PDB Short entry for 2LAA HEADER HYDROLASE 09-MAR-11 2LAA TITLE SOLUTION STRUCUTURE OF THE CBM25-1 OF BETA/ALPHA-AMYLASE FROM TITLE 2 PAENIBACILLUS POLYMYXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA/ALPHA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 455-558; COMPND 5 SYNONYM: BETA-AMYLASE, ALPHA-AMYLASE; COMPND 6 EC: 3.2.1.2, 3.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS POLYMYXA; SOURCE 3 ORGANISM_TAXID: 1406; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET16B KEYWDS SBD, CBM25, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.HORIBE,S.NISHIMURA,R.TAKAHASHI,T.OHKUBO,T.YOSHIDA REVDAT 1 04-APR-12 2LAA 0 JRNL AUTH R.TAKAHASHI,I.HORIBE,H.FUKADA,T.YOSHIDA,T.OHKUBO,T.INUI, JRNL AUTH 2 S.NISHIMURA,J.SUMITANI JRNL TITL A FUNCTIONAL AND STRUCTURAL ANALYSIS OF TUNDEM FAMILY 25 JRNL TITL 2 CARBOHYDRATE-BINDING MODULES FROM PAENIBACILLUS POLYMYXA JRNL TITL 3 BETA/ALPHA-AMYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-11. REMARK 100 THE RCSB ID CODE IS RCSB102153. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.2 MM [U-100% 15N] SODIUM REMARK 210 ACETATE-1, 0.5-1.2 MM [U-99% 13C; REMARK 210 U-99% 15N] SODIUM ACETATE-2, 90% REMARK 210 H2O/10% D2O; 0.6 MM [U-100% 15N] REMARK 210 SODIUM ACETATE-3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY; 3D REMARK 210 HNCO; 2D 1H-13C HSQC AROMATIC; 2D REMARK 210 1H-13C HSQC ALIPHATIC; 3D 1H-15N REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, DYANA, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 471 H ALA A 474 1.47 REMARK 500 HZ3 LYS A 432 O ASN A 435 1.57 REMARK 500 O PRO A 443 H GLY A 446 1.57 REMARK 500 OD2 ASP A 470 H GLY A 472 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 434 -63.03 -128.95 REMARK 500 1 ASN A 435 -48.83 150.57 REMARK 500 1 ALA A 444 105.06 -51.76 REMARK 500 1 GLN A 457 174.71 -56.30 REMARK 500 1 ILE A 461 -48.92 -29.12 REMARK 500 1 SER A 462 45.28 155.65 REMARK 500 1 SER A 473 -14.04 147.30 REMARK 500 1 ASN A 485 -81.42 -75.71 REMARK 500 1 ASN A 486 19.48 -159.51 REMARK 500 1 ASP A 489 99.38 -162.62 REMARK 500 1 ASN A 491 42.82 28.75 REMARK 500 1 ASN A 492 -45.44 85.96 REMARK 500 1 THR A 493 45.18 -179.12 REMARK 500 1 LYS A 494 -75.42 -148.18 REMARK 500 1 ASN A 495 140.61 160.75 REMARK 500 1 THR A 500 145.09 -30.57 REMARK 500 1 ASN A 509 69.38 -66.92 REMARK 500 1 SER A 510 -96.89 153.63 REMARK 500 1 ALA A 522 53.76 -108.67 REMARK 500 2 PHE A 434 -57.42 -147.18 REMARK 500 2 ASN A 435 -58.82 143.81 REMARK 500 2 ALA A 444 104.12 -53.29 REMARK 500 2 GLN A 457 175.83 -50.80 REMARK 500 2 ILE A 461 -47.14 -29.46 REMARK 500 2 SER A 462 43.85 154.79 REMARK 500 2 SER A 473 -17.49 148.31 REMARK 500 2 ASN A 485 -83.18 -79.70 REMARK 500 2 ASN A 486 16.45 -153.94 REMARK 500 2 ASN A 491 -28.79 -38.13 REMARK 500 2 ASN A 492 -22.88 160.05 REMARK 500 2 THR A 493 28.75 178.05 REMARK 500 2 LYS A 494 -70.59 -145.86 REMARK 500 2 ASN A 495 172.27 153.37 REMARK 500 2 THR A 500 137.51 -26.35 REMARK 500 2 ASN A 509 154.72 152.17 REMARK 500 2 SER A 510 -86.61 70.10 REMARK 500 2 ALA A 513 100.15 -165.97 REMARK 500 2 ALA A 522 56.52 -112.01 REMARK 500 3 PHE A 434 -66.69 -138.72 REMARK 500 3 ASN A 435 -48.45 153.20 REMARK 500 3 SER A 436 60.00 -142.14 REMARK 500 3 ALA A 444 103.84 -52.76 REMARK 500 3 ALA A 450 95.65 -59.11 REMARK 500 3 GLN A 457 173.56 -50.18 REMARK 500 3 ILE A 461 -48.66 -28.08 REMARK 500 3 SER A 462 47.66 156.57 REMARK 500 3 SER A 473 -13.56 146.25 REMARK 500 3 ASN A 486 -20.36 151.76 REMARK 500 3 ASP A 489 91.60 -161.90 REMARK 500 3 ASN A 491 35.73 34.57 REMARK 500 REMARK 500 THIS ENTRY HAS 370 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17518 RELATED DB: BMRB REMARK 900 RELATED ID: 2LAB RELATED DB: PDB DBREF 2LAA A 420 523 UNP P21543 AMYB_PAEPO 455 558 SEQRES 1 A 104 GLY GLY THR GLY ASN LYS VAL THR ILE TYR TYR LYS LYS SEQRES 2 A 104 GLY PHE ASN SER PRO TYR ILE HIS TYR ARG PRO ALA GLY SEQRES 3 A 104 GLY SER TRP THR ALA ALA PRO GLY VAL LYS MET GLN ASP SEQRES 4 A 104 ALA GLU ILE SER GLY TYR ALA LYS ILE THR VAL ASP ILE SEQRES 5 A 104 GLY SER ALA SER GLN LEU GLU ALA ALA PHE ASN ASP GLY SEQRES 6 A 104 ASN ASN ASN TRP ASP SER ASN ASN THR LYS ASN TYR SER SEQRES 7 A 104 PHE SER THR GLY THR SER THR TYR THR PRO GLY ASN SER SEQRES 8 A 104 GLY ASN ALA GLY THR ILE THR SER GLY ALA PRO ALA GLY SHEET 1 A 5 GLN A 457 ALA A 459 0 SHEET 2 A 5 TYR A 464 ASP A 470 -1 O TYR A 464 N ALA A 459 SHEET 3 A 5 LYS A 425 LYS A 431 -1 N TYR A 430 O ALA A 465 SHEET 4 A 5 GLY A 501 THR A 506 1 O TYR A 505 N TYR A 429 SHEET 5 A 5 THR A 515 SER A 518 -1 O THR A 515 N THR A 506 SHEET 1 B 4 VAL A 454 LYS A 455 0 SHEET 2 B 4 TYR A 438 PRO A 443 -1 N ILE A 439 O VAL A 454 SHEET 3 B 4 LEU A 477 ASN A 482 -1 O GLU A 478 N ARG A 442 SHEET 4 B 4 TRP A 488 ASP A 489 -1 O ASP A 489 N PHE A 481 SHEET 1 C 4 VAL A 454 LYS A 455 0 SHEET 2 C 4 TYR A 438 PRO A 443 -1 N ILE A 439 O VAL A 454 SHEET 3 C 4 LEU A 477 ASN A 482 -1 O GLU A 478 N ARG A 442 SHEET 4 C 4 TYR A 496 PHE A 498 -1 O PHE A 498 N LEU A 477 CISPEP 1 ALA A 451 PRO A 452 1 0.04 CISPEP 2 ALA A 451 PRO A 452 2 0.06 CISPEP 3 ALA A 451 PRO A 452 3 0.06 CISPEP 4 ALA A 451 PRO A 452 4 -0.02 CISPEP 5 ALA A 451 PRO A 452 5 0.06 CISPEP 6 ALA A 451 PRO A 452 6 0.02 CISPEP 7 ALA A 451 PRO A 452 7 -0.06 CISPEP 8 ALA A 451 PRO A 452 8 -0.01 CISPEP 9 ALA A 451 PRO A 452 9 -0.03 CISPEP 10 ALA A 451 PRO A 452 10 0.05 CISPEP 11 ALA A 451 PRO A 452 11 -0.02 CISPEP 12 ALA A 451 PRO A 452 12 -0.05 CISPEP 13 ALA A 451 PRO A 452 13 -0.03 CISPEP 14 ALA A 451 PRO A 452 14 -0.06 CISPEP 15 ALA A 451 PRO A 452 15 -0.02 CISPEP 16 ALA A 451 PRO A 452 16 0.02 CISPEP 17 ALA A 451 PRO A 452 17 -0.04 CISPEP 18 ALA A 451 PRO A 452 18 0.00 CISPEP 19 ALA A 451 PRO A 452 19 0.00 CISPEP 20 ALA A 451 PRO A 452 20 0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000