PDB Short entry for 2KZQ HEADER MEMBRANE PROTEIN 21-JUN-10 2KZQ TITLE S34R STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN E2 PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E2[296-331] SEGMENT, UNP RESIDUES 684-719; COMPND 5 SYNONYM: ENVELOPE GLYCOPROTEIN E2, NS1, GP68, GP70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 4 ORGANISM_COMMON: HCV; SOURCE 5 ORGANISM_TAXID: 356411; SOURCE 6 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS MEMBRANE PROTEIN, E2 STRUCTURAL PROTEIN, HCV EXPDTA SOLUTION NMR NUMMDL 36 AUTHOR R.MONTSERRET,J.DUBUISSON,F.PENIN REVDAT 3 14-JUN-23 2KZQ 1 REMARK REVDAT 2 26-FEB-20 2KZQ 1 REMARK REVDAT 1 02-MAR-11 2KZQ 0 JRNL AUTH A.ALBECKA,R.MONTSERRET,T.KREY,A.W.TARR,E.DIESIS,J.K.BALL, JRNL AUTH 2 V.DESCAMPS,G.DUVERLIE,F.REY,F.PENIN,J.DUBUISSON JRNL TITL IDENTIFICATION OF NEW FUNCTIONAL REGIONS IN HEPATITIS C JRNL TITL 2 VIRUS ENVELOPE GLYCOPROTEIN E2. JRNL REF J.VIROL. V. 85 1777 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21147916 JRNL DOI 10.1128/JVI.02170-10 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, X-PLOR NIH REMARK 3 AUTHORS : GODDARD (SPARKY), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101775. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 % TRIFLUOROETHANOL; 50% H2O; REMARK 210 0.01% DSS; TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 36 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 173.27 62.18 REMARK 500 1 ALA A 5 -54.87 -154.26 REMARK 500 1 THR A 8 58.64 -141.56 REMARK 500 2 ALA A 5 19.60 59.15 REMARK 500 2 SER A 7 52.82 -159.84 REMARK 500 2 LEU A 26 33.84 -159.90 REMARK 500 2 ALA A 29 -51.90 -167.35 REMARK 500 2 VAL A 34 45.46 -94.68 REMARK 500 3 PRO A 4 37.64 -85.10 REMARK 500 3 ALA A 5 37.99 -162.04 REMARK 500 3 ALA A 29 -54.11 -155.44 REMARK 500 4 ALA A 5 17.52 59.46 REMARK 500 4 SER A 7 76.69 55.88 REMARK 500 4 VAL A 20 -54.38 -120.09 REMARK 500 4 TYR A 24 42.42 -90.28 REMARK 500 4 LYS A 32 39.11 -90.23 REMARK 500 4 TYR A 33 -49.93 -149.55 REMARK 500 5 PRO A 4 -153.22 -81.74 REMARK 500 5 ALA A 5 -75.11 -167.59 REMARK 500 5 SER A 7 48.04 -99.64 REMARK 500 5 VAL A 34 -91.90 -89.31 REMARK 500 5 VAL A 35 37.95 37.79 REMARK 500 6 LEU A 3 77.98 -151.09 REMARK 500 6 PRO A 4 -154.81 -90.09 REMARK 500 6 ALA A 5 90.25 -161.09 REMARK 500 6 SER A 7 64.58 -151.87 REMARK 500 6 TYR A 22 -49.11 -133.08 REMARK 500 6 SER A 27 -63.98 -99.21 REMARK 500 7 PRO A 4 -157.11 -88.36 REMARK 500 7 ALA A 5 -59.61 -128.93 REMARK 500 7 SER A 7 72.37 54.37 REMARK 500 7 THR A 8 40.07 -86.88 REMARK 500 7 VAL A 35 36.75 -157.04 REMARK 500 8 PRO A 4 -159.85 -89.75 REMARK 500 8 ALA A 5 59.01 -153.23 REMARK 500 8 LEU A 26 43.75 -147.81 REMARK 500 8 ALA A 29 -49.18 -162.74 REMARK 500 8 VAL A 35 70.14 55.63 REMARK 500 9 ALA A 5 -53.60 -162.78 REMARK 500 9 THR A 8 42.54 37.15 REMARK 500 9 TYR A 24 40.53 -95.44 REMARK 500 9 LEU A 26 48.97 -93.88 REMARK 500 9 ALA A 29 -50.07 -167.87 REMARK 500 10 ALA A 5 -54.69 -168.70 REMARK 500 10 LEU A 6 41.12 -104.52 REMARK 500 10 THR A 8 57.56 -115.48 REMARK 500 10 LYS A 32 45.93 -91.60 REMARK 500 10 TYR A 33 -53.59 -146.91 REMARK 500 10 VAL A 34 52.57 -91.67 REMARK 500 10 VAL A 35 22.92 -144.45 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 36 0.32 SIDE CHAIN REMARK 500 2 ARG A 36 0.32 SIDE CHAIN REMARK 500 3 ARG A 36 0.32 SIDE CHAIN REMARK 500 4 ARG A 36 0.30 SIDE CHAIN REMARK 500 5 ARG A 36 0.26 SIDE CHAIN REMARK 500 6 ARG A 36 0.32 SIDE CHAIN REMARK 500 7 ARG A 36 0.30 SIDE CHAIN REMARK 500 8 ARG A 36 0.29 SIDE CHAIN REMARK 500 9 ARG A 36 0.32 SIDE CHAIN REMARK 500 10 ARG A 36 0.32 SIDE CHAIN REMARK 500 11 ARG A 36 0.32 SIDE CHAIN REMARK 500 12 ARG A 36 0.32 SIDE CHAIN REMARK 500 13 ARG A 36 0.32 SIDE CHAIN REMARK 500 14 ARG A 36 0.31 SIDE CHAIN REMARK 500 15 ARG A 36 0.31 SIDE CHAIN REMARK 500 16 ARG A 36 0.32 SIDE CHAIN REMARK 500 17 ARG A 36 0.32 SIDE CHAIN REMARK 500 18 ARG A 36 0.29 SIDE CHAIN REMARK 500 19 ARG A 36 0.32 SIDE CHAIN REMARK 500 20 ARG A 36 0.32 SIDE CHAIN REMARK 500 21 ARG A 36 0.31 SIDE CHAIN REMARK 500 22 ARG A 36 0.32 SIDE CHAIN REMARK 500 23 ARG A 36 0.31 SIDE CHAIN REMARK 500 24 ARG A 36 0.32 SIDE CHAIN REMARK 500 25 ARG A 36 0.31 SIDE CHAIN REMARK 500 26 ARG A 36 0.31 SIDE CHAIN REMARK 500 27 ARG A 36 0.30 SIDE CHAIN REMARK 500 28 ARG A 36 0.31 SIDE CHAIN REMARK 500 29 ARG A 36 0.31 SIDE CHAIN REMARK 500 30 ARG A 36 0.32 SIDE CHAIN REMARK 500 31 ARG A 36 0.32 SIDE CHAIN REMARK 500 32 ARG A 36 0.32 SIDE CHAIN REMARK 500 33 ARG A 36 0.30 SIDE CHAIN REMARK 500 34 ARG A 36 0.31 SIDE CHAIN REMARK 500 35 ARG A 36 0.32 SIDE CHAIN REMARK 500 36 ARG A 36 0.32 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17011 RELATED DB: BMRB DBREF 2KZQ A 1 36 UNP Q99IB8 POLG_HCVJF 684 719 SEQRES 1 A 36 SER ASP LEU PRO ALA LEU SER THR GLY LEU LEU HIS LEU SEQRES 2 A 36 HIS GLN ASN ILE VAL ASP VAL GLN TYR MET TYR GLY LEU SEQRES 3 A 36 SER PRO ALA ILE THR LYS TYR VAL VAL ARG HELIX 1 1 THR A 8 ASP A 19 1 12 HELIX 2 2 LEU A 26 LYS A 32 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000