PDB Short entry for 2LCK HEADER TRANSPORT PROTEIN 29-APR-11 2LCK TITLE STRUCTURE OF THE MITOCHONDRIAL UNCOUPLING PROTEIN 2 DETERMINED BY NMR TITLE 2 MOLECULAR FRAGMENT REPLACEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL UNCOUPLING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 14-309; COMPND 5 SYNONYM: UCP 2, SOLUTE CARRIER FAMILY 25 MEMBER 8, UCPH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UCP2, SLC25A8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-21 KEYWDS MEMBRANE PROTEIN, PROTON TRANSLOCATOR, MITOCHONDRIAL CARRIER, KEYWDS 2 TRANSPORT PROTEIN, STRUCTURAL GENOMICS, MEMBRANE PROTEIN STRUCTURES KEYWDS 3 BY SOLUTION NMR, MPSBYNMR EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR M.J.BERARDI,J.J.CHOU,MEMBRANE PROTEIN STRUCTURES BY SOLUTION NMR AUTHOR 2 (MPSBYNMR) REVDAT 2 17-AUG-11 2LCK 1 JRNL REVDAT 1 03-AUG-11 2LCK 0 JRNL AUTH M.J.BERARDI,W.M.SHIH,S.C.HARRISON,J.J.CHOU JRNL TITL MITOCHONDRIAL UNCOUPLING PROTEIN 2 STRUCTURE DETERMINED BY JRNL TITL 2 NMR MOLECULAR FRAGMENT SEARCHING. JRNL REF NATURE V. 476 109 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21785437 JRNL DOI 10.1038/NATURE10257 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.26, IN_HOUSE_PYTHON_SCRIPT REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR_ REMARK 3 NIH), (IN_HOUSE_PYTHON_SCRIPT) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DETERMINING LOCAL STRUCTURAL SEGMENTS REMARK 3 BY RDC-BASED MFR PROTOCOL, DETERMINING THE SPATIAL ARRANGEMENT OF REMARK 3 THE MFR-DERIVED SEGMENTS USING PRE DISTANCE RESTRAINTS REMARK 4 REMARK 4 2LCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-11. REMARK 100 THE RCSB ID CODE IS RCSB102230. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 33 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N; REMARK 210 U-80% 2H] UCP2, 5 MM GUANOSINE REMARK 210 DIPHOSPHATE, 150 MM REMARK 210 DODECYLPHOSPHOCHOLINE, 1 MM REMARK 210 CARDIOLIPIN, 2 MM DIMYRISTOYL- REMARK 210 PHOSPHATIDYLCHOLINE, 5 MM BETA- REMARK 210 MERCATPOETHANOL, 30 MM POTASSIUM REMARK 210 PHOSPHATE, 80 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O; 0.5 MM [U-100% REMARK 210 13C; U-100% 15N; U-80% 2H] UCP2, REMARK 210 5 MM GUANOSINE DIPHOSPHATE, 150 REMARK 210 MM DODECYLPHOSPHOCHOLINE, 1 MM REMARK 210 CARDIOLIPIN, 2 MM DIMYRISTOYL- REMARK 210 PHOSPHATIDYLCHOLINE, 5 MM BETA- REMARK 210 MERCATPOETHANOL, 30 MM POTASSIUM REMARK 210 PHOSPHATE, 80 MM SODIUM CHLORIDE, REMARK 210 2 W/V DNA NANOTUBE, 95% H2O/5% REMARK 210 D2O; 0.8 MM [U-100% 13C; U-100% REMARK 210 15N; U-80% 2H] UCP2-SL1, 5 MM REMARK 210 GUANOSINE DIPHOSPHATE, 150 MM REMARK 210 DODECYLPHOSPHOCHOLINE, 1 MM REMARK 210 CARDIOLIPIN, 2 MM DIMYRISTOYL- REMARK 210 PHOSPHATIDYLCHOLINE, 5 MM BETA- REMARK 210 MERCATPOETHANOL, 30 MM POTASSIUM REMARK 210 PHOSPHATE, 80 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O; 0.8 MM [U-100% REMARK 210 13C; U-100% 15N; U-80% 2H] UCP2- REMARK 210 SL2, 5 MM GUANOSINE DIPHOSPHATE, REMARK 210 150 MM DODECYLPHOSPHOCHOLINE, 1 REMARK 210 MM CARDIOLIPIN, 2 MM DIMYRISTOYL- REMARK 210 PHOSPHATIDYLCHOLINE, 5 MM BETA- REMARK 210 MERCATPOETHANOL, 30 MM POTASSIUM REMARK 210 PHOSPHATE, 80 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O; 0.8 MM [U-100% REMARK 210 13C; U-100% 15N; U-80% 2H] UCP2- REMARK 210 SL3, 5 MM GUANOSINE DIPHOSPHATE, REMARK 210 150 MM DODECYLPHOSPHOCHOLINE, 1 REMARK 210 MM CARDIOLIPIN, 2 MM DIMYRISTOYL- REMARK 210 PHOSPHATIDYLCHOLINE, 5 MM BETA- REMARK 210 MERCATPOETHANOL, 30 MM POTASSIUM REMARK 210 PHOSPHATE, 80 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O; 0.8 MM [U-100% REMARK 210 13C; U-100% 15N; U-80% 2H] UCP2- REMARK 210 SL4, 5 MM GUANOSINE DIPHOSPHATE, REMARK 210 150 MM DODECYLPHOSPHOCHOLINE, 1 REMARK 210 MM CARDIOLIPIN, 2 MM DIMYRISTOYL- REMARK 210 PHOSPHATIDYLCHOLINE, 5 MM BETA- REMARK 210 MERCATPOETHANOL, 30 MM POTASSIUM REMARK 210 PHOSPHATE, 80 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N TROSY-HSQC; 3D TROSY- REMARK 210 HNCA; 3D TROSY-HN(CO)CA; 3D TROSY REMARK 210 -HNCACB; 3D TROSY-HN(CO)CACB; 3D REMARK 210 TROSY-HN(CA)CO; 3D TROSY-HNCO; 3D REMARK 210 (HN,HN)-HMQC-NOESY-TROSY; 3D REMARK 210 J(NH)-SCALED TROSY-HNCO; 3D REMARK 210 QUANTITATIVE J(C'CA) TROSY-HNCO; REMARK 210 3D QUANTITATIVE J(C'N) TROSY-HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 3.0, NMRDRAW 3.0, XEASY, REMARK 210 X-PLOR_NIH 2.26 REMARK 210 METHOD USED : RDC-BASED MOLECULAR FRAGMENT REMARK 210 REPLACEMENT, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-15 REMARK 470 RES CSSEQI ATOMS REMARK 470 PHE A 309 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 40 H GLN A 42 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 41 39.06 -62.54 REMARK 500 1 ILE A 43 0.78 -63.11 REMARK 500 1 GLN A 44 78.98 64.13 REMARK 500 1 SER A 47 30.70 37.71 REMARK 500 1 GLN A 48 -2.80 -58.05 REMARK 500 1 SER A 56 -140.99 -125.69 REMARK 500 1 ALA A 57 12.74 97.87 REMARK 500 1 GLN A 58 84.59 -178.24 REMARK 500 1 SER A 111 -87.26 91.96 REMARK 500 1 GLU A 112 -34.36 171.64 REMARK 500 1 HIS A 113 42.46 156.87 REMARK 500 1 ALA A 114 -162.41 160.45 REMARK 500 1 GLN A 135 -41.79 -175.51 REMARK 500 1 ALA A 150 -114.79 46.59 REMARK 500 1 ARG A 154 -90.99 41.76 REMARK 500 1 GLN A 157 175.73 -54.48 REMARK 500 1 ALA A 207 33.06 -163.44 REMARK 500 1 ASN A 208 117.93 40.54 REMARK 500 1 LEU A 209 102.83 26.35 REMARK 500 1 MET A 210 51.32 -146.73 REMARK 500 1 MET A 243 -34.22 -25.82 REMARK 500 1 LEU A 247 150.09 63.20 REMARK 500 1 GLU A 264 85.06 56.50 REMARK 500 1 PHE A 273 12.09 -171.42 REMARK 500 1 ALA A 297 -164.09 -121.41 REMARK 500 1 LEU A 298 -173.96 -64.77 REMARK 500 1 MET A 299 66.99 -169.15 REMARK 500 1 ALA A 300 100.86 -175.59 REMARK 500 2 THR A 14 93.25 45.61 REMARK 500 2 LEU A 41 38.67 -62.38 REMARK 500 2 ILE A 43 147.98 60.28 REMARK 500 2 GLN A 44 105.25 -53.14 REMARK 500 2 SER A 47 -159.57 61.42 REMARK 500 2 GLN A 48 -7.39 66.40 REMARK 500 2 ALA A 54 -159.77 -92.88 REMARK 500 2 ALA A 55 -40.19 -169.78 REMARK 500 2 SER A 56 -139.58 -126.91 REMARK 500 2 ALA A 57 14.64 92.87 REMARK 500 2 GLN A 58 52.43 -155.45 REMARK 500 2 SER A 111 -156.36 94.33 REMARK 500 2 HIS A 113 48.59 -63.81 REMARK 500 2 ALA A 114 -162.20 159.06 REMARK 500 2 GLN A 135 -50.32 -179.58 REMARK 500 2 ALA A 148 -62.18 -96.42 REMARK 500 2 TYR A 156 -9.32 76.08 REMARK 500 2 GLN A 157 176.21 49.67 REMARK 500 2 ALA A 207 18.98 -170.72 REMARK 500 2 ASN A 208 -140.24 115.46 REMARK 500 2 LEU A 209 53.94 -176.07 REMARK 500 2 ASP A 212 -141.22 -83.86 REMARK 500 REMARK 500 THIS ENTRY HAS 490 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OKC RELATED DB: PDB REMARK 900 MITOCHONDRIAL ADP/ATP CARRIER REMARK 900 RELATED ID: 17614 RELATED DB: BMRB REMARK 900 RELATED ID: MPSBYNMR-2 RELATED DB: TARGETDB DBREF 2LCK A 14 309 UNP P70406 UCP2_MOUSE 14 309 SEQADV 2LCK MET A 13 UNP P70406 INITIATING METHIONINE SEQADV 2LCK HIS A 310 UNP P70406 EXPRESSION TAG SEQADV 2LCK HIS A 311 UNP P70406 EXPRESSION TAG SEQADV 2LCK HIS A 312 UNP P70406 EXPRESSION TAG SEQADV 2LCK HIS A 313 UNP P70406 EXPRESSION TAG SEQADV 2LCK HIS A 314 UNP P70406 EXPRESSION TAG SEQADV 2LCK HIS A 315 UNP P70406 EXPRESSION TAG SEQRES 1 A 303 MET THR VAL LYS PHE LEU GLY ALA GLY THR ALA ALA CYS SEQRES 2 A 303 ILE ALA ASP LEU ILE THR PHE PRO LEU ASP THR ALA LYS SEQRES 3 A 303 VAL ARG LEU GLN ILE GLN GLY GLU SER GLN GLY LEU VAL SEQRES 4 A 303 ARG THR ALA ALA SER ALA GLN TYR ARG GLY VAL LEU GLY SEQRES 5 A 303 THR ILE LEU THR MET VAL ARG THR GLU GLY PRO ARG SER SEQRES 6 A 303 LEU TYR ASN GLY LEU VAL ALA GLY LEU GLN ARG GLN MET SEQRES 7 A 303 SER PHE ALA SER VAL ARG ILE GLY LEU TYR ASP SER VAL SEQRES 8 A 303 LYS GLN PHE TYR THR LYS GLY SER GLU HIS ALA GLY ILE SEQRES 9 A 303 GLY SER ARG LEU LEU ALA GLY SER THR THR GLY ALA LEU SEQRES 10 A 303 ALA VAL ALA VAL ALA GLN PRO THR ASP VAL VAL LYS VAL SEQRES 11 A 303 ARG PHE GLN ALA GLN ALA ARG ALA GLY GLY GLY ARG ARG SEQRES 12 A 303 TYR GLN SER THR VAL GLU ALA TYR LYS THR ILE ALA ARG SEQRES 13 A 303 GLU GLU GLY ILE ARG GLY LEU TRP LYS GLY THR SER PRO SEQRES 14 A 303 ASN VAL ALA ARG ASN ALA ILE VAL ASN CYS ALA GLU LEU SEQRES 15 A 303 VAL THR TYR ASP LEU ILE LYS ASP THR LEU LEU LYS ALA SEQRES 16 A 303 ASN LEU MET THR ASP ASP LEU PRO CYS HIS PHE THR SER SEQRES 17 A 303 ALA PHE GLY ALA GLY PHE CYS THR THR VAL ILE ALA SER SEQRES 18 A 303 PRO VAL ASP VAL VAL LYS THR ARG TYR MET ASN SER ALA SEQRES 19 A 303 LEU GLY GLN TYR HIS SER ALA GLY HIS CYS ALA LEU THR SEQRES 20 A 303 MET LEU ARG LYS GLU GLY PRO ARG ALA PHE TYR LYS GLY SEQRES 21 A 303 PHE MET PRO SER PHE LEU ARG LEU GLY SER TRP ASN VAL SEQRES 22 A 303 VAL MET PHE VAL THR TYR GLU GLN LEU LYS ARG ALA LEU SEQRES 23 A 303 MET ALA ALA TYR GLN SER ARG GLU ALA PRO PHE HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS HELIX 1 1 VAL A 15 ILE A 30 1 16 HELIX 2 2 THR A 31 LEU A 41 1 11 HELIX 3 3 GLY A 49 ALA A 54 1 6 HELIX 4 4 GLY A 61 GLY A 74 1 14 HELIX 5 5 GLY A 74 ASN A 80 1 7 HELIX 6 6 GLY A 81 ARG A 96 1 16 HELIX 7 7 GLY A 98 THR A 108 1 11 HELIX 8 8 GLY A 115 ALA A 134 1 20 HELIX 9 9 GLN A 135 GLN A 147 1 13 HELIX 10 10 SER A 158 GLY A 171 1 14 HELIX 11 11 GLY A 171 THR A 203 1 33 HELIX 12 12 ASP A 213 MET A 243 1 31 HELIX 13 13 SER A 252 LYS A 263 1 12 HELIX 14 14 PRO A 266 LYS A 271 1 6 HELIX 15 15 PHE A 273 ARG A 296 1 24 HELIX 16 16 ALA A 300 ALA A 307 1 8 CISPEP 1 LEU A 247 GLY A 248 14 -1.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000