PDB Short entry for 2LAB HEADER HYDROLASE 09-MAR-11 2LAB TITLE SOLUTION STRUCUTURE OF THE CBM25-2 OF BETA/ALPHA-AMYLASE FROM TITLE 2 PAENIBACILLUS POLYMYXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA/ALPHA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 565-668; COMPND 5 SYNONYM: BETA-AMYLASE, ALPHA-AMYLASE; COMPND 6 EC: 3.2.1.2, 3.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS POLYMYXA; SOURCE 3 ORGANISM_COMMON: BACILLUS POLYMYXA; SOURCE 4 ORGANISM_TAXID: 1406; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET16B KEYWDS SBD, CBM25, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.TAKAHASHI,S.NISHIMURA,T.OHKUBO,T.YOSHIDA REVDAT 1 04-APR-12 2LAB 0 JRNL AUTH R.TAKAHASHI,I.HORIBE,H.FUKADA,T.YOSHIDA,T.OHKUBO,T.INUI, JRNL AUTH 2 S.NISHIMURA,J.SUMITANI JRNL TITL A FUNCTIONAL AND STRUCTURAL ANALYSIS OF TUNDEM FAMILY 25 JRNL TITL 2 CARBOHYDRATE-BINDING MODULES FROM PAENIBACILLUS POLYMYXA JRNL TITL 3 BETA/ALPHA-AMYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : GUNTERT, BRAUN AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB102154. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.2 MM [U-100% 15N] SODIUM REMARK 210 ACETATE-1, 0.5-1.2 MM [U-13C; U- REMARK 210 15N] SODIUM ACETATE-2, 90% H2O/ REMARK 210 10% D2O; 0.6 MM [U-100% 15N] REMARK 210 SODIUM ACETATE-3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D HN(COCA) REMARK 210 CB; 3D HCCH-TOCSY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA, SPARKY, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 581 H SER A 583 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 532 -75.56 -94.73 REMARK 500 1 THR A 533 89.94 -166.49 REMARK 500 1 PHE A 544 -86.09 -130.53 REMARK 500 1 ASN A 545 -52.24 -147.42 REMARK 500 1 SER A 546 61.19 -164.65 REMARK 500 1 ALA A 554 83.16 -4.51 REMARK 500 1 THR A 559 164.58 -41.12 REMARK 500 1 MET A 566 125.30 -30.39 REMARK 500 1 ASP A 568 145.22 -36.83 REMARK 500 1 ALA A 569 -144.94 -79.35 REMARK 500 1 ILE A 571 -86.68 -83.87 REMARK 500 1 SER A 572 95.07 171.53 REMARK 500 1 ILE A 581 57.41 -149.77 REMARK 500 1 SER A 583 -25.42 159.03 REMARK 500 1 ASN A 596 26.25 48.72 REMARK 500 1 ASN A 597 77.00 -116.32 REMARK 500 1 SER A 600 -96.23 -52.28 REMARK 500 1 ASN A 601 -96.16 -172.26 REMARK 500 1 THR A 603 -73.12 -160.93 REMARK 500 1 LYS A 604 -74.88 -129.41 REMARK 500 1 ASN A 620 -138.67 -61.85 REMARK 500 2 PHE A 544 -82.69 -120.29 REMARK 500 2 ASN A 545 -48.27 -154.16 REMARK 500 2 SER A 546 61.04 -164.36 REMARK 500 2 SER A 557 -174.32 -178.41 REMARK 500 2 MET A 566 119.97 -31.75 REMARK 500 2 ALA A 569 -144.13 -71.51 REMARK 500 2 SER A 572 110.63 86.75 REMARK 500 2 ILE A 581 61.02 -153.02 REMARK 500 2 SER A 583 41.62 154.65 REMARK 500 2 ASN A 597 77.35 -114.65 REMARK 500 2 SER A 600 -70.25 -83.51 REMARK 500 2 ASN A 601 -51.31 167.46 REMARK 500 2 ASN A 602 -54.70 -143.38 REMARK 500 2 THR A 603 -34.26 175.00 REMARK 500 2 ASN A 605 -151.03 37.77 REMARK 500 2 THR A 610 176.13 -53.75 REMARK 500 2 PRO A 617 -166.49 -75.00 REMARK 500 2 ALA A 623 147.79 -39.24 REMARK 500 2 SER A 632 81.04 -152.56 REMARK 500 3 THR A 533 -60.94 -157.28 REMARK 500 3 PHE A 544 -123.53 -119.02 REMARK 500 3 ALA A 554 -74.08 -30.06 REMARK 500 3 THR A 559 171.67 -45.31 REMARK 500 3 MET A 566 131.25 -35.78 REMARK 500 3 ASP A 568 146.23 -37.20 REMARK 500 3 ALA A 569 -142.04 -79.78 REMARK 500 3 ILE A 571 -92.55 -89.08 REMARK 500 3 SER A 572 99.94 174.62 REMARK 500 3 ILE A 581 45.41 -156.30 REMARK 500 REMARK 500 THIS ENTRY HAS 403 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17519 RELATED DB: BMRB REMARK 900 RELATED ID: 2LAA RELATED DB: PDB DBREF 2LAB A 530 633 UNP P21543 AMYB_PAEPO 565 668 SEQRES 1 A 104 GLY GLY THR THR ASN LYS VAL THR VAL TYR TYR LYS LYS SEQRES 2 A 104 GLY PHE ASN SER PRO TYR ILE HIS TYR ARG PRO ALA GLY SEQRES 3 A 104 GLY SER TRP THR ALA ALA PRO GLY VAL LYS MET GLN ASP SEQRES 4 A 104 ALA GLU ILE SER GLY TYR ALA LYS ILE THR VAL ASP ILE SEQRES 5 A 104 GLY SER ALA SER GLN LEU GLU ALA ALA PHE ASN ASP GLY SEQRES 6 A 104 ASN ASN ASN TRP ASP SER ASN ASN THR LYS ASN TYR LEU SEQRES 7 A 104 PHE SER THR GLY THR SER THR TYR THR PRO GLY SER ASN SEQRES 8 A 104 GLY ALA ALA GLY THR ILE ARG THR GLY ALA PRO SER GLY SHEET 1 A 5 GLN A 567 ASP A 568 0 SHEET 2 A 5 TYR A 574 ASP A 580 -1 O LYS A 576 N GLN A 567 SHEET 3 A 5 LYS A 535 LYS A 541 -1 N TYR A 540 O ALA A 575 SHEET 4 A 5 GLY A 611 THR A 616 1 O SER A 613 N THR A 537 SHEET 5 A 5 THR A 625 THR A 628 -1 O THR A 625 N THR A 616 SHEET 1 B 4 VAL A 564 LYS A 565 0 SHEET 2 B 4 TYR A 548 PRO A 553 -1 N ILE A 549 O VAL A 564 SHEET 3 B 4 LEU A 587 ASN A 592 -1 O ASN A 592 N TYR A 548 SHEET 4 B 4 TYR A 606 PHE A 608 -1 O PHE A 608 N LEU A 587 CISPEP 1 LYS A 542 GLY A 543 1 -0.02 CISPEP 2 ALA A 561 PRO A 562 1 -0.05 CISPEP 3 LYS A 542 GLY A 543 2 0.05 CISPEP 4 ALA A 561 PRO A 562 2 0.01 CISPEP 5 LYS A 542 GLY A 543 3 -0.02 CISPEP 6 ALA A 561 PRO A 562 3 -0.03 CISPEP 7 LYS A 542 GLY A 543 4 -0.01 CISPEP 8 ALA A 561 PRO A 562 4 -0.02 CISPEP 9 LYS A 542 GLY A 543 5 0.00 CISPEP 10 ALA A 561 PRO A 562 5 -0.05 CISPEP 11 LYS A 542 GLY A 543 6 -0.10 CISPEP 12 ALA A 561 PRO A 562 6 0.09 CISPEP 13 LYS A 542 GLY A 543 7 -0.02 CISPEP 14 ALA A 561 PRO A 562 7 0.00 CISPEP 15 LYS A 542 GLY A 543 8 0.05 CISPEP 16 ALA A 561 PRO A 562 8 0.04 CISPEP 17 LYS A 542 GLY A 543 9 0.00 CISPEP 18 ALA A 561 PRO A 562 9 0.01 CISPEP 19 LYS A 542 GLY A 543 10 0.00 CISPEP 20 ALA A 561 PRO A 562 10 -0.07 CISPEP 21 LYS A 542 GLY A 543 11 0.03 CISPEP 22 ALA A 561 PRO A 562 11 0.05 CISPEP 23 LYS A 542 GLY A 543 12 -0.04 CISPEP 24 ALA A 561 PRO A 562 12 -0.07 CISPEP 25 LYS A 542 GLY A 543 13 -0.03 CISPEP 26 ALA A 561 PRO A 562 13 -0.08 CISPEP 27 LYS A 542 GLY A 543 14 0.02 CISPEP 28 ALA A 561 PRO A 562 14 -0.02 CISPEP 29 LYS A 542 GLY A 543 15 0.02 CISPEP 30 ALA A 561 PRO A 562 15 -0.03 CISPEP 31 LYS A 542 GLY A 543 16 -0.06 CISPEP 32 ALA A 561 PRO A 562 16 -0.06 CISPEP 33 LYS A 542 GLY A 543 17 0.03 CISPEP 34 ALA A 561 PRO A 562 17 -0.04 CISPEP 35 LYS A 542 GLY A 543 18 0.09 CISPEP 36 ALA A 561 PRO A 562 18 -0.11 CISPEP 37 LYS A 542 GLY A 543 19 0.04 CISPEP 38 ALA A 561 PRO A 562 19 0.00 CISPEP 39 LYS A 542 GLY A 543 20 0.03 CISPEP 40 ALA A 561 PRO A 562 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000