500 9 PRO A 28 -106.58 -77.90 REMARK 500 9 ARG A 32 72.81 59.56 REMARK 500 10 LEU A 4 -155.35 56.38 REMARK 500 10 ARG A 6 -59.86 -122.64 REMARK 500 10 LEU A 22 30.86 -97.24 REMARK 500 10 VAL A 24 57.77 38.03 REMARK 500 10 VAL A 31 73.95 51.89 REMARK 500 11 LEU A 2 97.38 66.80 REMARK 500 11 ALA A 5 123.09 69.90 REMARK 500 11 ARG A 6 -17.12 70.90 REMARK 500 11 GLN A 23 45.04 -82.21 REMARK 500 11 PRO A 28 81.29 -69.18 REMARK 500 11 LEU A 29 37.39 -166.24 REMARK 500 12 LEU A 2 116.27 67.45 REMARK 500 12 PHE A 3 158.32 68.58 REMARK 500 12 LEU A 4 -133.46 54.28 REMARK 500 12 ALA A 5 -81.49 60.44 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 6 0.32 SIDE CHAIN REMARK 500 1 ARG A 17 0.32 SIDE CHAIN REMARK 500 1 ARG A 32 0.31 SIDE CHAIN REMARK 500 2 ARG A 6 0.32 SIDE CHAIN REMARK 500 2 ARG A 17 0.31 SIDE CHAIN REMARK 500 2 ARG A 32 0.31 SIDE CHAIN REMARK 500 3 ARG A 6 0.32 SIDE CHAIN REMARK 500 3 ARG A 17 0.30 SIDE CHAIN REMARK 500 3 ARG A 32 0.29 SIDE CHAIN REMARK 500 4 ARG A 6 0.32 SIDE CHAIN REMARK 500 4 ARG A 17 0.32 SIDE CHAIN REMARK 500 4 ARG A 32 0.32 SIDE CHAIN REMARK 500 5 ARG A 6 0.31 SIDE CHAIN REMARK 500 5 ARG A 17 0.32 SIDE CHAIN REMARK 500 5 ARG A 32 0.32 SIDE CHAIN REMARK 500 6 ARG A 6 0.32 SIDE CHAIN REMARK 500 6 ARG A 17 0.32 SIDE CHAIN REMARK 500 6 ARG A 32 0.32 SIDE CHAIN REMARK 500 7 ARG A 6 0.31 SIDE CHAIN REMARK 500 7 ARG A 17 0.29 SIDE CHAIN REMARK 500 7 ARG A 32 0.29 SIDE CHAIN REMARK 500 8 ARG A 6 0.32 SIDE CHAIN REMARK 500 8 ARG A 17 0.31 SIDE CHAIN REMARK 500 8 ARG A 32 0.32 SIDE CHAIN REMARK 500 9 ARG A 6 0.31 SIDE CHAIN REMARK 500 9 ARG A 17 0.28 SIDE CHAIN REMARK 500 9 ARG A 32 0.32 SIDE CHAIN REMARK 500 10 ARG A 6 0.31 SIDE CHAIN REMARK 500 10 ARG A 17 0.32 SIDE CHAIN REMARK 500 10 ARG A 32 0.23 SIDE CHAIN REMARK 500 11 ARG A 6 0.32 SIDE CHAIN REMARK 500 11 ARG A 17 0.32 SIDE CHAIN REMARK 500 11 ARG A 32 0.32 SIDE CHAIN REMARK 500 12 ARG A 6 0.32 SIDE CHAIN REMARK 500 12 ARG A 17 0.31 SIDE CHAIN REMARK 500 12 ARG A 32 0.32 SIDE CHAIN REMARK 500 13 ARG A 6 0.32 SIDE CHAIN REMARK 500 13 ARG A 17 0.31 SIDE CHAIN REMARK 500 13 ARG A 32 0.31 SIDE CHAIN REMARK 500 14 ARG A 6 0.30 SIDE CHAIN REMARK 500 14 ARG A 17 0.32 SIDE CHAIN REMARK 500 14 ARG A 32 0.31 SIDE CHAIN REMARK 500 15 ARG A 6 0.31 SIDE CHAIN REMARK 500 15 ARG A 17 0.32 SIDE CHAIN REMARK 500 15 ARG A 32 0.31 SIDE CHAIN REMARK 500 16 ARG A 6 0.32 SIDE CHAIN REMARK 500 16 ARG A 17 0.31 SIDE CHAIN REMARK 500 16 ARG A 32 0.32 SIDE CHAIN REMARK 500 17 ARG A 6 0.31 SIDE CHAIN REMARK 500 17 ARG A 17 0.28 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 108 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15579 RELATED DB: BMRB REMARK 900 HCV NS2 [1-27] REMARK 900 RELATED ID: 1JY0 RELATED DB: PDB REMARK 900 HCV NS2 [1-27] REMARK 900 RELATED ID: 16886 RELATED DB: BMRB DBREF 2KWT A 1 33 UNP Q9WMX2 POLG_HCVCO 836 868 SEQRES 1 A 33 LYS LEU PHE LEU ALA ARG LEU ILE TRP TRP LEU GLN TYR SEQRES 2 A 33 PHE ILE THR ARG ALA GLU ALA HIS LEU GLN VAL TRP ILE SEQRES 3 A 33 PRO PRO LEU ASN VAL ARG GLY HELIX 1 1 LEU A 7 GLN A 23 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000