PDB Short entry for 2LJD HEADER MEMBRANE PROTEIN, CELL ADHESION 11-SEP-11 2LJD TITLE MONOPHOSPHORYLATED (747PY) BETA3 INTEGRIN CYTOPLASMIC TAIL UNDER TITLE 2 MEMBRANE MIMETIC CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN RESIDUES 742-788; COMPND 5 SYNONYM: PLATELET MEMBRANE GLYCOPROTEIN IIIA, GPIIIA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB3, GP3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS CELL ADHESION, TYROSINE PHOSPHORYLATION, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR L.DESHMUKH,O.VINOGRADOVA REVDAT 3 14-JUN-23 2LJD 1 SEQADV LINK REVDAT 2 19-JUN-13 2LJD 1 JRNL REVDAT 1 05-OCT-11 2LJD 0 JRNL AUTH L.DESHMUKH,N.MELLER,N.ALDER,T.BYZOVA,O.VINOGRADOVA JRNL TITL TYROSINE PHOSPHORYLATION AS A CONFORMATIONAL SWITCH: A CASE JRNL TITL 2 STUDY OF INTEGRIN BETA3 CYTOPLASMIC TAIL. JRNL REF J.BIOL.CHEM. V. 286 40943 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21956114 JRNL DOI 10.1074/JBC.M111.231951 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CNS 1.21 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN EXPLICIT WATER REMARK 4 REMARK 4 2LJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000102453. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 150-300 MM [U-100% 2H] REMARK 210 DPC, 1 MM DSS, 20 MM SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PSVS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A 696 REMARK 465 SER A 697 REMARK 465 SER A 698 REMARK 465 HIS A 699 REMARK 465 HIS A 700 REMARK 465 HIS A 701 REMARK 465 HIS A 702 REMARK 465 HIS A 703 REMARK 465 HIS A 704 REMARK 465 SER A 705 REMARK 465 SER A 706 REMARK 465 GLY A 707 REMARK 465 LEU A 708 REMARK 465 VAL A 709 REMARK 465 PRO A 710 REMARK 465 ARG A 711 REMARK 465 GLY A 712 REMARK 465 SER A 713 REMARK 465 HIS A 714 REMARK 465 MET A 715 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD13 ILE A 757 HA ARG A 760 1.12 REMARK 500 O2P PTR A 747 HH21 ARG A 760 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 746 -45.28 -167.90 REMARK 500 1 PTR A 747 -59.97 -168.49 REMARK 500 2 LYS A 738 -35.21 -131.45 REMARK 500 2 LEU A 746 -42.93 -158.44 REMARK 500 2 PTR A 747 -68.80 -165.34 REMARK 500 2 ASN A 756 110.94 -175.07 REMARK 500 3 LEU A 746 -49.43 -167.55 REMARK 500 3 PTR A 747 -61.59 -156.29 REMARK 500 3 PHE A 754 -166.73 -108.88 REMARK 500 3 THR A 755 -70.70 -96.57 REMARK 500 4 LEU A 746 -47.74 -153.14 REMARK 500 4 PTR A 747 -66.62 -157.00 REMARK 500 4 ARG A 760 74.37 50.41 REMARK 500 5 LYS A 738 -41.11 -131.27 REMARK 500 5 LEU A 746 -50.30 -169.61 REMARK 500 5 PTR A 747 -66.23 -154.29 REMARK 500 6 LYS A 738 -34.43 -139.29 REMARK 500 6 LEU A 746 -41.27 -155.58 REMARK 500 6 PTR A 747 -56.04 -172.75 REMARK 500 6 THR A 755 38.05 -87.60 REMARK 500 6 ASN A 756 118.99 77.10 REMARK 500 6 ARG A 760 75.59 45.59 REMARK 500 7 LYS A 738 -34.03 -139.12 REMARK 500 7 LEU A 746 -47.32 -151.54 REMARK 500 7 PTR A 747 -59.95 -152.01 REMARK 500 7 PHE A 754 -160.45 -129.39 REMARK 500 7 ASN A 756 111.31 -160.37 REMARK 500 7 ARG A 760 72.91 38.36 REMARK 500 8 LEU A 746 -46.49 -163.83 REMARK 500 8 PTR A 747 -58.95 -157.75 REMARK 500 8 ARG A 760 71.94 46.76 REMARK 500 9 LYS A 738 -35.81 -131.91 REMARK 500 9 LEU A 746 -49.03 -155.78 REMARK 500 9 PTR A 747 -70.34 -153.06 REMARK 500 9 PHE A 754 -164.00 -117.96 REMARK 500 9 ARG A 760 -3.23 64.15 REMARK 500 10 LYS A 738 -38.19 -135.15 REMARK 500 10 LEU A 746 -39.53 178.19 REMARK 500 10 PTR A 747 -61.71 -173.80 REMARK 500 11 LEU A 746 -42.29 -163.60 REMARK 500 11 PTR A 747 -61.45 -171.75 REMARK 500 11 LYS A 748 -164.50 -124.77 REMARK 500 11 ASN A 756 107.03 -165.96 REMARK 500 11 ARG A 760 71.64 45.47 REMARK 500 12 LEU A 746 -51.83 -167.57 REMARK 500 12 PTR A 747 -61.06 -151.89 REMARK 500 12 ASN A 756 109.03 -162.82 REMARK 500 13 LEU A 746 -40.91 -168.41 REMARK 500 13 PTR A 747 -67.61 -171.98 REMARK 500 13 LYS A 748 -167.04 -125.01 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17930 RELATED DB: BMRB REMARK 900 RELATED ID: 2LJE RELATED DB: PDB REMARK 900 RELATED ID: 2LJF RELATED DB: PDB DBREF 2LJD A 716 762 UNP P05106 ITB3_HUMAN 742 788 SEQADV 2LJD GLY A 696 UNP P05106 EXPRESSION TAG SEQADV 2LJD SER A 697 UNP P05106 EXPRESSION TAG SEQADV 2LJD SER A 698 UNP P05106 EXPRESSION TAG SEQADV 2LJD HIS A 699 UNP P05106 EXPRESSION TAG SEQADV 2LJD HIS A 700 UNP P05106 EXPRESSION TAG SEQADV 2LJD HIS A 701 UNP P05106 EXPRESSION TAG SEQADV 2LJD HIS A 702 UNP P05106 EXPRESSION TAG SEQADV 2LJD HIS A 703 UNP P05106 EXPRESSION TAG SEQADV 2LJD HIS A 704 UNP P05106 EXPRESSION TAG SEQADV 2LJD SER A 705 UNP P05106 EXPRESSION TAG SEQADV 2LJD SER A 706 UNP P05106 EXPRESSION TAG SEQADV 2LJD GLY A 707 UNP P05106 EXPRESSION TAG SEQADV 2LJD LEU A 708 UNP P05106 EXPRESSION TAG SEQADV 2LJD VAL A 709 UNP P05106 EXPRESSION TAG SEQADV 2LJD PRO A 710 UNP P05106 EXPRESSION TAG SEQADV 2LJD ARG A 711 UNP P05106 EXPRESSION TAG SEQADV 2LJD GLY A 712 UNP P05106 EXPRESSION TAG SEQADV 2LJD SER A 713 UNP P05106 EXPRESSION TAG SEQADV 2LJD HIS A 714 UNP P05106 EXPRESSION TAG SEQADV 2LJD MET A 715 UNP P05106 EXPRESSION TAG SEQRES 1 A 67 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 67 VAL PRO ARG GLY SER HIS MET LYS LEU LEU ILE THR ILE SEQRES 3 A 67 HIS ASP ARG LYS GLU PHE ALA LYS PHE GLU GLU GLU ARG SEQRES 4 A 67 ALA ARG ALA LYS TRP ASP THR ALA ASN ASN PRO LEU PTR SEQRES 5 A 67 LYS GLU ALA THR SER THR PHE THR ASN ILE THR TYR ARG SEQRES 6 A 67 GLY THR MODRES 2LJD PTR A 747 TYR O-PHOSPHOTYROSINE HET PTR A 747 24 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P HELIX 1 1 LYS A 716 PHE A 727 1 12 HELIX 2 2 PHE A 727 ASN A 744 1 18 HELIX 3 3 GLU A 749 PHE A 754 1 6 LINK C LEU A 746 N PTR A 747 1555 1555 1.28 LINK C PTR A 747 N LYS A 748 1555 1555 1.29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000