PDB Short entry for 2L3S HEADER STRUCTURAL PROTEIN 21-SEP-10 2L3S TITLE STRUCTURE OF THE AUTOINHIBITED CRK COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOINHIBITED CRK PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTO-ONCOGENE C-CRK, P38; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: CRK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS ADAPTER PROTEIN, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.G.KALODIMOS,P.SARKAR,T.SALEH,S.R.TZENG,R.BIRGE REVDAT 2 05-JAN-11 2L3S 1 JRNL REVDAT 1 08-DEC-10 2L3S 0 JRNL AUTH P.SARKAR,T.SALEH,S.R.TZENG,R.B.BIRGE,C.G.KALODIMOS JRNL TITL STRUCTURAL BASIS FOR REGULATION OF THE CRK SIGNALING PROTEIN JRNL TITL 2 BY A PROLINE SWITCH. JRNL REF NAT.CHEM.BIOL. V. 7 51 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 21131971 JRNL DOI 10.1038/NCHEMBIO.494 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.14.4 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L3S COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-10. REMARK 100 THE RCSB ID CODE IS RCSB101920. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.140 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 RSKH PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCA; 3D HNCACB; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 271 H MET A 272 1.43 REMARK 500 H LEU A 201 H THR A 202 1.47 REMARK 500 HZ2 LYS A 165 HE1 TRP A 171 1.47 REMARK 500 H ASN A 147 OD2 ASP A 151 1.53 REMARK 500 HG SER A 226 H ASN A 228 1.55 REMARK 500 HB2 PRO A 230 H LEU A 231 1.59 REMARK 500 O ILE A 227 H THR A 229 1.59 REMARK 500 HD22 ASN A 205 OG1 THR A 255 1.61 REMARK 500 O ASN A 233 H GLN A 235 1.62 REMARK 500 H ASP A 175 O LYS A 179 1.65 REMARK 500 H ILE A 244 O HIS A 291 1.75 REMARK 500 O ASN A 250 H TYR A 252 1.76 REMARK 500 O TYR A 240 H LEU A 295 1.85 REMARK 500 NZ LYS A 165 HE1 TRP A 171 1.85 REMARK 500 C ASN A 250 H TYR A 252 1.85 REMARK 500 O ALA A 241 HD11 LEU A 264 1.87 REMARK 500 H GLY A 278 O GLY A 285 1.89 REMARK 500 HZ1 LYS A 165 NE1 TRP A 171 1.91 REMARK 500 O VAL A 185 H VAL A 188 1.92 REMARK 500 O VAL A 243 H GLY A 262 1.92 REMARK 500 C ILE A 227 H THR A 229 1.92 REMARK 500 O ASN A 250 H ASP A 253 1.93 REMARK 500 H LYS A 266 O GLU A 279 1.95 REMARK 500 O ASP A 164 H ASN A 172 1.96 REMARK 500 C ASN A 233 H GLN A 235 1.97 REMARK 500 C LYS A 254 H ALA A 256 2.01 REMARK 500 H LEU A 152 O MET A 182 2.02 REMARK 500 H ARG A 163 O ASN A 172 2.02 REMARK 500 O ILE A 227 HG1 THR A 229 2.03 REMARK 500 O ALA A 173 H GLY A 181 2.03 REMARK 500 O LYS A 161 H GLU A 174 2.04 REMARK 500 NE1 TRP A 170 HE1 PHE A 239 2.05 REMARK 500 O GLN A 169 H VAL A 185 2.06 REMARK 500 HA GLU A 277 O GLY A 285 2.08 REMARK 500 O GLU A 260 H GLU A 263 2.09 REMARK 500 O PRO A 184 H TYR A 187 2.10 REMARK 500 C GLN A 224 H SER A 226 2.11 REMARK 500 O ASP A 143 HE2 TYR A 187 2.12 REMARK 500 O VAL A 185 HG21 VAL A 188 2.13 REMARK 500 O LYS A 254 H ALA A 256 2.13 REMARK 500 HG2 PRO A 249 O LEU A 257 2.13 REMARK 500 O ARG A 242 H ARG A 293 2.13 REMARK 500 OG SER A 226 H ASN A 228 2.14 REMARK 500 H TRP A 171 O ILE A 183 2.15 REMARK 500 H PHE A 144 O PHE A 154 2.15 REMARK 500 C ASN A 281 H LYS A 283 2.16 REMARK 500 O GLY A 282 H ARG A 284 2.17 REMARK 500 H ASN A 145 O PHE A 154 2.17 REMARK 500 O LEU A 152 HD2 PHE A 154 2.18 REMARK 500 O ASN A 250 N TYR A 252 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 1233 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 11 PRO A 238 CD PRO A 238 N -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 TYR A 240 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 2 TYR A 240 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 TYR A 240 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 5 TYR A 240 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 6 TYR A 240 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 6 TYR A 240 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 7 TYR A 240 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 8 TYR A 240 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 10 TYR A 240 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 11 TYR A 240 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 13 TYR A 240 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 14 TYR A 240 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 14 TYR A 240 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 18 TYR A 240 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 20 TYR A 240 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 20 TYR A 240 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 136 -103.66 -83.29 REMARK 500 1 TYR A 137 152.13 -44.61 REMARK 500 1 ASP A 143 138.76 55.39 REMARK 500 1 ASN A 145 59.22 36.21 REMARK 500 1 ASN A 147 88.28 166.80 REMARK 500 1 ASP A 148 -178.42 171.97 REMARK 500 1 LYS A 155 102.93 -175.86 REMARK 500 1 LYS A 156 77.00 127.61 REMARK 500 1 LYS A 165 77.53 -119.48 REMARK 500 1 LYS A 190 -13.00 137.02 REMARK 500 1 CYS A 191 70.78 59.95 REMARK 500 1 SER A 194 -64.33 -171.85 REMARK 500 1 SER A 197 84.90 61.64 REMARK 500 1 SER A 199 108.92 -45.05 REMARK 500 1 LEU A 201 -2.99 -172.52 REMARK 500 1 THR A 202 102.20 -30.59 REMARK 500 1 ASN A 205 74.37 -150.34 REMARK 500 1 GLU A 218 148.78 -179.75 REMARK 500 1 TYR A 222 173.01 -58.12 REMARK 500 1 ALA A 223 94.07 -38.76 REMARK 500 1 PRO A 225 -9.35 -50.15 REMARK 500 1 SER A 226 -167.87 -103.96 REMARK 500 1 ASN A 228 29.91 -63.54 REMARK 500 1 PRO A 230 -101.00 -35.47 REMARK 500 1 ASN A 233 115.68 -176.22 REMARK 500 1 LEU A 234 -29.99 63.37 REMARK 500 1 GLN A 235 140.98 73.65 REMARK 500 1 PRO A 238 98.39 -46.78 REMARK 500 1 PHE A 239 -132.09 -116.51 REMARK 500 1 GLN A 245 102.39 177.99 REMARK 500 1 LYS A 246 -146.25 -146.76 REMARK 500 1 ARG A 247 -145.53 -155.97 REMARK 500 1 ALA A 251 -8.50 -37.07 REMARK 500 1 LYS A 254 25.39 -151.75 REMARK 500 1 THR A 255 -18.64 73.83 REMARK 500 1 ALA A 256 108.69 -43.95 REMARK 500 1 LEU A 257 159.85 -47.48 REMARK 500 1 GLU A 263 -139.76 -97.53 REMARK 500 1 LEU A 264 139.99 175.37 REMARK 500 1 ASN A 271 -88.53 -97.73 REMARK 500 1 TRP A 276 -164.95 -120.33 REMARK 500 1 GLU A 279 131.19 -170.32 REMARK 500 1 CYS A 280 -92.86 -112.82 REMARK 500 1 ASN A 281 54.61 -101.40 REMARK 500 1 LYS A 283 90.40 -61.41 REMARK 500 1 PHE A 287 135.02 160.28 REMARK 500 1 THR A 290 2.78 -68.68 REMARK 500 1 LEU A 294 135.52 -32.77 REMARK 500 2 GLU A 136 -85.27 -83.77 REMARK 500 2 TYR A 137 116.45 72.98 REMARK 500 REMARK 500 THIS ENTRY HAS 1054 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L3P RELATED DB: PDB REMARK 900 RELATED ID: 2L3Q RELATED DB: PDB DBREF 2L3S A 135 297 UNP Q04929 CRK_CHICK 135 297 SEQRES 1 A 163 VAL GLU TYR VAL ARG ALA LEU PHE ASP PHE ASN GLY ASN SEQRES 2 A 163 ASP ASP GLU ASP LEU PRO PHE LYS LYS GLY ASP ILE LEU SEQRES 3 A 163 LYS ILE ARG ASP LYS PRO GLU GLU GLN TRP TRP ASN ALA SEQRES 4 A 163 GLU ASP MET ASP GLY LYS ARG GLY MET ILE PRO VAL PRO SEQRES 5 A 163 TYR VAL GLU LYS CYS ARG PRO SER SER ALA SER VAL SER SEQRES 6 A 163 THR LEU THR GLY GLY ASN GLN ASP SER SER HIS PRO GLN SEQRES 7 A 163 PRO LEU GLY GLY PRO GLU PRO GLY PRO TYR ALA GLN PRO SEQRES 8 A 163 SER ILE ASN THR PRO LEU PRO ASN LEU GLN ASN GLY PRO SEQRES 9 A 163 PHE TYR ALA ARG VAL ILE GLN LYS ARG VAL PRO ASN ALA SEQRES 10 A 163 TYR ASP LYS THR ALA LEU ALA LEU GLU VAL GLY GLU LEU SEQRES 11 A 163 VAL LYS VAL THR LYS ILE ASN MET SER GLY GLN TRP GLU SEQRES 12 A 163 GLY GLU CYS ASN GLY LYS ARG GLY HIS PHE PRO PHE THR SEQRES 13 A 163 HIS VAL ARG LEU LEU ASP GLN HELIX 1 1 PRO A 186 VAL A 188 5 3 HELIX 2 2 PRO A 288 VAL A 292 5 5 SHEET 1 A 4 VAL A 138 ALA A 140 0 SHEET 2 A 4 ASP A 158 ASP A 164 -1 O LEU A 160 N VAL A 138 SHEET 3 A 4 TRP A 170 GLU A 174 -1 O ASN A 172 N ARG A 163 SHEET 4 A 4 ARG A 180 PRO A 184 -1 O GLY A 181 N ALA A 173 SHEET 1 B 2 GLU A 277 GLU A 279 0 SHEET 2 B 2 ARG A 284 HIS A 286 -1 O GLY A 285 N GLY A 278 CISPEP 1 GLY A 237 PRO A 238 1 0.05 CISPEP 2 GLY A 237 PRO A 238 2 1.86 CISPEP 3 GLY A 237 PRO A 238 3 -0.54 CISPEP 4 GLY A 237 PRO A 238 4 -5.73 CISPEP 5 GLY A 237 PRO A 238 5 1.46 CISPEP 6 GLY A 237 PRO A 238 6 -3.50 CISPEP 7 GLY A 237 PRO A 238 7 -0.51 CISPEP 8 GLY A 237 PRO A 238 8 -2.07 CISPEP 9 GLY A 237 PRO A 238 9 0.04 CISPEP 10 GLY A 237 PRO A 238 10 -1.17 CISPEP 11 GLY A 237 PRO A 238 11 -5.34 CISPEP 12 GLY A 237 PRO A 238 12 0.38 CISPEP 13 GLY A 237 PRO A 238 13 -1.29 CISPEP 14 GLY A 237 PRO A 238 14 -1.99 CISPEP 15 GLY A 237 PRO A 238 15 0.47 CISPEP 16 GLY A 237 PRO A 238 16 0.30 CISPEP 17 GLY A 237 PRO A 238 17 0.22 CISPEP 18 GLY A 237 PRO A 238 18 1.92 CISPEP 19 GLY A 237 PRO A 238 19 -6.03 CISPEP 20 GLY A 237 PRO A 238 20 -6.95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000