PDB Short entry for 2LLN HEADER OXIDOREDUCTASE 15-NOV-11 2LLN TITLE SOLUTION STRUCTURE OF THERMUS THERMOPHILUS APO-CUA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 11-135; COMPND 5 SYNONYM: CYTOCHROME C BA(3) SUBUNIT II, CYTOCHROME C OXIDASE COMPND 6 POLYPEPTIDE II, CYTOCHROME CBA3 SUBUNIT 2; COMPND 7 EC: 1.9.3.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: CBAB, CTAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET9ACUA KEYWDS ENTATIC STATE, ELECTRON TRANSFER, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.ZABALLA,L.ABRIATA,A.DONAIRE,A.VILA REVDAT 2 14-JUN-23 2LLN 1 REMARK SEQADV REVDAT 1 30-MAY-12 2LLN 0 JRNL AUTH M.ZABALLA,L.ABRIATA,A.DONAIRE,A.VILA JRNL TITL FLEXIBILITY OF THE METAL BINDING REGION IN APO-CUPREDOXINS JRNL TITL 2 AND ITS IMPLICATIONS ON THE ENTATIC STATE AND IN VIVO JRNL TITL 3 METALLATION JRNL REF PROC.NATL.ACAD.SCI.USA 2012 JRNL REFN ESSN 1091-6490 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UNIO 2.0.1, CYANA REMARK 3 AUTHORS : TORSTEN HERMANN (UNIO), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LLN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102533. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 -1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 100 MM POTASSIUM REMARK 210 PHOSPHATE, 2 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.8 -1 MM [U-99% 15N] REMARK 210 PROTEIN, 100 MM POTASSIUM REMARK 210 PHOSPHATE, 2 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.8 - 1 MM PROTEIN, 100 MM REMARK 210 POTASSIUM PHOSPHATE, 2 MM DTT, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(CO)CA; 3D REMARK 210 HN(CA)CO; 3D CBCA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HBHA(CO)NH; 3D HNHA; REMARK 210 2D 1H-1H TOCSY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H NOESY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO 2.0.1, CYANA, TALOS+, CARA, REMARK 210 TOPSPIN REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 -179.34 -69.81 REMARK 500 1 ALA A 5 -75.29 -178.58 REMARK 500 1 LEU A 8 122.82 66.29 REMARK 500 1 THR A 15 26.07 -150.02 REMARK 500 1 ALA A 28 -76.01 -54.39 REMARK 500 1 ASN A 35 28.61 -155.69 REMARK 500 1 PRO A 52 76.58 -69.79 REMARK 500 1 VAL A 55 84.47 -164.09 REMARK 500 1 ASP A 69 49.41 -156.95 REMARK 500 1 HIS A 72 -80.99 -118.30 REMARK 500 1 GLU A 77 -172.25 -66.34 REMARK 500 1 GLU A 84 117.34 -160.90 REMARK 500 1 GLU A 89 119.20 -164.69 REMARK 500 1 CYS A 107 153.44 179.57 REMARK 500 1 TYR A 110 -75.40 69.43 REMARK 500 1 LEU A 113 171.25 -52.82 REMARK 500 1 HIS A 115 37.93 -179.33 REMARK 500 1 GLN A 116 -67.80 -162.25 REMARK 500 1 ASN A 117 -175.65 -58.19 REMARK 500 2 VAL A 2 80.85 38.06 REMARK 500 2 ILE A 3 78.20 -111.81 REMARK 500 2 PRO A 4 -170.76 -69.73 REMARK 500 2 ALA A 5 35.41 -144.23 REMARK 500 2 LYS A 7 -166.39 63.46 REMARK 500 2 LEU A 8 178.18 -54.82 REMARK 500 2 THR A 14 -70.78 -48.47 REMARK 500 2 THR A 15 35.26 -150.92 REMARK 500 2 ALA A 28 -76.19 -58.43 REMARK 500 2 ASN A 35 30.24 -143.37 REMARK 500 2 PRO A 52 73.77 -69.72 REMARK 500 2 ASP A 69 38.30 -159.16 REMARK 500 2 HIS A 72 136.90 -174.85 REMARK 500 2 GLU A 77 -175.44 -67.77 REMARK 500 2 ARG A 104 -164.58 -164.90 REMARK 500 2 ILE A 105 158.53 58.20 REMARK 500 2 CYS A 107 -42.51 -141.67 REMARK 500 2 TYR A 110 155.39 63.41 REMARK 500 2 LEU A 113 104.14 62.54 REMARK 500 2 GLN A 116 -169.35 63.60 REMARK 500 2 ASN A 117 97.32 63.76 REMARK 500 3 PRO A 4 -176.96 -69.77 REMARK 500 3 LYS A 7 163.75 63.07 REMARK 500 3 LEU A 8 164.38 61.31 REMARK 500 3 THR A 15 24.83 -149.71 REMARK 500 3 ALA A 28 -79.17 -56.92 REMARK 500 3 ASN A 35 35.27 -140.96 REMARK 500 3 PHE A 46 70.59 -110.26 REMARK 500 3 PRO A 52 75.56 -69.83 REMARK 500 3 ASP A 69 61.97 -156.96 REMARK 500 3 GLU A 77 -175.98 -59.96 REMARK 500 REMARK 500 THIS ENTRY HAS 356 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18081 RELATED DB: BMRB DBREF 2LLN A 2 126 UNP P98052 COX2_THETH 11 135 SEQADV 2LLN MET A 1 UNP P98052 INITIATING METHIONINE SEQRES 1 A 126 MET VAL ILE PRO ALA GLY LYS LEU GLU ARG VAL ASP PRO SEQRES 2 A 126 THR THR VAL ARG GLN GLU GLY PRO TRP ALA ASP PRO ALA SEQRES 3 A 126 GLN ALA VAL VAL GLN THR GLY PRO ASN GLN TYR THR VAL SEQRES 4 A 126 TYR VAL LEU ALA PHE ALA PHE GLY TYR GLN PRO ASN PRO SEQRES 5 A 126 ILE GLU VAL PRO GLN GLY ALA GLU ILE VAL PHE LYS ILE SEQRES 6 A 126 THR SER PRO ASP VAL ILE HIS GLY PHE HIS VAL GLU GLY SEQRES 7 A 126 THR ASN ILE ASN VAL GLU VAL LEU PRO GLY GLU VAL SER SEQRES 8 A 126 THR VAL ARG TYR THR PHE LYS ARG PRO GLY GLU TYR ARG SEQRES 9 A 126 ILE ILE CYS ASN GLN TYR CYS GLY LEU GLY HIS GLN ASN SEQRES 10 A 126 MET PHE GLY THR ILE VAL VAL LYS GLU HELIX 1 1 ASP A 24 ALA A 28 5 5 SHEET 1 A 2 GLU A 9 ARG A 10 0 SHEET 2 A 2 GLU A 89 VAL A 90 -1 O VAL A 90 N GLU A 9 SHEET 1 B 4 VAL A 30 GLN A 31 0 SHEET 2 B 4 GLN A 36 LEU A 42 -1 O THR A 38 N VAL A 30 SHEET 3 B 4 GLU A 60 THR A 66 1 O LYS A 64 N VAL A 41 SHEET 4 B 4 VAL A 93 ARG A 94 -1 O VAL A 93 N PHE A 63 SHEET 1 C 2 GLU A 102 TYR A 103 0 SHEET 2 C 2 ILE A 122 VAL A 123 -1 O ILE A 122 N TYR A 103 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000