PDB Short entry for 2L3M HEADER METAL BINDING PROTEIN 16-SEP-10 2L3M TITLE SOLUTION STRUCTURE OF THE PUTATIVE COPPER-ION-BINDING PROTEIN FROM TITLE 2 BACILLUS ANTHRACIS STR. AMES COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-ION-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 198094; SOURCE 5 STRAIN: AMES; SOURCE 6 GENE: BAS3576, BA_3860, GBAA3860, GBAA_3860; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.ZHANG,J.WINSOR,I.DUBROVSKA,W.ANDERSON,I.RADHAKRISHNAN,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 1 12-JAN-11 2L3M 0 JRNL AUTH Y.ZHANG,J.WINSOR,I.DUBROVSKA,W.ANDERSON,I.RADHAKRISHNAN, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L3M COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-10. REMARK 100 THE RCSB ID CODE IS RCSB101914. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 15 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE, 100 REMARK 210 MM SODIUM CHLORIDE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 1 MM EDTA, TRACE REMARK 210 MM PROTEASE INHIBITORS, 1 MM REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; 20 REMARK 210 MM POTASSIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 1 MM EDTA, TRACE REMARK 210 MM PROTEASE INHIBITORS, 1 MM REMARK 210 SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY; 3D REMARK 210 HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CNS, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 55 OD1 ASP A 58 1.62 REMARK 500 H VAL A 11 O GLY A 43 1.63 REMARK 500 O SER A 25 H GLU A 29 1.64 REMARK 500 HZ2 LYS A 37 OE2 GLU A 46 1.64 REMARK 500 O ALA A 22 HG SER A 26 1.65 REMARK 500 O LEU A 7 H VAL A 47 1.68 REMARK 500 H ASN A 2 OD2 ASP A 50 1.71 REMARK 500 HG SER A 1 OE2 GLU A 34 1.71 REMARK 500 O LYS A 57 H ALA A 61 1.71 REMARK 500 O LEU A 9 H VAL A 45 1.73 REMARK 500 H GLU A 12 O ASP A 69 1.74 REMARK 500 H LYS A 37 O GLU A 46 1.75 REMARK 500 O GLU A 12 H ASP A 69 1.76 REMARK 500 H GLN A 39 O THR A 44 1.80 REMARK 500 O GLY A 32 H ASP A 50 1.80 REMARK 500 H LEU A 7 O VAL A 47 1.80 REMARK 500 O CYS A 19 H ILE A 23 1.81 REMARK 500 O LYS A 37 H GLU A 46 1.81 REMARK 500 H LEU A 9 O VAL A 45 1.82 REMARK 500 O GLU A 24 H LYS A 28 1.85 REMARK 500 H GLU A 5 O ILE A 49 1.87 REMARK 500 H ALA A 3 OD1 ASP A 50 1.87 REMARK 500 O GLN A 35 H THR A 48 1.88 REMARK 500 H GLU A 34 O THR A 48 1.88 REMARK 500 O VAL A 60 H GLU A 64 1.89 REMARK 500 HA MET A 4 O ILE A 49 1.94 REMARK 500 O ALA A 22 H SER A 26 1.95 REMARK 500 OG1 THR A 55 H ASP A 58 1.98 REMARK 500 HA GLU A 64 O TYR A 68 1.98 REMARK 500 O VAL A 20 H GLU A 24 1.99 REMARK 500 O GLU A 64 H GLY A 67 2.00 REMARK 500 O GLU A 5 H ILE A 49 2.01 REMARK 500 O GLU A 24 HB2 LYS A 28 2.01 REMARK 500 O ALA A 3 H SER A 51 2.02 REMARK 500 O ASP A 50 H VAL A 54 2.03 REMARK 500 O CYS A 19 HG23 ILE A 23 2.03 REMARK 500 O ASP A 50 H VAL A 53 2.04 REMARK 500 O GLN A 39 H GLY A 43 2.04 REMARK 500 OD1 ASP A 50 H SER A 52 2.07 REMARK 500 O ILE A 59 H ILE A 63 2.10 REMARK 500 O VAL A 62 HG2 GLN A 66 2.10 REMARK 500 OG SER A 26 HE21 GLN A 66 2.11 REMARK 500 O ASN A 21 HG SER A 25 2.11 REMARK 500 O THR A 55 HG12 ILE A 59 2.12 REMARK 500 O LEU A 56 H VAL A 60 2.12 REMARK 500 O HIS A 18 H ALA A 22 2.13 REMARK 500 O ASP A 58 H VAL A 62 2.13 REMARK 500 HA SER A 1 OD2 ASP A 50 2.13 REMARK 500 O ILE A 23 H VAL A 27 2.14 REMARK 500 O SER A 25 HG3 GLU A 29 2.14 REMARK 500 REMARK 500 THIS ENTRY HAS 1129 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 34 -68.73 -91.56 REMARK 500 1 VAL A 53 -62.40 -131.48 REMARK 500 2 MET A 14 178.29 61.49 REMARK 500 2 SER A 15 -52.59 -174.34 REMARK 500 2 VAL A 53 -63.70 -121.19 REMARK 500 3 SER A 15 -76.85 -102.28 REMARK 500 3 VAL A 53 -54.38 -123.31 REMARK 500 4 SER A 15 -81.70 -125.60 REMARK 500 4 CYS A 16 -74.23 -167.82 REMARK 500 4 GLU A 34 -67.99 -90.93 REMARK 500 4 VAL A 53 -70.39 -125.58 REMARK 500 5 CYS A 16 139.69 70.02 REMARK 500 5 VAL A 53 -51.54 -122.52 REMARK 500 6 ALA A 3 102.16 -164.32 REMARK 500 6 CYS A 16 -81.81 -164.38 REMARK 500 7 SER A 15 -72.64 -147.53 REMARK 500 7 GLU A 34 -69.69 -99.47 REMARK 500 7 VAL A 53 -64.41 -120.70 REMARK 500 8 SER A 15 -74.99 -82.08 REMARK 500 8 CYS A 16 -90.32 -160.63 REMARK 500 9 ALA A 3 82.57 60.56 REMARK 500 9 MET A 14 -170.39 62.54 REMARK 500 9 SER A 15 -73.97 -158.66 REMARK 500 9 CYS A 16 -56.41 -153.83 REMARK 500 10 ASN A 2 82.48 60.04 REMARK 500 10 CYS A 16 164.78 72.33 REMARK 500 10 GLU A 34 -69.14 -101.59 REMARK 500 10 VAL A 53 -64.23 -125.39 REMARK 500 11 SER A 15 -77.29 -93.29 REMARK 500 11 VAL A 53 -66.13 -127.15 REMARK 500 12 SER A 15 -86.25 -88.47 REMARK 500 12 CYS A 16 -74.38 -149.52 REMARK 500 12 VAL A 53 -61.65 -126.95 REMARK 500 13 VAL A 53 -69.53 -121.69 REMARK 500 15 ASN A 2 -92.85 53.12 REMARK 500 15 SER A 15 -73.21 -124.86 REMARK 500 15 GLU A 34 -63.39 -91.16 REMARK 500 15 VAL A 53 -64.93 -122.21 REMARK 500 16 CYS A 16 -117.49 55.63 REMARK 500 16 VAL A 53 -64.05 -127.40 REMARK 500 17 MET A 14 -176.05 61.15 REMARK 500 17 SER A 15 -73.84 -151.01 REMARK 500 17 CYS A 16 -74.36 -152.66 REMARK 500 17 VAL A 53 -58.28 -128.49 REMARK 500 18 MET A 14 -85.93 -97.80 REMARK 500 18 SER A 15 -75.31 67.63 REMARK 500 18 VAL A 53 -65.93 -125.41 REMARK 500 19 ASN A 2 132.71 71.30 REMARK 500 19 VAL A 36 117.32 -164.30 REMARK 500 20 SER A 15 -1.04 -147.66 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP01108 RELATED DB: TARGETDB DBREF 2L3M A 4 71 UNP Q81WV5 Q81WV5_BACAN 1 68 SEQADV 2L3M SER A 1 UNP Q81WV5 EXPRESSION TAG SEQADV 2L3M ASN A 2 UNP Q81WV5 EXPRESSION TAG SEQADV 2L3M ALA A 3 UNP Q81WV5 EXPRESSION TAG SEQRES 1 A 71 SER ASN ALA MET GLU GLN LEU THR LEU GLN VAL GLU GLY SEQRES 2 A 71 MET SER CYS GLY HIS CYS VAL ASN ALA ILE GLU SER SER SEQRES 3 A 71 VAL LYS GLU LEU ASN GLY VAL GLU GLN VAL LYS VAL GLN SEQRES 4 A 71 LEU ALA GLU GLY THR VAL GLU VAL THR ILE ASP SER SER SEQRES 5 A 71 VAL VAL THR LEU LYS ASP ILE VAL ALA VAL ILE GLU ASP SEQRES 6 A 71 GLN GLY TYR ASP VAL GLN HELIX 1 1 CYS A 16 GLU A 29 1 14 HELIX 2 2 THR A 55 GLN A 66 1 12 SHEET 1 A 4 VAL A 33 GLN A 39 0 SHEET 2 A 4 THR A 44 ASP A 50 -1 O THR A 44 N GLN A 39 SHEET 3 A 4 MET A 4 GLU A 12 -1 N LEU A 7 O VAL A 47 SHEET 4 A 4 ASP A 69 GLN A 71 -1 O ASP A 69 N GLU A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000