PDB Short entry for 2LCY HEADER VIRAL PROTEIN 12-MAY-11 2LCY TITLE NMR STRUCTURE OF THE COMPLETE INTERNAL FUSION LOOP FROM EBOLAVIRUS GP2 TITLE 2 AT PH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRION SPIKE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 507-560; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS; SOURCE 3 ORGANISM_TAXID: 186538; SOURCE 4 GENE: GP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET41 KEYWDS VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.M.GREGORY,E.HARADA,B.LIANG,L.K.TAMM REVDAT 3 14-JUN-23 2LCY 1 REMARK REVDAT 2 20-JUL-11 2LCY 1 JRNL REVDAT 1 22-JUN-11 2LCY 0 JRNL AUTH S.M.GREGORY,E.HARADA,B.LIANG,S.E.DELOS,J.M.WHITE,L.K.TAMM JRNL TITL STRUCTURE AND FUNCTION OF THE COMPLETE INTERNAL FUSION LOOP JRNL TITL 2 FROM EBOLAVIRUS GLYCOPROTEIN 2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 11211 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21690393 JRNL DOI 10.1073/PNAS.1104760108 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000102244. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-13C; U-15N] REMARK 210 EBOLAVIRUS FUSION LOOP PH 5.5, REMARK 210 90% H2O/10% D2O; 0.5-1 MM [U-15N] REMARK 210 EBOLAVIRUS FUSION LOOP PH 5.5, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D HNCO; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; NMRS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 508 122.66 -176.65 REMARK 500 1 LYS A 510 -46.68 -152.27 REMARK 500 1 CYS A 511 42.31 75.60 REMARK 500 1 PRO A 513 -105.44 -87.03 REMARK 500 1 LEU A 515 41.06 -96.35 REMARK 500 1 HIS A 516 -35.87 176.21 REMARK 500 1 TRP A 518 81.46 -66.07 REMARK 500 1 THR A 519 -55.13 -169.78 REMARK 500 1 ALA A 526 -3.91 -140.72 REMARK 500 1 ILE A 527 -38.10 -146.59 REMARK 500 1 GLU A 540 84.23 -57.58 REMARK 500 1 TYR A 543 -95.87 179.63 REMARK 500 1 GLU A 545 -168.06 79.71 REMARK 500 1 LEU A 547 -71.65 -82.16 REMARK 500 1 MET A 548 -23.03 71.59 REMARK 500 1 ASN A 550 -25.40 73.92 REMARK 500 1 GLN A 551 121.90 74.39 REMARK 500 1 ASP A 552 58.51 -154.02 REMARK 500 2 GLN A 508 125.81 -179.23 REMARK 500 2 LYS A 510 -49.51 -151.15 REMARK 500 2 CYS A 511 43.91 76.80 REMARK 500 2 PRO A 513 -103.47 -85.24 REMARK 500 2 LEU A 515 40.64 -100.03 REMARK 500 2 HIS A 516 -32.89 176.44 REMARK 500 2 TRP A 518 79.38 -64.86 REMARK 500 2 THR A 519 -56.24 -167.03 REMARK 500 2 ILE A 527 -35.55 -149.08 REMARK 500 2 PRO A 533 79.17 -61.03 REMARK 500 2 GLU A 540 96.31 32.16 REMARK 500 2 TYR A 543 -97.93 177.33 REMARK 500 2 GLU A 545 -133.57 74.76 REMARK 500 2 ASN A 550 -23.42 80.51 REMARK 500 2 GLN A 551 123.19 77.16 REMARK 500 2 ASP A 552 59.90 -152.14 REMARK 500 2 LEU A 558 -35.59 -153.35 REMARK 500 3 GLN A 508 129.21 -179.48 REMARK 500 3 LYS A 510 -53.42 -157.65 REMARK 500 3 CYS A 511 45.04 79.04 REMARK 500 3 PRO A 513 -101.34 -81.20 REMARK 500 3 LEU A 515 44.10 -99.65 REMARK 500 3 HIS A 516 -31.11 170.48 REMARK 500 3 TRP A 518 78.62 -64.86 REMARK 500 3 THR A 519 -55.78 -166.93 REMARK 500 3 ALA A 526 -2.54 -142.50 REMARK 500 3 ILE A 527 -40.72 -148.46 REMARK 500 3 GLU A 540 91.53 -29.67 REMARK 500 3 TYR A 543 -98.07 177.42 REMARK 500 3 LEU A 547 -77.48 41.47 REMARK 500 3 MET A 548 -24.85 79.46 REMARK 500 3 ASN A 550 -9.84 68.80 REMARK 500 REMARK 500 THIS ENTRY HAS 369 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17638 RELATED DB: BMRB REMARK 900 RELATED ID: 2LCZ RELATED DB: PDB DBREF 2LCY A 507 560 UNP A9QPL9 A9QPL9_9MONO 507 560 SEQRES 1 A 54 ALA GLN PRO LYS CYS ASN PRO ASN LEU HIS TYR TRP THR SEQRES 2 A 54 THR GLN ASP GLU GLY ALA ALA ILE GLY LEU ALA TRP ILE SEQRES 3 A 54 PRO TYR PHE GLY PRO ALA ALA GLU GLY ILE TYR ILE GLU SEQRES 4 A 54 GLY LEU MET HIS ASN GLN ASP GLY LEU ILE CYS GLY LEU SEQRES 5 A 54 ARG GLN HELIX 1 1 PHE A 535 ALA A 539 5 5 SSBOND 1 CYS A 511 CYS A 556 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000