PDB Short entry for 2L6X HEADER PROTON TRANSPORT 29-NOV-10 2L6X TITLE SOLUTION NMR STRUCTURE OF PROTEORHODOPSIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN-LIGHT ABSORBING PROTEORHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED MARINE GAMMA PROTEOBACTERIUM SOURCE 3 EBAC31A08; SOURCE 4 ORGANISM_TAXID: 133804; SOURCE 5 STRAIN: EBAC31A08; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PIVEX2.3D KEYWDS PROTEORHODOPSIN, MEMBRANE PROTEIN STRUCTURE, CELL-FREE EXPRESSION, KEYWDS 2 PROTON TRANSPORT, STRUCTURAL GENOMICS, PSI:BIOLOGY, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, MEMBRANE PROTEIN STRUCTURES BY SOLUTION NMR, KEYWDS 4 MPSBYNMR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.RECKEL,D.GOTTSTEIN,J.STEHLE,F.LOEHR,M.TAKEDA,R.SILVERS,M.KAINOSHO, AUTHOR 2 C.GLAUBITZ,F.BERNHARD,H.SCHWALBE,P.GUNTERT,V.DOETSCH,MEMBRANE AUTHOR 3 PROTEIN STRUCTURES BY SOLUTION NMR (MPSBYNMR) REVDAT 5 05-FEB-20 2L6X 1 REMARK SEQADV LINK REVDAT 4 17-JUN-15 2L6X 1 ATOM HET HETATM HETNAM REVDAT 3 11-APR-12 2L6X 1 AUTHOR KEYWDS REMARK REVDAT 2 28-DEC-11 2L6X 1 JRNL REVDAT 1 09-NOV-11 2L6X 0 JRNL AUTH S.RECKEL,D.GOTTSTEIN,J.STEHLE,F.LOHR,M.K.VERHOEFEN,M.TAKEDA, JRNL AUTH 2 R.SILVERS,M.KAINOSHO,C.GLAUBITZ,J.WACHTVEITL,F.BERNHARD, JRNL AUTH 3 H.SCHWALBE,P.GUNTERT,V.DOTSCH JRNL TITL SOLUTION NMR STRUCTURE OF PROTEORHODOPSIN. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 50 11942 2011 JRNL REFN ISSN 1433-7851 JRNL PMID 22034093 JRNL DOI 10.1002/ANIE.201105648 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102033. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 323 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0.025 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 300 UM [U-13C; U-15N] REMARK 210 PROTEORHODOPSIN, 90% H2O/10% D2O; REMARK 210 300 UM [U-13C; U-15N; U-2H] REMARK 210 PROTEORHODOPSIN, 90% H2O/10% D2O; REMARK 210 300 UM [U-15N; U-2H] REMARK 210 PROTEORHODOPSIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCACB; 3D HNCO; 3D REMARK 210 HCACO; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ; 900 MHZ; 950 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 253 REMARK 465 SER A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 22 89.34 -172.92 REMARK 500 1 ALA A 25 -73.07 -55.73 REMARK 500 1 ASP A 27 -71.03 -58.43 REMARK 500 1 PRO A 90 99.96 -69.78 REMARK 500 1 ASN A 118 -78.39 -179.61 REMARK 500 1 ALA A 147 -20.17 165.11 REMARK 500 1 ASN A 176 -71.74 176.53 REMARK 500 1 ALA A 178 -166.99 47.71 REMARK 500 1 ASP A 212 34.58 176.87 REMARK 500 1 LYS A 231 -51.57 -131.59 REMARK 500 1 SER A 247 93.77 172.92 REMARK 500 2 PRO A 90 78.79 -69.71 REMARK 500 2 ASN A 118 -73.60 178.17 REMARK 500 2 ALA A 147 -47.94 -149.75 REMARK 500 2 ASN A 176 -65.32 -97.28 REMARK 500 2 ALA A 178 -166.14 -61.27 REMARK 500 2 LEU A 209 39.16 -99.54 REMARK 500 2 MET A 210 91.11 -65.48 REMARK 500 2 LYS A 231 -58.30 -130.74 REMARK 500 2 SER A 247 95.26 60.95 REMARK 500 2 ALA A 249 160.43 63.48 REMARK 500 2 PRO A 250 95.57 -69.73 REMARK 500 3 ASP A 22 82.13 57.78 REMARK 500 3 ASP A 24 -177.13 -68.38 REMARK 500 3 SER A 55 157.84 -48.03 REMARK 500 3 PRO A 90 97.59 -69.70 REMARK 500 3 ASN A 118 -78.04 175.63 REMARK 500 3 ALA A 147 -29.89 176.40 REMARK 500 3 ASN A 176 -58.66 75.20 REMARK 500 3 ALA A 178 -166.64 47.75 REMARK 500 3 LYS A 231 -60.36 -120.94 REMARK 500 3 SER A 247 92.17 61.71 REMARK 500 4 ASP A 22 -70.13 -74.62 REMARK 500 4 THR A 117 -71.74 -123.21 REMARK 500 4 ASN A 118 -75.67 170.75 REMARK 500 4 ALA A 147 -29.10 172.12 REMARK 500 4 ASN A 176 -58.64 75.35 REMARK 500 4 ALA A 178 -166.74 47.60 REMARK 500 4 MET A 210 -178.51 -62.36 REMARK 500 4 SER A 247 -75.65 69.31 REMARK 500 5 TYR A 78 -75.37 -65.87 REMARK 500 5 SER A 89 79.97 -115.15 REMARK 500 5 PRO A 90 73.07 -69.76 REMARK 500 5 ALA A 116 -78.62 -101.45 REMARK 500 5 THR A 117 -76.55 -48.18 REMARK 500 5 ASN A 118 -38.16 174.89 REMARK 500 5 MET A 146 137.14 -170.70 REMARK 500 5 ALA A 147 -27.44 173.73 REMARK 500 5 ALA A 178 -167.11 -111.92 REMARK 500 5 LEU A 209 40.81 -95.28 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17327 RELATED DB: BMRB REMARK 900 RELATED ID: MPSBYNMR-011 RELATED DB: TARGETTRACK DBREF 2L6X A 19 249 UNP Q9F7P4 PRRG_PRB01 19 249 SEQADV 2L6X MET A 18 UNP Q9F7P4 INITIATING METHIONINE SEQADV 2L6X PRO A 250 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X GLY A 251 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X GLY A 252 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X GLY A 253 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X SER A 254 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X HIS A 255 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X HIS A 256 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X HIS A 257 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X HIS A 258 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X HIS A 259 UNP Q9F7P4 EXPRESSION TAG SEQADV 2L6X HIS A 260 UNP Q9F7P4 EXPRESSION TAG SEQRES 1 A 243 MET GLY GLY GLY ASP LEU ASP ALA SER ASP TYR THR GLY SEQRES 2 A 243 VAL SER PHE TRP LEU VAL THR ALA ALA LEU LEU ALA SER SEQRES 3 A 243 THR VAL PHE PHE PHE VAL GLU ARG ASP ARG VAL SER ALA SEQRES 4 A 243 LYS TRP LYS THR SER LEU THR VAL SER GLY LEU VAL THR SEQRES 5 A 243 GLY ILE ALA PHE TRP HIS TYR MET TYR MET ARG GLY VAL SEQRES 6 A 243 TRP ILE GLU THR GLY ASP SER PRO THR VAL PHE ARG TYR SEQRES 7 A 243 ILE ASP TRP LEU LEU THR VAL PRO LEU LEU ILE CYS GLU SEQRES 8 A 243 PHE TYR LEU ILE LEU ALA ALA ALA THR ASN VAL ALA GLY SEQRES 9 A 243 SER LEU PHE LYS LYS LEU LEU VAL GLY SER LEU VAL MET SEQRES 10 A 243 LEU VAL PHE GLY TYR MET GLY GLU ALA GLY ILE MET ALA SEQRES 11 A 243 ALA TRP PRO ALA PHE ILE ILE GLY CYS LEU ALA TRP VAL SEQRES 12 A 243 TYR MET ILE TYR GLU LEU TRP ALA GLY GLU GLY LYS SER SEQRES 13 A 243 ALA CYS ASN THR ALA SER PRO ALA VAL GLN SER ALA TYR SEQRES 14 A 243 ASN THR MET MET TYR ILE ILE ILE PHE GLY TRP ALA ILE SEQRES 15 A 243 TYR PRO VAL GLY TYR PHE THR GLY TYR LEU MET GLY ASP SEQRES 16 A 243 GLY GLY SER ALA LEU ASN LEU ASN LEU ILE TYR ASN LEU SEQRES 17 A 243 ALA ASP PHE VAL ASN LYS ILE LEU PHE GLY LEU ILE ILE SEQRES 18 A 243 TRP ASN VAL ALA VAL LYS GLU SER SER ASN ALA PRO GLY SEQRES 19 A 243 GLY GLY SER HIS HIS HIS HIS HIS HIS HET RET A 301 48 HETNAM RET RETINAL FORMUL 2 RET C20 H28 O HELIX 1 1 ASP A 24 GLU A 50 1 27 HELIX 2 2 ARG A 51 ARG A 53 5 3 HELIX 3 3 TRP A 58 GLY A 87 1 30 HELIX 4 4 PRO A 90 ALA A 115 1 26 HELIX 5 5 GLY A 121 GLY A 144 1 24 HELIX 6 6 PRO A 150 TRP A 167 1 18 HELIX 7 7 SER A 179 LEU A 209 1 31 HELIX 8 8 SER A 215 ASN A 230 1 16 LINK NZ LYS A 231 C15 RET A 301 1555 1555 1.33 SITE 1 AC1 10 TRP A 98 VAL A 133 PHE A 137 ALA A 151 SITE 2 AC1 10 ILE A 154 TRP A 197 TYR A 200 ASP A 227 SITE 3 AC1 10 ASN A 230 LYS A 231 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000